Sed0003347 (gene) Chayote v1

Overview
NameSed0003347
Typegene
OrganismSechium edule (Chayote v1)
DescriptionATP synthase subunit e, mitochondrial
LocationLG04: 47102155 .. 47105091 (-)
RNA-Seq ExpressionSed0003347
SyntenySed0003347
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGGTACGTTTTTCTTCTCTTTTTGCTTTCCGATCGATCTTGTTGAAAAAGCTATATGCGGAGTCTGATTCAACGATTTTGATCCTTGGCAGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGTTTGTTTCTTCCATTTCATTCTTTTCCTACTTTTTGGTTTTCGGCTGAAAAGTTTAGGTTTATTGACTTAGGATTGCGTTTCTGGCTTCAATGTGTAGATCCCTAGGAAAAATTTGTTTATGTTTTTGAAATTTAGTTGGTATTTTCCTACTTTCGGAAAGATGGATACATTGTAGGAAAGATAGAGCACTTGGTAGGAAATTTGAACAGAAATAGGCTTAAATTTCATAAACAAAAAACAAAAAACAAAATGGTTATCAAACGAGGCTTTAGAATTCTGCCTAATGTTGAGGTTGATTTCGATTATATCCTTATAGCCTTGACCTTTTTAATAGATTGACAAATGCACTTGAATAATTTGTTCCTTTGAAACCGAGTTTTGGAAATGGATGTGGGAGTTTAGTTGTAAATGTAGCAGTGATAACGGATGAGCACGACTTAGAAAACTTAATACAAACATGCAAAGCAAAGCATCTAGAACCACCCGGTACCAACTGATGTGTGGGTGAGTTAAAAATGAAGGGCAATGTATTATTGCACTTGCCACATTATCCATTCCTTTTAAAAAAGACACGTTTTCCAGTGCTCTTCCATGTGAGTTTCATCACATCGGTAAAGTTGTTTTGGGGCATTTTCCAAACAATTTTATAGCTCAAGGATAGAAGTGAAACTTTCTCAGCAACAAGGGTATAATTGGAACTAACCTCAAAATTTAGGGCCTTATGAAGAACTCAATATTCTAGTGAAGGGGGAGAAAATGGACTATACAGTTGACTAGAATATCAATTCAAGAGAGGAATATACTTTCTAGAAATAGTTTACCGCCCAAAAAACCAAAAAGATAATGCCATCAACAGTCTCTAATAGATATCAGACGTTCACTTCAACAATTTGCTGAATTATTTCCTTTTTCAAGATGCCCCAAAGCACCACTTGCTACTCTTGTTTAAGCAGCCCATACATTGAAAACAGGAGTTTCCATATGGTAGGGAAAAAAACATATGATGGTAAAAGGTGATCGAAAGTCTCAATCTGTTATTGAGGAAGAAGGCACTATGAATGTGATAAAGATGGGTTTGGACAATTTTCCTGTATTTTATACCAACCCCCATGCCTATGCCTTGCTATGGTCCTATGGAACGAGAGTACCCAAGAAAGTAAAAAGGAACATCTAATTTTCTCATGCGTCCTCCTTTTCTATTTCAAGTGCCTAATGAATATAGTTATTGTATATTGTTTTAAATTTAATCTTCGTGAAATATAGTTTTTAAAAAATTGATCTAGAATATTGATTCCTTAGAAATGAGGGTCAGATCGATTGATCGTACATATGTAACCTTGAGTTCTAAGGGGAAGAGGTTAGCTATAGATCCAAGGGGATTCCATTCACATTCAATTTCAGTTCAACTCAAATCAATATCATTTCAAAAGCTCATGTTATTTGTTGCTCTCTTTTGAAGCCATTCTGAATTCACCTGCCTGGTTCTAAATGTATACTTCAATTTCTATTTAATCCCCGCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGAGGTATGTCAGCGTCATAACTGAGGCCTCAGTTGAATTTGAAAGGGAAATAATAAATGGTTGTTGGTCACAATCTATTTTCCTTTATACTTTTTTTGTTCCTTGTTGCATTGGATGGCTCTATATTCATTGAAGAGTCATGTAGATGTTTCTAACCTCGGTCTTAATGACCAATATTTGAGTCACAATTCATTCGGATGGGTGGATGAGAGGACTGTCTGACCATGATTCCTTTCTTTGATTGAAATGAATAATTTGTTTGTCATCTTTCTTGGTGTAGACTGCCGAAGATATCGTTATTTCATTTTTAGTTTATCAGTCAGTCTTAATGTGTATGGTCATAGATTGTTAATACGTATTGTCTAGGATGGACCAGTTTTCAAGAGTAGACTAATCGAAATATTGAGAAATGTAGCTTTTAAAGTGTCGAAATATATTTTGATGAAAAACATTGTAAAACTGAAATTGAAGTCTCGGAAATGTGTTTTCGGATTTTTGGTCTAGAAAAGGGGAGTTGCAGAAAAAGAAAGTGCTCAAATAATCAGAAGAGCTAACCTAGCCGTTTCATATGGAGGCAGGTTTGAGAAGTTAAAATAAGCTCTGAAGATAAATCCTACTGTTGTGTGCTGTTGTAGGGTTAAGTAGTTGACTTTTTTTTTTTTTTTTTGATACCTGTGACTATAAGGACCACCTTGTGTGTATCACGTCTATTGTCACGGGAAATACCGCCTGATCTTACATTATTTAGATGTCAAAGAAATACTTAGAAACTTAATTTCTAAGTAGGTGGTCACCATGGATTGAATTCATCATCTCTTCTCATTGACCTTCTTGACCATTATGCCACTTCATGTTGGTTAGTAGACTTATGCGATTTGTGGATTTGAACCTATGTAGGAGTGGATTTGAACCTATGTAGGAT

mRNA sequence

ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGAGGGGAGTTGCAGAAAAAGAAAGTGCTCAAATAATCAGAAGAGCTAACCTAGCCGTTTCATATGGAGGCAGGTTTGAGAAGTTAAAATAAGCTCTGAAGATAAATCCTACTGTTGTGTGCTGTTGTAGGGTTAAGTAGTTGACTTTTTTTTTTTTTTTTTGATACCTGTGACTATAAGGACCACCTTGTGTGTATCACGTCTATTGTCACGGGAAATACCGCCTGATCTTACATTATTTAGATGTCAAAGAAATACTTAGAAACTTAATTTCTAAGTAGGTGGTCACCATGGATTGAATTCATCATCTCTTCTCATTGACCTTCTTGACCATTATGCCACTTCATGTTGGTTAGTAGACTTATGCGATTTGTGGATTTGAACCTATGTAGGAGTGGATTTGAACCTATGTAGGAT

Coding sequence (CDS)

ATGGCGATTCCTCCAGGCCCTTATTCTGGAACCAGCACCCTCGCCTTGCTTGCTCGTGCTTCCGCCTTCTCTGCTGGACTTGTCTACGGCAGCCTCAAGCTCAAGTACCTTCAGGCGAAGGCAAAATCTCACAAGAAAGCTGAAGCAAAAGCTCATCACTGA

Protein sequence

MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH
Homology
[Close]
BLAST of Sed0003347 vs. NCBI nr
Match: XP_038887516.1 (uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetical protein Csa_020535 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. NCBI nr
Match: KAG7022252.1 (hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSG+STLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGSSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. NCBI nr
Match: XP_022952755.1 (uncharacterized protein LOC111455357 [Cucurbita moschata])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. NCBI nr
Match: KAF4388402.1 (hypothetical protein G4B88_013239 [Cannabis sativa])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]
BLAST of Sed0003347 vs. NCBI nr
Match: XP_022136306.1 (uncharacterized protein LOC111008022 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGS KLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSFGLVYGSFKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A0A0K2E7 (ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A6J1GMM8 (ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455357 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MTLPPGPYSGTSTLALVARASAFSVGLVYGSLKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A7J6FXI7 (ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A6J1C358 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008022 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA+PPGPYSGTSTLAL+ARASAFS GLVYGS KLKYLQAKAKSHKKAEAKAHH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFSFGLVYGSFKLKYLQAKAKSHKKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match: A0A7J6GZJ8 (ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=G4B88_013239 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPGPYSGTSTLAL+ARASAFS GLVYGSLKLKYLQAKAKSHKKAEAKAHH
Sbjct: 42 MAPPPGPYSGTSTLALVARASAFSIGLVYGSLKLKYLQAKAKSHKKAEAKAHH 94

[Close]
BLAST of Sed0003347 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 8.0e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          MA PPG YSGTSTLAL+ARASAF  GL+YG++KLK L+ K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]
BLAST of Sed0003347 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPG YSGTS+LAL+ARASAF  GLVYG++KLK L+ K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]
BLAST of Sed0003347 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-10
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAKAKSHKKAEAKAHH 54
          M +PPG YSGTS+LAL+ARASAF  GLVYG++KLK    K+ S KK EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLK---IKSMSQKKVEATAHH 50

[Close]
BLAST of Sed0003347 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MAIPPGPYSGTSTLALLARASAFSAGLVYGSLKLKYLQAK 41
          MA PPG YSGTSTLAL+ARASAF  GL+YG++KLK L+ K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

The following BLAST results are available for this feature:
BLAST of Sed0003347 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887516.16.5e-1794.34uncharacterized protein LOC120077638 [Benincasa hispida] >KGN43194.1 hypothetica... [more]
KAG7022252.11.9e-1692.45hypothetical protein SDJN02_15983 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022952755.11.9e-1692.45uncharacterized protein LOC111455357 [Cucurbita moschata][more]
KAF4388402.13.2e-1694.34hypothetical protein G4B88_013239 [Cannabis sativa][more]
XP_022136306.13.2e-1692.45uncharacterized protein LOC111008022 [Momordica charantia][more]
BLAST of Sed0003347 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0003347 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2E73.2e-1794.34ATP synthase subunit e, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G007920... [more]
A0A6J1GMM89.2e-1792.45ATP synthase subunit e, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111455... [more]
A0A7J6FXI71.6e-1694.34ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=F8388_024057... [more]
A0A6J1C3581.6e-1692.45ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A7J6GZJ81.6e-1694.34ATP synthase subunit e, mitochondrial OS=Cannabis sativa OX=3483 GN=G4B88_013239... [more]
BLAST of Sed0003347 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01130.18.0e-1371.70unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.11.4e-1267.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G15320.21.7e-1066.04unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G01130.21.6e-0872.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008386ATP synthase, F0 complex, subunit E, mitochondrialPFAMPF05680ATP-synt_Ecoord: 12..51
e-value: 6.2E-5
score: 23.3
NoneNo IPR availablePANTHERPTHR36028OSJNBB0050O03.8 PROTEINcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003347.1Sed0003347.1mRNA
Sed0003347.2Sed0003347.2mRNA
Sed0003347.3Sed0003347.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function GO:0015078 proton transmembrane transporter activity