Sed0003332 (gene) Chayote v1

Overview
NameSed0003332
Typegene
OrganismSechium edule (Chayote v1)
Descriptionstress-associated endoplasmic reticulum protein 2-like
LocationLG07: 866974 .. 870412 (-)
RNA-Seq ExpressionSed0003332
SyntenySed0003332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAACAAAATTCTATTGAAAGGTAAAAAAAATCTCACTCTCAATTTTGGTGAAATTAAAAAAAATCCCTAAATTGCCCATCGGAGGATCAGGTCAATATTCAATCTGTTTGGATCAGACCGGTGACCGGGGAGGAGACTCGCCGGCCGGCCAAGAGGAGGATCGATCACTGCAATTTTTCTAATCGCTCCGTTTTCATTGTGTCTCCGGCAACCCCATTTCCTGGCAAAATCATGGTAATTTCTTCCCCTTTTCGTTACCCTCTTAGATTTGCGATTGCGTATGATTTTTGTTCTAGGTTTTGAATCTATGATTCCTGATATTGATCGCTCATCCTGAGATGGATTTTCTTTCGTTTTGCATTTTGGCTAATTGTCTTCTATTGCATACAATTCCGAAATTGTAGGTCCATTAGATAACCATTTGTTTTTTCCTTTTTTATTTTTTAAACTTAAGTTTGCATTTACTTAAATTCTCTCGATATTATAATTCCATAAATTAAAACAATTATTTGGAAACTATTTTTTTTTAGACCCTCTTTCATTTGTTTTTAGTTTATAGTTTTTGAAATTTAAGCCTGCAACATCACATCACCTTATGTTTTTTCTTACTTAAATATCTACATCTTACCTATATTTAAAAAAAAAACAAATAAATTTAGAAACAAAAGTAATAGCTTTCAAAAACATATTTTGATTTTTGAAATTTAGTTGGCATTCACATAATTTTTTAAAAAAAGATGAAACAAATGGTAGGAAATTGGAGTAAAACTAAACTTAAATTTAAAAAACCAAAAACGAAAACTCAAATGATTATTAAACATGACATTAATTTTCAAATTTTTGTTTGATTTTTTAGAAACAGAAATAAAAGGTAGATATCAAAATAATGAAAATTATAAGTTGGAGTAGTAGCCATATACTTAAATATATATAAAAAATCAATTTGTGGTCTTTTGACAATGTAGGACTTGATTAATTAGTAATTTGGAACAAATGATAGCCTTTGTTGTGGAATCTTTGAAGAGATTTCGAAGTCAGTATCGGCCTAAATCTCTTACTGAATCCTAGTTGAGAATGTTCATAAGAATAGAGCAAAAACAGTGTAGATTACTGGAGGGAACACTTGTGTCAGTATAGAAAAATATTGGACGTTCAAATCGTTAATGTTGTTTCTTTATTCTGTTCTATGTTTTGTGAAAATCAAGTCTTAGCACAAGAATAGTTGGAAACAGGTATATCTACTAGGGCTAATTGATGGTTGTTTTCTCAAGTCTCAATTTTGTAATATACATTTTTTTTATATATAGTTTTAGGTGCCTTTATGAACAATACTTTGATAAGTCTCTGCTTTTGTAGACAACATCAAGGCGTCTTGCTGGCCGAAAGGTGGTGAGGTTCGACAGAAATATCAGTAAGAGACGAGCTGTTCCAGAAACAACTGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTCGTCATTGGATCGTGTAAGATCAATCCTTTGTAGTGTTATATCATATAAGTTTTACTTCATCTGATGAATAGTTTGTAGGTTCAGTTGTGGCTACCTTTTTTTTATAACTGAGAAGTTGGAGCTTAGCTTCTCTATACCCGGGTACCTGCTCGCTGCACCCAAGGCGTTGTGCTACCTTTTTATTAAACCAAGTATACGAGTTTTAGTTCTAGGTAGATGGAGGAGCTAAGAGCAAAGAAAGGCAATTGTCTTAATTTTTCGGGCTCATAGTAGTATGTTAAAAAATGATGTTTTAAGTGTTCCTTTAACTTGAACCGTTTTATGTTTTTTCTCGACCAATCGAGCTATCCGAGGTTGATGGTGCATTTGGAAAGATCTTTTAGTATTCATTTCTAGATTCACCAGATGATCCTTCGTCAATATTACGTTTACTTCCATTTTTCATGTCTATATTTCGAGTTCAAACCTCTAATATTTTGCTAGTCTTTCCTTCCTTCACTTGTTAAAGAGGAAGTCTCCCCAAGAACTTATTTCCTCCGAGTTCTCATAGCATTTATCTCTGTTGCACATTTGTATTAGGCCAGTTTCGAGATCCTAAGATATTAGATAATATAGAGTTTCACCTCAAAACGAATTGATAGTAAGGGGAGTAGCTCATATCTCTTAAAAGATGTTGAAGACTCCTCATCTTTCCAACATGAAATGAAATGAATATCTCTAACATCCTCCCTCAAGATGGTGCCATATAAGGAAGACCATCTTTGATTAGATATGAATTTTAGGATCAAAATACCCACTTTGGCTTACTAGCTTGGGTTGGATATGAAATTTTGAGATCAAATACCTGCTTAAGTTTTTGTCTGCTTGGGTGGGGTCCAAATCACCGCTTTTTTTACCCGCTTGGGTCGGATCGGAATTTGAAGGACCAGTAACTCACATGGAGCTCTGATACGATAGTAGATAGTATGAGATTCCACCTCAAAACCAATTAGTAGGAAGGGAAGTAGCTCATATCACTTATAAGGAAGTTGAAGACTTCTTAACTTTACAATGTGAGACAAGATGAATATCTCCAATATAGGTTGTGGTTTTGCTCTCAACCTCACACTTCGATAGAATGAAAGCAAAATTTCTTGGATAGGATCACGATCAATAGTAGGGATATTTTAGCAAATAGTTGGGATTTTGTCAAAGTAGTTGGGTTACAAATAGAGATAATGGAGAAGAAGAAACGTATGCAATATTTTGACCCTTTTGATAATAGGTCTTGAGTGAGCTCAAATAAGAGAGGATTCAGTAAAACCAGGTTCTATCATGGTGAACGGTTGCATTCTGTTGCATATAATATTAGAGGGAATAGGTTTAATCTGTGGTCATCCTCATAAAAACAAAATCTACGACGATATACCCACCAAATCTTATACAAAAATAAATTTGTATGACTTTTGTATGTTAGATTTATATCAACACAAGACAGGATTTTTTCAACTTGTCTTGTAATAGGTGGATCATTGGATGAATTGAATTATCCAAGTAGATACCATGGTTTTACCTCATCATCCTAGAACAACCTTCATTACTTGTTTTACTATGGAAGTCTGCTGAGATTACCATTGAATATCTTTCGGTTGCGAAATCGTTTTGATCATGATACGAAAAACGAGCAAACTTGTTATTCTCTATTTTCCATTCAATCAAGGTATTGTAATTGTTATTATTGTTACTGATCTTTGTTTGTTCAACAGCTCTCTTCCAGATAACCAGGACATCAACAGCCGGGGGAATGGCTTAATGTGATGCTCTTGATCTTGAGAATGGTTTTACAGTTTGATCTCGTGGAAAAATAATTTATTTTTATTTATTTATTTATTATTTTTATGAAAAAAGGAATTTTGATGATTGAATTTTTACAATTTTCTGCTTTGACATCGTAT

mRNA sequence

AAAAAAAACAAAATTCTATTGAAAGGTAAAAAAAATCTCACTCTCAATTTTGGTGAAATTAAAAAAAATCCCTAAATTGCCCATCGGAGGATCAGGTCAATATTCAATCTGTTTGGATCAGACCGGTGACCGGGGAGGAGACTCGCCGGCCGGCCAAGAGGAGGATCGATCACTGCAATTTTTCTAATCGCTCCGTTTTCATTGTGTCTCCGGCAACCCCATTTCCTGGCAAAATCATGACAACATCAAGGCGTCTTGCTGGCCGAAAGGTGGTGAGGTTCGACAGAAATATCAGTAAGAGACGAGCTGTTCCAGAAACAACTGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTCGTCATTGGATCCTCTCTTCCAGATAACCAGGACATCAACAGCCGGGGGAATGGCTTAATGTGATGCTCTTGATCTTGAGAATGGTTTTACAGTTTGATCTCGTGGAAAAATAATTTATTTTTATTTATTTATTTATTATTTTTATGAAAAAAGGAATTTTGATGATTGAATTTTTACAATTTTCTGCTTTGACATCGTAT

Coding sequence (CDS)

ATGACAACATCAAGGCGTCTTGCTGGCCGAAAGGTGGTGAGGTTCGACAGAAATATCAGTAAGAGACGAGCTGTTCCAGAAACAACTGTTAAGAAGGGGAAGGAGTATCCTGTTGGGCCCCTGCTGCTTGGATTCTTCATATTCGTCGTCATTGGATCCTCTCTTCCAGATAACCAGGACATCAACAGCCGGGGGAATGGCTTAATGTGA

Protein sequence

MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSLPDNQDINSRGNGLM
Homology
[Close]
BLAST of Sed0003332 vs. NCBI nr
Match: KAG6781411.1 (hypothetical protein POTOM_014312 [Populus tomentosa])

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-19
Identity = 55/79 (69.62%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGS------- 60
          MTTSRRLA RKV RFD+NIS+R AVPETT KKGK+YPVGPLLLGFFIFVVIGS       
Sbjct: 1  MTTSRRLADRKVNRFDKNISRRGAVPETTTKKGKDYPVGPLLLGFFIFVVIGSYFASPSK 60

Query: 61 ----SLPDNQDINSRGNGL 69
              S+PDNQD + R +GL
Sbjct: 61 SRIISIPDNQDSHRRRHGL 79

[Close]
BLAST of Sed0003332 vs. NCBI nr
Match: XP_022155455.1 (stress-associated endoplasmic reticulum protein 2-like [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKVVRF+RNI+KR AVPETTVKKGK+YPVGPLLLGFF+FVVIGSSL
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. NCBI nr
Match: KAF4390489.1 (hypothetical protein F8388_005986 [Cannabis sativa] >KAF4404748.1 hypothetical protein G4B88_006134 [Cannabis sativa])

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGS-----SL 60
          MTTSRRL+ RKV +FD+NI++R +VPETT KKGK+YPVGP+LLGFFIFVVIGS     SL
Sbjct: 1  MTTSRRLSDRKVEKFDKNITRRGSVPETTAKKGKDYPVGPILLGFFIFVVIGSFTIVFSL 60

Query: 61 PDNQDINSRGNGLM 70
           DNQD ++R +G++
Sbjct: 61 SDNQDSHNRRHGII 74

[Close]
BLAST of Sed0003332 vs. NCBI nr
Match: XP_023004123.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >KAG6592968.1 Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025380.1 Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 3.8e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKV +FDRNI+KR AVPETTVKKGK+YPVGPLLLGFFIFVVIGSSL
Sbjct: 1  MTTSRRLADRKVGKFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. NCBI nr
Match: XP_022960535.1 (stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_023514629.1 stress-associated endoplasmic reticulum protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 8.5e-17
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKV +FDRNI++R AVPETTVKKGK+YPVGPLLLGFFIFVVIGSSL
Sbjct: 1  MTTSRRLADRKVGKFDRNITRRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match: A0A6J1DMG9 (stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX=3673 GN=LOC111022594 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKVVRF+RNI+KR AVPETTVKKGK+YPVGPLLLGFF+FVVIGSSL
Sbjct: 1  MTTSRRLADRKVVRFERNITKRGAVPETTVKKGKDYPVGPLLLGFFVFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match: A0A7J6ICE1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005986 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.4e-18
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGS-----SL 60
          MTTSRRL+ RKV +FD+NI++R +VPETT KKGK+YPVGP+LLGFFIFVVIGS     SL
Sbjct: 1  MTTSRRLSDRKVEKFDKNITRRGSVPETTAKKGKDYPVGPILLGFFIFVVIGSFTIVFSL 60

Query: 61 PDNQDINSRGNGLM 70
           DNQD ++R +G++
Sbjct: 61 SDNQDSHNRRHGII 74

[Close]
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match: A0A6J1KYK6 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111497550 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKV +FDRNI+KR AVPETTVKKGK+YPVGPLLLGFFIFVVIGSSL
Sbjct: 1  MTTSRRLADRKVGKFDRNITKRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match: A0A6J1H9C4 (stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111461245 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKV +FDRNI++R AVPETTVKKGK+YPVGPLLLGFFIFVVIGSSL
Sbjct: 1  MTTSRRLADRKVGKFDRNITRRGAVPETTVKKGKDYPVGPLLLGFFIFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match: A0A4U5QJ64 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000099540 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-17
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTSRRLA RKV RFD+NIS+R AVPETT KKGK+YPVGPLLLGFFIFVVIGSSL
Sbjct: 1  MTTSRRLAERKVSRFDKNISRRGAVPETTTKKGKDYPVGPLLLGFFIFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTS+RLA RK+ +FD+NI KR  VPETT KKGK+YPVGP+LLGFF+FVVIGSSL
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSL 55

[Close]
BLAST of Sed0003332 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1  MTTSRRLAGRKVVRFDRNISKRRAVPETTVKKGKEYPVGPLLLGFFIFVVIGSSL 56
          MTTS+RLA RK+ +FD+NI KR  VPETT KKGK+YPVGP+LLGFF+FVVIGSSL
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSL 55

The following BLAST results are available for this feature:
BLAST of Sed0003332 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6781411.15.3e-1969.62hypothetical protein POTOM_014312 [Populus tomentosa][more]
XP_022155455.11.0e-1789.09stress-associated endoplasmic reticulum protein 2-like [Momordica charantia][more]
KAF4390489.11.3e-1766.22hypothetical protein F8388_005986 [Cannabis sativa] >KAF4404748.1 hypothetical p... [more]
XP_023004123.13.8e-1789.09stress-associated endoplasmic reticulum protein 2-like [Cucurbita maxima] >KAG65... [more]
XP_022960535.18.5e-1787.27stress-associated endoplasmic reticulum protein 2-like [Cucurbita moschata] >XP_... [more]
BLAST of Sed0003332 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0003332 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DMG94.9e-1889.09stress-associated endoplasmic reticulum protein 2-like OS=Momordica charantia OX... [more]
A0A7J6ICE16.4e-1866.22Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005986 PE=3 SV=1[more]
A0A6J1KYK61.8e-1789.09stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita maxima OX=36... [more]
A0A6J1H9C44.1e-1787.27stress-associated endoplasmic reticulum protein 2-like OS=Cucurbita moschata OX=... [more]
A0A4U5QJ645.4e-1787.27Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000099540 PE=3 SV=1[more]
BLAST of Sed0003332 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27350.11.3e-1876.36Ribosome associated membrane protein RAMP4 [more]
AT1G27330.11.3e-1876.36Ribosome associated membrane protein RAMP4 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 6..55
e-value: 8.1E-16
score: 57.7
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 1..59
NoneNo IPR availablePANTHERPTHR15601:SF23OS11G0637501 PROTEINcoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003332.1Sed0003332.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane