Sed0003347 (gene) Chayote v1

Overview


Name	Sed0003347
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP synthase subunit e, mitochondrial
Location	LG04: 47102155 .. 47105091 (-)
RNA-Seq Expression	Sed0003347
Synteny	Sed0003347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGGTACGTTTTTCTTCTCTTTTTGCTTTCCGATCGATCTTGTTGAAAAAGCTATATGCGGAGTCTGATTCAACGATTTTGATCCTTGGCAGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTTCTTCCATTTCATTCTTTTCCTACTTTTTGGTTTTCGGCTGAAAAGTTTAGGTTTATTGACTTAGGATTGCGTTTCTGGCTTCAATGTGTAGATCCCTAGGAAAAATTTGTTTATGTTTTTGAAATTTAGTTGGTATTTTCCTACTTTCGGAAAGATGGATACATTGTAGGAAAGATAGAGCACTTGGTAGGAAATTTGAACAGAAATAGGCTTAAATTTCATAAACAAAAAACAAAAAACAAAATGGTTATCAAACGAGGCTTTAGAATTCTGCCTAATGTTGAGGTTGATTTCGATTATATCCTTATAGCCTTGACCTTTTTAATAGATTGACAAATGCACTTGAATAATTTGTTCCTTTGAAACCGAGTTTTGGAAATGGATGTGGGAGTTTAGTTGTAAATGTAGCAGTGATAACGGATGAGCACGACTTAGAAAACTTAATACAAACATGCAAAGCAAAGCATCTAGAACCACCCGGTACCAACTGATGTGTGGGTGAGTTAAAAATGAAGGGCAATGTATTATTGCACTTGCCACATTATCCATTCCTTTTAAAAAAGACACGTTTTCCAGTGCTCTTCCATGTGAGTTTCATCACATCGGTAAAGTTGTTTTGGGGCATTTTCCAAACAATTTTATAGCTCAAGGATAGAAGTGAAACTTTCTCAGCAACAAGGGTATAATTGGAACTAACCTCAAAATTTAGGGCCTTATGAAGAACTCAATATTCTAGTGAAGGGGGAGAAAATGGACTATACAGTTGACTAGAATATCAATTCAAGAGAGGAATATACTTTCTAGAAATAGTTTACCGCCCAAAAAACCAAAAAGATAATGCCATCAACAGTCTCTAATAGATATCAGACGTTCACTTCAACAATTTGCTGAATTATTTCCTTTTTCAAGATGCCCCAAAGCACCACTTGCTACTCTTGTTTAAGCAGCCCATACATTGAAAACAGGAGTTTCCATATGGTAGGGAAAAAAACATATGATGGTAAAAGGTGATCGAAAGTCTCAATCTGTTATTGAGGAAGAAGGCACTATGAATGTGATAAAGATGGGTTTGGACAATTTTCCTGTATTTTATACCAACCCCCATGCCTATGCCTTGCTATGGTCCTATGGAACGAGAGTACCCAAGAAAGTAAAAAGGAACATCTAATTTTCTCATGCGTCCTCCTTTTCTATTTCAAGTGCCTAATGAATATAGTTATTGTATATTGTTTTAAATTTAATCTTCGTGAAATATAGTTTTTAAAAAATTGATCTAGAATATTGATTCCTTAGAAATGAGGGTCAGATCGATTGATCGTACATATGTAACCTTGAGTTCTAAGGGGAAGAGGTTAGCTATAGATCCAAGGGGATTCCATTCACATTCAATTTCAGTTCAACTCAAATCAATATCATTTCAAAAGCTCATGTTATTTGTTGCTCTCTTTTGAAGCCATTCTGAATTCACCTGCCTGGTTCTAAATGTATACTTCAATTTCTATTTAATCCCCGCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGAGGTATGTCAGCGTCATAACTGAGGCCTCAGTTGAATTTGAAAGGGAAATAATAAATGGTTGTTGGTCACAATCTATTTTCCTTTATACTTTTTTTGTTCCTTGTTGCATTGGATGGCTCTATATTCATTGAAGAGTCATGTAGATGTTTCTAACCTCGGTCTTAATGACCAATATTTGAGTCACAATTCATTCGGATGGGTGGATGAGAGGACTGTCTGACCATGATTCCTTTCTTTGATTGAAATGAATAATTTGTTTGTCATCTTTCTTGGTGTAGACTGCCGAAGATATCGTTATTTCATTTTTAGTTTATCAGTCAGTCTTAATGTGTATGGTCATAGATTGTTAATACGTATTGTCTAGGATGGACCAGTTTTCAAGAGTAGACTAATCGAAATATTGAGAAATGTAGCTTTTAAAGTGTCGAAATATATTTTGATGAAAAACATTGTAAAACTGAAATTGAAGTCTCGGAAATGTGTTTTCGGATTTTTGGTCTAGAAAAGGGGAGTTGCAGAAAAAGAAAGTGCTCAAATAATCAGAAGAGCTAACCTAGCCGTTTCATATGGAGGCAGGTTTGAGAAGTTAAAATAAGCTCTGAAGATAAATCCTACTGTTGTGTGCTGTTGTAGGGTTAAGTAGTTGACTTTTTTTTTTTTTTTTTGATACCTGTGACTATAAGGACCACCTTGTGTGTATCACGTCTATTGTCACGGGAAATACCGCCTGATCTTACATTATTTAGATGTCAAAGAAATACTTAGAAACTTAATTTCTAAGTAGGTGGTCACCATGGATTGAATTCATCATCTCTTCTCATTGACCTTCTTGACCATTATGCCACTTCATGTTGGTTAGTAGACTTATGCGATTTGTGGATTTGAACCTATGTAGGAGTGGATTTGAACCTATGTAGGAT

mRNA sequence

ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGAGGGGAGTTGCAGAAAAAGAAAGTGCTCAAATAATCAGAAGAGCTAACCTAGCCGTTTCATATGGAGGCAGGTTTGAGAAGTTAAAATAAGCTCTGAAGATAAATCCTACTGTTGTGTGCTGTTGTAGGGTTAAGTAGTTGACTTTTTTTTTTTTTTTTTGATACCTGTGACTATAAGGACCACCTTGTGTGTATCACGTCTATTGTCACGGGAAATACCGCCTGATCTTACATTATTTAGATGTCAAAGAAATACTTAGAAACTTAATTTCTAAGTAGGTGGTCACCATGGATTGAATTCATCATCTCTTCTCATTGACCTTCTTGACCATTATGCCACTTCATGTTGGTTAGTAGACTTATGCGATTTGTGGATTTGAACCTATGTAGGAGTGGATTTGAACCTATGTAGGAT

Coding sequence (CDS)

ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGA

Protein sequence

MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH

Homology

[Close]

BLAST of Sed0003347 vs. NCBI nr
Match: XP_038887516.1 (uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetical protein Csa_020535 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. NCBI nr
Match: KAG7022252.1 (hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSG+STLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. NCBI nr
Match: XP_022952755.1 (uncharacterized protein LOC111455357 [Cucurbita moschata])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. NCBI nr
Match: KAF4388402.1 (hypothetical protein G4B88_013239 [Cannabis sativa])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]

BLAST of Sed0003347 vs. NCBI nr
Match: XP_022136306.1 (uncharacterized protein LOC111008022 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGS KLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSFGLVYGSFKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A0A0K2E7 (ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A6J1GMM8 (ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455357 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A7J6FXI7 (ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]

BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A6J1C358 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008022 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGS KLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSFGLVYGSFKLKYLQAKAKSHKKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A7J6GZJ8 (ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=G4B88_013239 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]

BLAST of Sed0003347 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPG YSGTSTLAL+ARASAF  GL+YG++KLK L+ K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Sed0003347 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPG YSGTS+LAL+ARASAF  GLVYG++KLK L+ K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Sed0003347 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-10
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPG YSGTS+LAL+ARASAF  GLVYG++KLK    K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLK---IKSMSQKKVEATAHH 50

[Close]

BLAST of Sed0003347 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAK 41
          MA PPG YSGTSTLAL+ARASAF  GL+YG++KLK L+ K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

The following BLAST results are available for this feature:

BLAST of Sed0003347 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887516.1	6.5e-17	94.34	uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetica...	[more]
KAG7022252.1	1.9e-16	92.45	hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952755.1	1.9e-16	92.45	uncharacterized protein LOC111455357 [Cucurbita moschata]	[more]
KAF4388402.1	3.2e-16	94.34	hypothetical protein G4B88_013239 [Cannabis sativa]	[more]
XP_022136306.1	3.2e-16	92.45	uncharacterized protein LOC111008022 [Momordica charantia]	[more]

BLAST of Sed0003347 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2E7	3.2e-17	94.34	ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920...	[more]
A0A6J1GMM8	9.2e-17	92.45	ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455...	[more]
A0A7J6FXI7	1.6e-16	94.34	ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057...	[more]
A0A6J1C358	1.6e-16	92.45	ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A7J6GZJ8	1.6e-16	94.34	ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=G4B88_013239...	[more]

BLAST of Sed0003347 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01130.1	8.0e-13	71.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.1	1.4e-12	67.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.2	1.7e-10	66.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01130.2	1.6e-08	72.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008386	ATP synthase, F0 complex, subunit E, mitochondrial	PFAM	PF05680	ATP-synt_E	coord: 12..51 e-value: 6.2E-5 score: 23.3
None	No IPR available	PANTHER	PTHR36028	OSJNBB0050O03.8 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003347.1	Sed0003347.1	mRNA
Sed0003347.2	Sed0003347.2	mRNA
Sed0003347.3	Sed0003347.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity