Sed0003361 (gene) Chayote v1

Overview


Name	Sed0003361
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase II transcription factor B subunit 2
Location	LG14: 22990603 .. 22999243 (-)
RNA-Seq Expression	Sed0003361
Synteny	Sed0003361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATTTAGGTTTGTGGATAGTTGTTTTGGTCGAAGACCGGTAATCCAATTGAACCCTTAGAAGTGATATTAAGGAAAAAATGATGGAAAATAAATGCATAGGTATCGTCAATTGATCTCTCCAGCTCCGGTACGAGTGTTTACAAATTTCATCTCTGAATTTCTTCCCGATTTGAGTTCCACCAAAGAATTCCTCAAAAGAAGAAAAGATCGATTGATTGAGAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTCATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGACAAGCTCTATCACAACGCGTTCATCTGCGAAGCCATTCTCAGGTTCAATTCGTCTTTTCTTTCATCTCAAATGTTCTACATTTCATATCGATTCTCAATTCCTTCTTGCTCATTTTTTACTTACTCGGGGTTTCGTTGCCCGGTCAGCGAGCGGGGATCTATGGTAGTGCTCGATAAACTTTCTTAAAACCCTAGCTACACTTAGTAGTCATTATGTATTTCGTATTCTCCTTAATAAAACCATTATCTGCGGTCCCGTCGGATAATTATTTAATTTTTGAAATTTAAGTTTATTTTTACTCACATTTATAATATTTCTGTCTTTCCTACCATGTATCCATCTTTTCTTAGGAAGAATGTGAATATTATCCATTTCAAAAATAAAAAACAAGTTTTTGGAAACTATTTTGATTTGGTTTATAAAATTACAGGTAAGACATAGATATCCAAGAAATAACCTGAGGTAAATTAGGTGTTGTAGGCTTAAATTTCAAAAATAAAAAACTAAAAGCAAAATGGTTATGAAACGGGATGTACATAACTCGCCAGTGGATGCAGCCAACCCATCATTAGTGAACCAAGTAAATCTCTATCCGTTTTCTATTTTTCTGTTTGATTGTTTTTCCGTTTTCCTAACAGTTTATAACTTATAAATGGATTGTTTTTTTCTAGTTCCGGAGGTTTCAGTTATAAAGAAGAGTACTGATCATTGTTTTTTGTAATAGGTCACTTCCACCACTGGCCAAGAAGTTTGTTATACAAATGTTGTACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCGAAGTTTAAGGTTGCTGTCGATCGATTGATTCAATTGCGAGTATTTATTGAGACTGTGGATAGGTGTTTGTTCTCTTCTCTCGTTTTCTTAGAATTCGACATTCTTTCACAATGCTTTTAGATGCATTCTAGTTAAATAGGAAAGCTGAAATTTAAGTGTTCAAGAGTAAGGCCAAGTTTGTTGGGTTTGTTTTATCTGAGGTTTCGTTTCCATCAGTAGATAGATTACGTACATGTTCATATCACGATATCATCGGCATTGGAAGGTTTATGCAAGAGAAATTTAATTAAGAACTTGTGGTGCAATATGTAAATTCTTTTGCTTTGTTTATGCTTTGATCTCATTGATATCGTTTATAATTCTATCAGTAGTTCTGCTTGGCTTGGTTTATAGTTCTCAATCTAATCCTATATTGTAATATTTTCTATGTATCCCTGTTTTATTGATAGGAAAAGAGAAACAACCTACAGGCTAAATCCAACATTCCAAGCCAACCTCCAAAAGCTTTTAATACATGGGTAGGCTTTCTCTCACTTGGCTCATTAAATGCATTTTTAAACCAGATATGCAAGGAGGGATGTATGATTTCTTTAATAATTAATACTCAGCACAAACATTCTTGTACATGGATCTTTCTTAATATATGCACATTTTCTTTCGACTCGCTACCTTATCTGTGTTCATCAAGTTCTACTAACCTTCTATAAAAAGAAGCTGATCCTGGAGTTAGTCTCATTGATTTTAACATTTTAAACTGTTTTACTATTGGTTGTTTAGAGAATGACCTTGAATTTGGGATCTTGCAGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATAACCGTGAGGCTTCCAAGTCTGGAAGAGCTTGAGGCTTATGCTCTCGGTCAATGGGAGGTTGAACATTATCAAACTTTTCAGTTGTTTATTATATGATTTTTGATGGTGAATATTCTTCTGACTTGCTGTTATGTTAATTCAGTGCTTCTTGCTACAATTGATAAACTCAGGCCAAGCTGAGAAGCCATCAAATATTAGTTCTTCTATGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAAAGGTTAAAAATTTTGTTCAGTGTATACTAGCTTATAGACAGCAATCACTTCTTATATCTGATAAAATTTCAGTATGGTATCCAGGGATAAAGAAGCTCCACGATTAACTGCGAGTGGTTTTCAGTTCTTGGTATGAATCACATGAACCATACACCTTTTCAAATACTCACTTATCTGTCTCACCAGGGGTTCTTGTGATATATGTAAACTTTAGTTGATGGAAACAAATGCACAACTTTGGTATATTATCAGAGAATATATATCTAACTCCGAGGTTTGTGTTTTTATTTTTTATTGTTATATTCTATTGCTTTTCTCCGAGGAAAACTGTATATTTTCTGTCATCAATTTGAGAACAATTTCTATTTGAATCCAAATTATGAACTATTCTTATCAAAAGAAAAGACAACTATTGTCAATTGTAAGGCTATTTTCTTTTAACACGTTTATGTTTATATTAGTTGGTCCGTGGAGATTTGTTATTAATAACTCATATTCCTCTTTTGTTTTTTGTTTTTTTGAAAAAGATATTTCTCCTTTAATAATGCTCTATCAATATGGTGCAGGAGCGAGGTGTGGATCCCGCAGATTTGATTTCTTTTATGCTAGAGCTTAGTTTTCACGTTACAGGAGAGGTATCAATTCTTGGATCATTTCAATTTCTTATTTTTCATCTTTTTCTTGTATTTTTTTATTAGTTATCTCACTACAGAACTATTTTTTAAGCCTTGTTGCTTACTACTTTGGGTTGGTTCTGAAGTATAAATTCTTGCACAAGATTGATTATATTTAGTTTGTTATTTGAAAACCCATATAAGGGGAAAAAATCGTAATGTTACATAGAAGCCTATCGAAACTACAATAAAGGTCAATAAATGAGCAAAATACAAAGATAAATCGGTAAATACAAACTCGTAAATATGAGATACGAAGAAACGTGTGGGTATTGGGTGAACTTGTAGGTCATTGTCAACGTAGTCATGAACTTGTAGGTCCTTTATATTTTGCTCGCAGATGAGAAAAATGGTACTTGTGTGTCAAGAACCGATTCCATCAGATATGCCATATGACTAGAGGAAGGAGAAACAACCAAAATTAAGGGGAATTCAAAGAGACACCAACTTAGGGGATGTTGAGGATCCCACATTGAAAAAGTGGGGATACATCACAACATTTTGGTGCCTTTTTGGGATCCTCAACATGCCCCCAAGTTGGTGCCTCTTTGGATTCATCATTTATGAATCGAATCTCAATTTATTTTTATTGGACGAAATACCTGTTTGGACTACATCGGCTCTGATACAATATTAGATAATACGAAGTTCCATCTCAAAACTAATTGCTAATTGAGTAGTTCATCAATCTTATAAATGTTGTAAAATAACCGATTTTCCTTCCACTCCTATAGCTTCAAGTGGCTGTTTACCTGTTCACAGATTCTTCCCTTTGAAACTCAAGTAAGAAAAAAAATATCGAACACACAAGCTAGGGATGCCACAATTAACTCTAAAACTCTTCTCATCCCTCTCGCTCGTCTCATAATCAATAACAATTGTACACTAATCGTCTGAAAACTATAACAAACTCTAATTATCCATATAACTGTTAGAAAACTTGTGCATATACTATTAACTGCACAATGCCAACATGGTTCTTCTTTGTTCTGTAGGCTTATGATATTGATACACTGACAGAAGAACAGAGATATGCTATCAAGGACCTTGCGGATCTAGGACTGGTTAAGCTTCAGCAGGTATTCGATTCGCCTCTGCTACTTTTTAAATTGAACATGACCTTTGCTTTAGTTATTTTATTTTAACTTCACTTTTTTTCCTTTTGTTGTGTGTGGGTGTGGGGTACAAGAAAGCTCTCCAATTAGAGATCAATGAAAAAACCTATAATCGATAAAAAAAAAAAAGGGTTTACATTTGCACAAGCATGGAAATAATCGAACCTATAAAGTTGTCTAAGCTTGAGAAAGCGTCTGTGAAAATTCTTGGTTTTCGCTGTTAATTGTTTCCAGGGTAGAAAAGACCGCTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCTTCTTCTAGGAAACAGGTGAGTGTTTCTGAATTATATTTAAATTTGATTAATTTCTGTTAGGTATCCAAGTATAGAATATATATATATATATATGAAAACTGCAAAGATAACTTTATTGCAATCTCAATGAGGAAATTACAATATCAATAGTCTAATTAATAAGGACGATTCACGATCTTCCACAATACAAATGCATAAACTCTTCTCAAGGCTAATAATTGTCTAACTAATCCGTTCCCAATACTAATAAATGCCTAATCATTTCGGACTCAATTTCTCTAGGTTCATTTTCTTTACGGCTACTAAGTTTTTGAGTGGTTTTTTATTTTTGCATAATAGCTTTTCCACAATTGTTTTATAGCTATTGATATACGCTATAGTATCCTCTGCTATATATATATATATATTATCCTCGTTACTTCCGTATTTTTTATTTGCAGATCCTTGTTTCTCGTATTATTAACTCAGTCCATTAATCCCTTTTTTTTAGTTTTCTATAGGCTAGTTGGAGGCTCTGATGAACGTTTTTGTTCTTCCTAATTTCTTCCTGTTGTATACCCAGGGTTTTGTCGTCGTGGAGACAAATTTCAGGCTGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGTACGTGTCATGATTTAATGTTTTATTACATTATATAACCAATGTTGAACTAGTTAGTTTTAATGACTCTGGATTGACCTATTGGATAAACCTGTGGCCCAAATTTCACACAACCAGGGCCAATGTAAACAGCAAAGGGTTAGAAGGAAAAATTGTGGTAACCACTTACACAAGATTAATATCCTACCTTGACAACTAAATTTAGTAGGGTCTAAGAGAATAGTTGAAATGTGTGCAAGATGGCCGAACACTGAAGAATATTAAAAAAAAATTACAAAGTCGATGGGTTCTGGATACATTTAATATTGACATAAAAAGTTTGCCTTTTCTTCTTCTTGAATGCTAAATATATTTGAGTTCCCCACCCCTGATAAACCCCTCTTGGAACTTCACATATGTGAGGAGGAAGATGTTAAGACACCTCTAATAATCAAACATACAATAGAACATAACAATATAATAGAGATTACAATGTCAACAGCCTTGCAAGAGGGCTATGTCTCTCTCAAAATCTCTACCAAAGACAATACCAAAACATTCTCTCCTTGTTTAGAACACAAACTTCCCTATATGACTAATACGCTAATAACTAATTACTACTATGCCATTCCTATGGGGTGACATAGTGGTTGGAGAGTTGGGCTTTGAGGGTATGCTCCCCTTAAGGTCCCGGATTCGAAACTCACCTGTGACATTACTCCTTCGATGGCTCCGGTGCCTGACCTAGGGATAGGTGTGGTTACCCTTGTTTAAAAAAAAAAGCTAATTACTACTATGCCCTTATTAATATAATACTAAAACTCCAAACCTACCCTTCCTTAGTACTCTTAACAGAAGATAGATTCTGTAAGGTCATTGGAAGGGCAAGCTGAGGGATAACTTGGCCATTCGTAGTTTCTTGAGAGTGCAAGCATTAAGCAGCTAGTGATAGTGTAAGGTCAGTAGGGCCAAGCATAGAATACTGTTACATAATTTGTTAATGATAATTCGATAATTATAGTTTTATACTTGTGCAAATTAGAAATGCCGTTACTTTTGTTACTATTGATAATTTTTATTTTACTTGTGTCAAGTTTTTACAACAAATTCGTTTTATTATAAAAGGTTTTTTTTTTAATTTTTTATAATTGTATTCTTTTCTTAAGCATTGCACATGTAATAGCCGTCGATTAAATAGGGTTGTGTTTGTTTTTGCGAAAGGAAAGATTCAAGTTCAACATTATACTATTTACCTACTTGCATAATGAATGCGGTCATTGCCTTAATAGATAATGCAGCAATCTGATCACACATCAATTTTCTATTTGGTTCAAGAATTATAAAATAAATTCTGTAACTGTCATGCAGGATTGAGTATCAACTTCCAAATCTTACCGTTGCAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGAATTACGGCAGATCAGGCATGTTTCTTGTCACCCTGGCATATGTTACTCTTAGTCTTATGAATTAAGGATACCATTATGTAATTTTCATATTGTAAATAGAATTTAGTAGATCAGATCTTCTTTGCGTTTTATTAGTTCATAATATCTTGCATTCTTAGTGTTCATTTTTGCTAATGGTGGAACTTTTTTTTTGAAACTGGGAAATCGGAGCTTCGCTCTACTATACCCGAGGTAACCGGGAGTTATTCCATTTTATTTTTTTGCACAAGAAGTGTTGGAGCATGGGGATTTGAGCCTCAAGATTATTTCTAAATCATCATAGGTTTTTGGCCTAGTGGTTAGGTCTTGAAAATCCAAGAAGTTATGAGTGCAATTCATGAGAATCCAAGAGGTTCAGAATCATAATTTTCTACGAATATATCAAATGTTGTAATGTTAGACAGTATGCCCTGCAATAATAGTCGAGGTACGTGGAATTTGGCTCCAACACTCAGATTAAAAAAAAAAGGATAATTTCTAGTAAGCAGATATCAATTGTCAATCCCATTATCAGTCAGTCACCGAGGGACTTCAACTAGCTTTGGTTCCTAATTCACAAAAAAAAAAAACCTATTTTTCTTGCGTGCATCAATCCCAATTCTCTCATAAACTTAATGTTAAACTCCGAATAATTCTTTATGTTATGAAAACGGTAACAACAATCAAACAGAAAACTATAAAGACAGAATACATAGAATTTACGTGGTTCACTAATGGTGTGTTAGCTCATCCACGGGCAGAGAAGAGAACTTTTTATTAAGGGGAGAACAAATAAAGAATGTCAATCGGAGAGGGCGAAGGATTTAAAAGAGTTTATATAGTGCACTCTCATAAAACTCTATTATAGAATAGACCCAAGTACAAAAACCTAATTACATATTTCATCTAGGTTTCGGGGCATTGCCCCCGAGCCCCCACCATGGGCCTCGCCCTTGGGACCTCGACTCGCTGACCGAGTAGGGAGACCCCGACTATGTAATCATGGGGCATCAAAAGGCATATCTCAACACTTTCAGAGTTGAAAACAATTAAAACGAGCAACCCATAGGGTTTTTTTGGAGTATGACAACAATAGGGGGATGGGAATTCAAACCCCTAACCTCTTGGTTTATGGGCGAACATTCATGTTGTTGAGCTATTGTTATGATTGGCAATCCATAGGTGAATATTACATTAAATATTAATTGATTTTCCATGCGGGTTGTCTCATTTCAAATTGCTTAAGATCTGACTGCTTTTTTATTTTGCAGATGGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACGGATCAGGTTAGGATTGCTTTATTAAGTTCTTTGATGTTTGGTAAGGCATTAGCTTCTATCTGTAAATCACCTGAAATTTTTTTACATTTGGTTCTCATGAGGCAATTTGATCAAATCTTTGTCCTGTTCCTGATTTTCCCCTTGCTTTCTATTCCATGATAGATTAGGTTATGGGAATCAGATCTTAATCGGGTCGAATTTACTTCCGCACATTTTTACGATGAGTTTCCTTCCAAGGTGCGAATTTCAAATGTTGCTTCTTTTCACTTTGAGGATTATTTGTACATTCATTTGAAAAATTGCCTGAGAATGAACTTTGGCATGTCAGGATGTTTTCGAGGCTGCTTGCGACTATGCACGAGAATGGAATGGGCTATTATGGGAGGACTCGAAAAGCATGCGATTGGTAGTGAAGGCAGACGTTCACACGCATATGCGCGAACATCTTCGCCGCCAAAAGTAGATCGTTAAGAGATGATACAATGCTGCTGCCAAGATCTGTTTATAAACCATGGCCTCTGCTACTTCAGTTTTTGTTGCTTCAGGGGGCATGGCTTAAAGTATGAAGAACAGTGAGAATTTTGTGGGGAAAGAATAGTGTCAGTGACTGTTCATTATGGTGTAGGCTTATTTTGCTAAGTCAAATTCCCCTTTTTTTTAGTACAACAACAATCTTTGGGGGCTAGGGGATTTGACGATGCGGCCTCTAGTCGAGAATACATGCCAATTACCATTGAGTTTAGTCCTCTTTGGCATCAATTTCCCTTAAAGATACAGTAAGCTCTGCTAGGTTGATTTCCCTTCTGGGCATAGATTTCATTCTAACACTTGTTTATAACTGGGACTAGACATTCTAGAGGAAATATAAGAATAATGACATGTATTTTTTTGAACGTGGAAA

mRNA sequence

ATTCATTTAGGTTTGTGGATAGTTGTTTTGGTCGAAGACCGGTAATCCAATTGAACCCTTAGAAGTGATATTAAGGAAAAAATGATGGAAAATAAATGCATAGGTATCGTCAATTGATCTCTCCAGCTCCGGTACGAGTGTTTACAAATTTCATCTCTGAATTTCTTCCCGATTTGAGTTCCACCAAAGAATTCCTCAAAAGAAGAAAAGATCGATTGATTGAGAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTCATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGACAAGCTCTATCACAACGCGTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCACTGGCCAAGAAGTTTGTTATACAAATGTTGTACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCGAAGTTTAAGGTTGCTGTCGATCGATTGATTCAATTGCGAGTATTTATTGAGACTGTGGATAGGAAAAGAGAAACAACCTACAGGCTAAATCCAACATTCCAAGCCAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATAACCGTGAGGCTTCCAAGTCTGGAAGAGCTTGAGGCTTATGCTCTCGGTCAATGGGAGTGCTTCTTGCTACAATTGATAAACTCAGGCCAAGCTGAGAAGCCATCAAATATTAGTTCTTCTATGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAAAGGGATAAAGAAGCTCCACGATTAACTGCGAGTGGTTTTCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATTATCAGAGAATATATATCTAACTCCGAGGAGCGAGGTGTGGATCCCGCAGATTTGATTTCTTTTATGCTAGAGCTTAGTTTTCACGTTACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGATATGCTATCAAGGACCTTGCGGATCTAGGACTGGTTAAGCTTCAGCAGGGTAGAAAAGACCGCTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCTTCTTCTAGGAAACAGGGTTTTGTCGTCGTGGAGACAAATTTCAGGCTGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTACCGTTGCAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGAATTACGGCAGATCAGATGGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACGGATCAGGTTATGGGAATCAGATCTTAATCGGGTCGAATTTACTTCCGCACATTTTTACGATGAGTTTCCTTCCAAGGATGTTTTCGAGGCTGCTTGCGACTATGCACGAGAATGGAATGGGCTATTATGGGAGGACTCGAAAAGCATGCGATTGGTAGTGAAGGCAGACGTTCACACGCATATGCGCGAACATCTTCGCCGCCAAAAGTAGATCGTTAAGAGATGATACAATGCTGCTGCCAAGATCTGTTTATAAACCATGGCCTCTGCTACTTCAGTTTTTGTTGCTTCAGGGGGCATGGCTTAAAGTATGAAGAACAGTGAGAATTTTGTGGGGAAAGAATAGTGTCAGTGACTGTTCATTATGGTGTAGGCTTATTTTGCTAAGTCAAATTCCCCTTTTTTTTAGTACAACAACAATCTTTGGGGGCTAGGGGATTTGACGATGCGGCCTCTAGTCGAGAATACATGCCAATTACCATTGAGTTTAGTCCTCTTTGGCATCAATTTCCCTTAAAGATACAGTAAGCTCTGCTAGGTTGATTTCCCTTCTGGGCATAGATTTCATTCTAACACTTGTTTATAACTGGGACTAGACATTCTAGAGGAAATATAAGAATAATGACATGTATTTTTTTGAACGTGGAAA

Coding sequence (CDS)

ATGCATAGGTATCGTCAATTGATCTCTCCAGCTCCGGTACGAGTGTTTACAAATTTCATCTCTGAATTTCTTCCCGATTTGAGTTCCACCAAAGAATTCCTCAAAAGAAGAAAAGATCGATTGATTGAGAAAATGCCTCAAGTAAAGATCATAGCGAAGAATTTCATGGACATGGTGGCCTCCTTGCCCGCCATGAAGCTCGACAAGCTCTATCACAACGCGTTCATCTGCGAAGCCATTCTCAGGTCACTTCCACCACTGGCCAAGAAGTTTGTTATACAAATGTTGTACATTGATGCTCCAGTAACAGCCAAGTCCATGGAGGAGTGGGTGCTTCCAGATGGAGTCTCGAAGTTTAAGGTTGCTGTCGATCGATTGATTCAATTGCGAGTATTTATTGAGACTGTGGATAGGAAAAGAGAAACAACCTACAGGCTAAATCCAACATTCCAAGCCAACCTCCAAAAGCTTTTAATACATGGTGAAGTTCTAGCCAGAGAACCAATGCCTTCTAATATAACCGTGAGGCTTCCAAGTCTGGAAGAGCTTGAGGCTTATGCTCTCGGTCAATGGGAGTGCTTCTTGCTACAATTGATAAACTCAGGCCAAGCTGAGAAGCCATCAAATATTAGTTCTTCTATGATGAAAGTTTTCCAGAAAGGCCTTTTAAGTCAAAGGGATAAAGAAGCTCCACGATTAACTGCGAGTGGTTTTCAGTTCTTGTTGATGGAAACAAATGCACAACTTTGGTATATTATCAGAGAATATATATCTAACTCCGAGGAGCGAGGTGTGGATCCCGCAGATTTGATTTCTTTTATGCTAGAGCTTAGTTTTCACGTTACAGGAGAGGCTTATGATATTGATACACTGACAGAAGAACAGAGATATGCTATCAAGGACCTTGCGGATCTAGGACTGGTTAAGCTTCAGCAGGGTAGAAAAGACCGCTGGTTCATACCTACTAAATTAGCCACAAATCTTTCAATGAGTTTGGCAGATTCTTCTTCTAGGAAACAGGGTTTTGTCGTCGTGGAGACAAATTTCAGGCTGTATGCTTATTCTTCTTCCAAACTACATTGTGAAATATTACGTCTTTTTTCAAGGATTGAGTATCAACTTCCAAATCTTACCGTTGCAGCAATAACGAAAGAAAGCTTGTATAATGCTTTTAAGAATGGAATTACGGCAGATCAGATGGTTACTTTTCTACAGCAGAATGCACATCCTCGTGTTGCAGAGAGAATACCATCAGTCCCTGAAAATGTCACGGATCAGGTTATGGGAATCAGATCTTAA

Protein sequence

MHRYRQLISPAPVRVFTNFISEFLPDLSSTKEFLKRRKDRLIEKMPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTAKSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVLAREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLSQRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFLQQNAHPRVAERIPSVPENVTDQVMGIRS

Homology

[Close]

BLAST of Sed0003361 vs. NCBI nr
Match: XP_022977542.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima])

HSP 1 Score: 717.6 bits (1851), Expect = 6.4e-203
Identity = 362/383 (94.52%), Postives = 374/383 (97.65%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLP+LEELEAYAL QWECFLLQLINSGQA+KPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKE PRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. NCBI nr
Match: KAG6604444.1 (General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 716.1 bits (1847), Expect = 1.9e-202
Identity = 364/393 (92.62%), Postives = 379/393 (96.44%), Query Frame = 0


Query: 35  KRRKDRLIEKMPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQ 94
           +RRK +   +MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+Q
Sbjct: 24  ERRKAQ--SRMPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQ 83

Query: 95  MLYIDAPVTAKSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANL 154
           MLYIDAPVTAKSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTY+LNPTFQANL
Sbjct: 84  MLYIDAPVTAKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANL 143

Query: 155 QKLLIHGEVLAREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSM 214
           QKLLIHGEVLAREPMPSNITVRLP+LEELEAYAL QWECFLLQLINSGQA+KPSNISSS+
Sbjct: 144 QKLLIHGEVLAREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSV 203

Query: 215 MKVFQKGLLSQRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFM 274
           MKVFQKGLLSQRDKE PRLT SGFQFLLMETNAQLWYIIREYISN+EER VDPADLISF+
Sbjct: 204 MKVFQKGLLSQRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFL 263

Query: 275 LELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLAD 334
           LELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLAD
Sbjct: 264 LELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLAD 323

Query: 335 SSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNG 394
           SSSRKQGFVVVETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNG
Sbjct: 324 SSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNG 383

Query: 395 ITADQMVTFLQQNAHPRVAERIPSVPENVTDQV 428
           ITA Q+VTFLQQNAHPRVAERIPSVPENVTDQ+
Sbjct: 384 ITAQQIVTFLQQNAHPRVAERIPSVPENVTDQI 414

[Close]

BLAST of Sed0003361 vs. NCBI nr
Match: TYK13130.1 (RNA polymerase II transcription factor B subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 715.3 bits (1845), Expect = 3.2e-202
Identity = 360/383 (93.99%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTYRLNPTFQANLQKLLIHGEV+
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVV 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLPSLE+LEAYAL QWECFLLQLINSGQAEKPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKEAPRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+ WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA+Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. NCBI nr
Match: XP_023543805.1 (RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 714.9 bits (1844), Expect = 4.1e-202
Identity = 361/383 (94.26%), Postives = 373/383 (97.39%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLP+LEELEAYAL QWECFLLQLINSGQA+KPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKE PRLT SGFQFLLMETNAQLWYIIREYISN+EER VDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. NCBI nr
Match: XP_038882460.1 (general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Benincasa hispida])

HSP 1 Score: 713.8 bits (1841), Expect = 9.2e-202
Identity = 360/383 (93.99%), Postives = 374/383 (97.65%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLP MKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPPMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTYRLNP FQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPMFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMP+NITVRLPSLEEL+AYAL QWECFLLQLINSGQAEKPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPANITVRLPSLEELKAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKEAPRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTLT+EQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTDEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA+Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot
Match: Q680U9 (General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thaliana OX=3702 GN=TFB2 PE=2 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 8.4e-174
Identity = 302/383 (78.85%), Postives = 342/383 (89.30%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPA+KLDKLY+N FICEAILRSLPPLAKK+V+QMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
             MEEWVL DG SK +VA+DRLIQLR+F E  DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
            REPM S+  ++LPSL+ELE YAL QWECFLLQLINSGQ EK + ISSSMMK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDK+ PRLT SGFQFLLM+TNAQLWYIIREYI N+EER VDPADLISF+LELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AY+++TLTE Q   +KDLADLGLVKLQQGRKD WFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           +ETNFR+YAYS+SKL CEILRLF+RIEYQLPNL   AITKESLYNAF NGIT+DQ++TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQN+HPR A+R+PS+PENVTDQ+
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot
Match: Q92759 (General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.5e-57
Identity = 129/385 (33.51%), Postives = 220/385 (57.14%), Query Frame = 0


Query: 47  QVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTAKS 106
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 107 MEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQ-KLLIHGEVLA 166
           +  WV  +     + +   L  LR++   +         LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 167 REPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLL-S 226
            +            +  L+ YA  +WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 227 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 286
               E P +T++GFQFLL++T AQLWY + +Y+  ++ RG+D  +++SF+ +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 287 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLS--MSLADSSSRKQGF 346
            Y ++ +++     ++ L + GLV  Q+ RK R + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 347 VVVETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVT 406
           +VVETN+RLYAY+ S+L   ++ LFS + Y+ PN+ VA +T+ES+  A  +GITA Q++ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 407 FLQQNAHPRVAERIPSVPENVTDQV 428
           FL+  AHP + ++ P +P  +TDQ+
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQI 391

[Close]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot
Match: P60027 (General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.5e-57
Identity = 129/385 (33.51%), Postives = 220/385 (57.14%), Query Frame = 0


Query: 47  QVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTAKS 106
           +V +  +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   +
Sbjct: 11  RVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAA 70

Query: 107 MEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQ-KLLIHGEVLA 166
           +  WV  +     + +   L  LR++   +         LNP F+ NL+  LL  G+  +
Sbjct: 71  VALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRIALLGGGKAWS 130

Query: 167 REPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLL-S 226
            +            +  L+ YA  +WE  L  ++ S  A    +++  +    Q GL+ S
Sbjct: 131 DDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKS 190

Query: 227 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 286
               E P +T++GFQFLL++T AQLWY + +Y+  ++ RG+D  +++SF+ +LSF   G+
Sbjct: 191 TEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGK 250

Query: 287 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLS--MSLADSSSRKQGF 346
            Y ++ +++     ++ L + GLV  Q+ RK R + PT+LA NLS  +S A  +  + GF
Sbjct: 251 DYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGF 310

Query: 347 VVVETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVT 406
           +VVETN+RLYAY+ S+L   ++ LFS + Y+ PN+ VA +T+ES+  A  +GITA Q++ 
Sbjct: 311 IVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIH 370

Query: 407 FLQQNAHPRVAERIPSVPENVTDQV 428
           FL+  AHP + ++ P +P  +TDQ+
Sbjct: 371 FLRTRAHPVMLKQTPVLPPTITDQI 391

[Close]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot
Match: O70422 (General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-56
Identity = 128/379 (33.77%), Postives = 217/379 (57.26%), Query Frame = 0


Query: 53  KNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTAKSMEEWVL 112
           +N  + +  L    LD+LY +   C A+ R LP LAK +V++ML+++ P+   ++  WV 
Sbjct: 18  RNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQAAVALWVK 77

Query: 113 PDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQ-KLLIHGEVLAREPMPS 172
            +     + +   L  LR++   +         LNP F+ NL+  LL  G+  + +    
Sbjct: 78  KEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQL 137

Query: 173 NITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLL-SQRDKEA 232
                   +  L+ YA  +WE  L  ++ S  A    +++  +    Q GL+ S    E 
Sbjct: 138 GPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS---QAGLMKSTEPGEP 197

Query: 233 PRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGEAYDIDT 292
           P +T++GFQFLL++T AQLWY + +Y+  ++ RG+D  +++SF+ +LSF   G+ Y ++ 
Sbjct: 198 PCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEG 257

Query: 293 LTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLS--MSLADSSSRKQGFVVVETN 352
           +++     ++ L + GLV  Q+ RK R + PT+LA NLS  +S A  +  + GF+VVETN
Sbjct: 258 MSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETN 317

Query: 353 FRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFLQQNA 412
           +RLYAY+ S+L   ++ LFS + Y+ PN+ VA +T+ES+  A  +GITA Q++ FL+  A
Sbjct: 318 YRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRA 377

Query: 413 HPRVAERIPSVPENVTDQV 428
           HP + ++ P +P  +TDQ+
Sbjct: 378 HPVMLKQNPVLPPTITDQI 392

[Close]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot
Match: Q54C29 (General transcription factor IIH subunit 4 OS=Dictyostelium discoideum OX=44689 GN=gtf2h4 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.5e-50
Identity = 125/413 (30.27%), Postives = 224/413 (54.24%), Query Frame = 0


Query: 59  VASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTAKSMEEWVLPDGVSK 118
           +ASL +  L++LY + + C+AILRSLPP +K+++++ML +D        ++W     + +
Sbjct: 10  LASLDSKDLEELYKDPWTCQAILRSLPPRSKQYILKMLLVDT-YPLSLAKDWSTQASIQQ 69

Query: 119 FKVAVDRLIQLR-VFIETVDR--------------------------KRETTYRLNPTFQ 178
            K ++ +L  L+ +F++ +++                          + E T RLNP FQ
Sbjct: 70  HKESLKKLFDLKIIFLDKINKPIQPQQQQSSQQSSSQQQQQQQQQQQQTEQTIRLNPLFQ 129

Query: 179 ANLQKLLIH-GEVLAREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNI 238
            N+++ L+   +V+           + PS+++L++Y+  QWE  L  L  S    +PS +
Sbjct: 130 DNIKRSLVQVNQVIFSNNSSIKDNHKPPSIDDLDSYSKSQWEKVLYFL--SDDTVQPSKL 189

Query: 239 SSSMMKVFQKGLLSQRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEER----GVD 298
            S ++       L++++ +   +T+ GF+FLL +   Q+W ++  Y+ + E++       
Sbjct: 190 ISELL---LSSNLTKQEGDGLSITSEGFKFLLKDVYTQIWTLLIVYLDDLEKKKGKGSGS 249

Query: 299 PADLISFMLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTK--- 358
             DL+SF+  LSF   G  Y +  L+E+Q+  +  L   GL+ ++       F PT+   
Sbjct: 250 RNDLLSFLFRLSFLNLGRGYLVSELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLII 309

Query: 359 -LATNLSMSLADSSS-------RKQGFVVVETNFRLYAYSSSKLHCEILRLFSRIEYQLP 418
            L T  ++SL  S S       ++QG++V+ETN+RLYAY+SS L   +L LF ++ Y+LP
Sbjct: 310 SLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLP 369

Query: 419 NLTVAAITKESLYNAFKNGITADQMVTFLQQNAHPRVAERIPSVPENVTDQVM 429
           NL V  IT+ES+  A  +GITADQ++ F++ N+HP  A     +P+ V +Q++
Sbjct: 370 NLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQIL 415

[Close]

BLAST of Sed0003361 vs. ExPASy TrEMBL
Match: A0A6J1IIT5 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111477843 PE=3 SV=1)

HSP 1 Score: 717.6 bits (1851), Expect = 3.1e-203
Identity = 362/383 (94.52%), Postives = 374/383 (97.65%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTY+LNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLP+LEELEAYAL QWECFLLQLINSGQA+KPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKE PRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy TrEMBL
Match: A0A5D3CNX3 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007400 PE=3 SV=1)

HSP 1 Score: 715.3 bits (1845), Expect = 1.5e-202
Identity = 360/383 (93.99%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTYRLNPTFQANLQKLLIHGEV+
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVV 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLPSLE+LEAYAL QWECFLLQLINSGQAEKPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKEAPRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+ WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA+Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy TrEMBL
Match: A0A0A0KK55 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_6G517270 PE=3 SV=1)

HSP 1 Score: 711.1 bits (1834), Expect = 2.9e-201
Identity = 358/383 (93.47%), Postives = 374/383 (97.65%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYID PV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLPSLE+LEAYAL QWECFLLQLINSGQAEKPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKEAPRLT SGFQFLLMETNAQLWYIIREYISN+EERGVDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTL++EQRYAIKDLADLGLVKLQQGRK+ WFIPTKLATNLSMSLADSSSRK GFVV
Sbjct: 241 AYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYS+SKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA+Q+VTFL
Sbjct: 301 VETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy TrEMBL
Match: A0A6J1EGA7 (RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111433104 PE=3 SV=1)

HSP 1 Score: 711.1 bits (1834), Expect = 2.9e-201
Identity = 360/383 (93.99%), Postives = 372/383 (97.13%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPVTA
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYGNAFICEAILRSLPPLAKKFVLQMLYIDAPVTA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTY+LNPTFQANLQKLLI GEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYKLNPTFQANLQKLLIQGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLP+LEELEAYAL QWECFLLQLINSGQA+KPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPNLEELEAYALDQWECFLLQLINSGQADKPSNISSSVMKVFQKGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDKE PRLT SGFQFLLMETNAQLWYIIREYISN+EER VDPADLISF+LELSFHVTGE
Sbjct: 181 QRDKETPRLTESGFQFLLMETNAQLWYIIREYISNAEERDVDPADLISFLLELSFHVTGE 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKD WFIPTKLATNLSMSLADSSSRKQGFVV
Sbjct: 241 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDSWFIPTKLATNLSMSLADSSSRKQGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           VETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V AITKESLYNAFKNGITA Q+VTFL
Sbjct: 301 VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAQQIVTFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 QQNAHPRVAERIPSVPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. ExPASy TrEMBL
Match: A0A5A7UBE2 (RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003070 PE=3 SV=1)

HSP 1 Score: 702.6 bits (1812), Expect = 1.0e-198
Identity = 361/408 (88.48%), Postives = 376/408 (92.16%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPAMKLD+LY NAFICEAILRSLPPLAKKFV+QMLYIDAPV+A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDAPVSA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
           KSMEEWVLPDGVSK+KVAVDRLIQLRVFIET DRKRETTYRLNPTFQANLQKLLIHGEVL
Sbjct: 61  KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
           AREPMPSNITVRLPSLE+LEAYAL QWECFLLQLINSGQAEKPSNISSS+MKVFQKGLLS
Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLS 180

Query: 225 Q-------------------------RDKEAPRLTASGFQFLLMETNAQLWYIIREYISN 284
           Q                         RDKEAPRLT SGFQFLLMETNAQLWYIIREYISN
Sbjct: 181 QRLKSCSMYSSLYFARYLIKCYVWYSRDKEAPRLTESGFQFLLMETNAQLWYIIREYISN 240

Query: 285 SEERGVDPADLISFMLELSFHVTGEAYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWF 344
           +EERGVDPADLISF+LELSFHVTGEAYDIDTL++EQRYAIKDLADLGLVKLQQGRK+ WF
Sbjct: 241 AEERGVDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWF 300

Query: 345 IPTKLATNLSMSLADSSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTV 404
           IPTKLATNLSMSLADSSSRKQGFVVVETNFR+YAYSSSKLHCEILRLFSRIEYQLPNL V
Sbjct: 301 IPTKLATNLSMSLADSSSRKQGFVVVETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIV 360

Query: 405 AAITKESLYNAFKNGITADQMVTFLQQNAHPRVAERIPSVPENVTDQV 428
            AITKESLYNAFKNGITA+Q+VTFLQQNAHPRVAERIPSVPENVTDQ+
Sbjct: 361 GAITKESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQI 408

[Close]

BLAST of Sed0003361 vs. TAIR 10
Match: AT4G17020.2 (transcription factor-related )

HSP 1 Score: 611.3 bits (1575), Expect = 6.0e-175
Identity = 302/383 (78.85%), Postives = 342/383 (89.30%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPA+KLDKLY+N FICEAILRSLPPLAKK+V+QMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
             MEEWVL DG SK +VA+DRLIQLR+F E  DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
            REPM S+  ++LPSL+ELE YAL QWECFLLQLINSGQ EK + ISSSMMK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDK+ PRLT SGFQFLLM+TNAQLWYIIREYI N+EER VDPADLISF+LELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AY+++TLTE Q   +KDLADLGLVKLQQGRKD WFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           +ETNFR+YAYS+SKL CEILRLF+RIEYQLPNL   AITKESLYNAF NGIT+DQ++TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQN+HPR A+R+PS+PENVTDQ+
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. TAIR 10
Match: AT4G17020.1 (transcription factor-related )

HSP 1 Score: 611.3 bits (1575), Expect = 6.0e-175
Identity = 302/383 (78.85%), Postives = 342/383 (89.30%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPA+KLDKLY+N FICEAILRSLPPLAKK+V+QMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
             MEEWVL DG SK +VA+DRLIQLR+F E  DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
            REPM S+  ++LPSL+ELE YAL QWECFLLQLINSGQ EK + ISSSMMK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDK+ PRLT SGFQFLLM+TNAQLWYIIREYI N+EER VDPADLISF+LELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AY+++TLTE Q   +KDLADLGLVKLQQGRKD WFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           +ETNFR+YAYS+SKL CEILRLF+RIEYQLPNL   AITKESLYNAF NGIT+DQ++TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQN+HPR A+R+PS+PENVTDQ+
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQI 383

[Close]

BLAST of Sed0003361 vs. TAIR 10
Match: AT4G17020.3 (transcription factor-related )

HSP 1 Score: 611.3 bits (1575), Expect = 6.0e-175
Identity = 302/383 (78.85%), Postives = 342/383 (89.30%), Query Frame = 0


Query: 45  MPQVKIIAKNFMDMVASLPAMKLDKLYHNAFICEAILRSLPPLAKKFVIQMLYIDAPVTA 104
           MPQVKIIAKNFMDMVASLPA+KLDKLY+N FICEAILRSLPPLAKK+V+QMLYID PV A
Sbjct: 1   MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60

Query: 105 KSMEEWVLPDGVSKFKVAVDRLIQLRVFIETVDRKRETTYRLNPTFQANLQKLLIHGEVL 164
             MEEWVL DG SK +VA+DRLIQLR+F E  DRKR T+Y LNPTFQ NLQK +I G VL
Sbjct: 61  TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120

Query: 165 AREPMPSNITVRLPSLEELEAYALGQWECFLLQLINSGQAEKPSNISSSMMKVFQKGLLS 224
            REPM S+  ++LPSL+ELE YAL QWECFLLQLINSGQ EK + ISSSMMK+FQ+GLLS
Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS 180

Query: 225 QRDKEAPRLTASGFQFLLMETNAQLWYIIREYISNSEERGVDPADLISFMLELSFHVTGE 284
           QRDK+ PRLT SGFQFLLM+TNAQLWYIIREYI N+EER VDPADLISF+LELSFHVTG+
Sbjct: 181 QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ 240

Query: 285 AYDIDTLTEEQRYAIKDLADLGLVKLQQGRKDRWFIPTKLATNLSMSLADSSSRKQGFVV 344
           AY+++TLTE Q   +KDLADLGLVKLQQGRKD WFIPTKLATNLS+SLADSS+RK+GFVV
Sbjct: 241 AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV 300

Query: 345 VETNFRLYAYSSSKLHCEILRLFSRIEYQLPNLTVAAITKESLYNAFKNGITADQMVTFL 404
           +ETNFR+YAYS+SKL CEILRLF+RIEYQLPNL   AITKESLYNAF NGIT+DQ++TFL
Sbjct: 301 METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL 360

Query: 405 QQNAHPRVAERIPSVPENVTDQV 428
           QQN+HPR A+R+PS+PENVTDQ+
Sbjct: 361 QQNSHPRCADRVPSIPENVTDQI 383

The following BLAST results are available for this feature:

BLAST of Sed0003361 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977542.1	6.4e-203	94.52	RNA polymerase II transcription factor B subunit 2 [Cucurbita maxima]	[more]
KAG6604444.1	1.9e-202	92.62	General transcription and DNA repair factor IIH subunit TFB2, partial [Cucurbita...	[more]
TYK13130.1	3.2e-202	93.99	RNA polymerase II transcription factor B subunit 2 [Cucumis melo var. makuwa]	[more]
XP_023543805.1	4.1e-202	94.26	RNA polymerase II transcription factor B subunit 2 [Cucurbita pepo subsp. pepo]	[more]
XP_038882460.1	9.2e-202	93.99	general transcription and DNA repair factor IIH subunit TFB2 isoform X1 [Beninca...	[more]

BLAST of Sed0003361 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680U9	8.4e-174	78.85	General transcription and DNA repair factor IIH subunit TFB2 OS=Arabidopsis thal...	[more]
Q92759	6.5e-57	33.51	General transcription factor IIH subunit 4 OS=Homo sapiens OX=9606 GN=GTF2H4 PE=...	[more]
P60027	6.5e-57	33.51	General transcription factor IIH subunit 4 OS=Pan troglodytes OX=9598 GN=GTF2H4 ...	[more]
O70422	1.4e-56	33.77	General transcription factor IIH subunit 4 OS=Mus musculus OX=10090 GN=Gtf2h4 PE...	[more]
Q54C29	4.5e-50	30.27	General transcription factor IIH subunit 4 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Sed0003361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IIT5	3.1e-203	94.52	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A5D3CNX3	1.5e-202	93.99	RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O...	[more]
A0A0A0KK55	2.9e-201	93.47	RNA polymerase II transcription factor B subunit 2 OS=Cucumis sativus OX=3659 GN...	[more]
A0A6J1EGA7	2.9e-201	93.99	RNA polymerase II transcription factor B subunit 2 OS=Cucurbita moschata OX=3662...	[more]
A0A5A7UBE2	1.0e-198	88.48	RNA polymerase II transcription factor B subunit 2 OS=Cucumis melo var. makuwa O...	[more]

BLAST of Sed0003361 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17020.2	6.0e-175	78.85	transcription factor-related	[more]
AT4G17020.1	6.0e-175	78.85	transcription factor-related	[more]
AT4G17020.3	6.0e-175	78.85	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PFAM	PF03849	Tfb2	coord: 58..399 e-value: 3.3E-103 score: 345.4
IPR004598	Transcription factor TFIIH subunit p52/Tfb2	PANTHER	PTHR13152	TFIIH, POLYPEPTIDE 4	coord: 49..399

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003361.1	Sed0003361.1	mRNA
Sed0003361.3	Sed0003361.3	mRNA
Sed0003361.2	Sed0003361.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0001671	ATPase activator activity
molecular_function	GO:0003690	double-stranded DNA binding