Sed0003261 (gene) Chayote v1

Overview


Name	Sed0003261
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG08: 967715 .. 969628 (-)
RNA-Seq Expression	Sed0003261
Synteny	Sed0003261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGAACGAGCGAGCGAAGCAGAGCAATTTCCGTTATCCATTCTCTCTCTCGAAGATTTTTCTGCTGGAAAAAATATCCACAAAAATTAGGGTTTCTTTGCGATCTTTGACCTTTCAATTCGATTTCAACTGTTCAATCATGGTTACTGATTCAATCACCAATGCTTCAATTTCTTTGGCTCCTAACGCTCGGGATTTGCCCTTGCCCAAGAAGAACAGGGTGAGGACTCAAAATCTTCTCGTTTTTGTTTTTATTTTTTGTTTTGATTTCAATGCTAGAGAGTTTGTTTTTGTTGATTTTGGTTTTGATTTCTGTAATTTGTGGTAATTGTTTTGGTTGGGGGTTTTAGGTTAGGTATTCCAAATTGAAGCAGTCGAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTATAGCTACTAATTATGTTTGGTTCTCTGTTGATTGATTGAATATATCTATGGAGTGGGATTTATGCATGTGAGAATTTTGATTTTAATCGACATTTGGGTTCACGAGTTATAGGTGCTGTAAGGAACAAAAAATGGAATGAAGAAGACAACCGAGTTGACTCAGTGGTCGTCGAAACGAGGGAAGATGATAATCTTTCCTCTAAGAAAGTAAATATGAGAGAAATAGGAGAAGAGAACGGCGGATCGGTCCACCACCATGTCGATTTCTCGGAGTCGTCATCCAATAGCCCCGCTAGTGTTGGCAGTAGAATCTTGGGTGGTAATGGTTCGGGTCCTCTTTTTACTGAGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGTTCTAGTGGTTGTCGATCAGGGAGTGTGACGGAAGAGGAGATAGGAGAAGAAGATGATGACTGCTTTGATGATTGGGAGGCTATTGCCGATTCCCTAGCCGCCAGTGAGAAGCAACAGGATCAATGTTCTGAATCTTCCACTAGGGGTAATGTTGTTCCCCAATTGGGTTCTTGCGGAGATAGTAGAAATGAGTTGGGTGTAGGAGATGGTGACTCAAGTATTGAACGTGGGGGAATTGTGCGGAGCGCTTCAATGAATTGCCGAGCATGGAGGCCTGATGATACCTTTCGTCCTCAGAGTTTGCCCATGCTGTCGAAGCAGCTTAGTTTACCGAATACAGACCGGCGTTTTGGATGTGAAGGCATCTCTTGGTCCTGTGGTGGTGTTATGCCTGCGCCTACATCTTGTCCAATTTGCTTTGAAGATTTGGACCTTACAGACTCAAGCTTTTTACCTTGTTTCTGTGGATTCCGGCTTTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGAACATGGTCCTTCCGACAATGAGACAAATGTACATGGTGGCAGCCCAACATTCCCAATGGCTCGTTCTTGTAGCACGATTTCAAGGTCTTAGGTAGTGGTCAGTTTCTGTGGTTTATGTCCGTTTTTTGTTCCTGCATCTCTTTGGGTATTTGAGTGTTGAAGTATGTTTATGAGACTGAGAACCTTTAACTGATCTGCTTCGTACATGAGTGTGGCTCTTAAATTGGGGTTCACCTGCCAATGTAGAGGACTTATTTCGGACTTGATATGTGAATACTGAATAGACAAGGTGGTATAGAAATTAATACATGGAATAATGATACAACAATTGTTACTATTATCTTATTTTGTGCTTGCATATATATCATATGAATGCTGAACTGTTCAATTTAATACTTTCCTCTTTAGTCTTACTATTTTTATGAGATATAGTGTCATGATTGACTTCTTACGTGCGGTTTTATAGAATATGAGTCTCAGAAGTATATACACTAGAGAATAGAGATGTGGAAATATTTGTAATAACTTGTATGTTACACAACTAATTGTTCAGTGCTTTCGTTCATAGCCAGC

mRNA sequence

AAACGAACGAGCGAGCGAAGCAGAGCAATTTCCGTTATCCATTCTCTCTCTCGAAGATTTTTCTGCTGGAAAAAATATCCACAAAAATTAGGGTTTCTTTGCGATCTTTGACCTTTCAATTCGATTTCAACTGTTCAATCATGGTTACTGATTCAATCACCAATGCTTCAATTTCTTTGGCTCCTAACGCTCGGGATTTGCCCTTGCCCAAGAAGAACAGGGTTAGGTATTCCAAATTGAAGCAGTCGAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAGGAACAAAAAATGGAATGAAGAAGACAACCGAGTTGACTCAGTGGTCGTCGAAACGAGGGAAGATGATAATCTTTCCTCTAAGAAAGTAAATATGAGAGAAATAGGAGAAGAGAACGGCGGATCGGTCCACCACCATGTCGATTTCTCGGAGTCGTCATCCAATAGCCCCGCTAGTGTTGGCAGTAGAATCTTGGGTGGTAATGGTTCGGGTCCTCTTTTTACTGAGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGTTCTAGTGGTTGTCGATCAGGGAGTGTGACGGAAGAGGAGATAGGAGAAGAAGATGATGACTGCTTTGATGATTGGGAGGCTATTGCCGATTCCCTAGCCGCCAGTGAGAAGCAACAGGATCAATGTTCTGAATCTTCCACTAGGGGTAATGTTGTTCCCCAATTGGGTTCTTGCGGAGATAGTAGAAATGAGTTGGGTGTAGGAGATGGTGACTCAAGTATTGAACGTGGGGGAATTGTGCGGAGCGCTTCAATGAATTGCCGAGCATGGAGGCCTGATGATACCTTTCGTCCTCAGAGTTTGCCCATGCTGTCGAAGCAGCTTAGTTTACCGAATACAGACCGGCGTTTTGGATGTGAAGGCATCTCTTGGTCCTGTGGTGGTGTTATGCCTGCGCCTACATCTTGTCCAATTTGCTTTGAAGATTTGGACCTTACAGACTCAAGCTTTTTACCTTGTTTCTGTGGATTCCGGCTTTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGAACATGGTCCTTCCGACAATGAGACAAATGTACATGGTGGCAGCCCAACATTCCCAATGGCTCGTTCTTGTAGCACGATTTCAAGGTCTTAGGTAGTGGTCAGTTTCTGTGGTTTATGTCCGTTTTTTGTTCCTGCATCTCTTTGGGTATTTGAGTGTTGAAGTATGTTTATGAGACTGAGAACCTTTAACTGATCTGCTTCGTACATGAGTGTGGCTCTTAAATTGGGGTTCACCTGCCAATGTAGAGGACTTATTTCGGACTTGATATGTGAATACTGAATAGACAAGGTGGTATAGAAATTAATACATGGAATAATGATACAACAATTGTTACTATTATCTTATTTTGTGCTTGCATATATATCATATGAATGCTGAACTGTTCAATTTAATACTTTCCTCTTTAGTCTTACTATTTTTATGAGATATAGTGTCATGATTGACTTCTTACGTGCGGTTTTATAGAATATGAGTCTCAGAAGTATATACACTAGAGAATAGAGATGTGGAAATATTTGTAATAACTTGTATGTTACACAACTAATTGTTCAGTGCTTTCGTTCATAGCCAGC

Coding sequence (CDS)

ATGGTTACTGATTCAATCACCAATGCTTCAATTTCTTTGGCTCCTAACGCTCGGGATTTGCCCTTGCCCAAGAAGAACAGGGTTAGGTATTCCAAATTGAAGCAGTCGAAGCTTGATGTTCGTCGGGAACAATGGCTTTCTCGAGGTGCTGTAAGGAACAAAAAATGGAATGAAGAAGACAACCGAGTTGACTCAGTGGTCGTCGAAACGAGGGAAGATGATAATCTTTCCTCTAAGAAAGTAAATATGAGAGAAATAGGAGAAGAGAACGGCGGATCGGTCCACCACCATGTCGATTTCTCGGAGTCGTCATCCAATAGCCCCGCTAGTGTTGGCAGTAGAATCTTGGGTGGTAATGGTTCGGGTCCTCTTTTTACTGAGAGTAGCAGTAGTAGTAGCTGCCGTAGCAGTTCTAGTGGTTGTCGATCAGGGAGTGTGACGGAAGAGGAGATAGGAGAAGAAGATGATGACTGCTTTGATGATTGGGAGGCTATTGCCGATTCCCTAGCCGCCAGTGAGAAGCAACAGGATCAATGTTCTGAATCTTCCACTAGGGGTAATGTTGTTCCCCAATTGGGTTCTTGCGGAGATAGTAGAAATGAGTTGGGTGTAGGAGATGGTGACTCAAGTATTGAACGTGGGGGAATTGTGCGGAGCGCTTCAATGAATTGCCGAGCATGGAGGCCTGATGATACCTTTCGTCCTCAGAGTTTGCCCATGCTGTCGAAGCAGCTTAGTTTACCGAATACAGACCGGCGTTTTGGATGTGAAGGCATCTCTTGGTCCTGTGGTGGTGTTATGCCTGCGCCTACATCTTGTCCAATTTGCTTTGAAGATTTGGACCTTACAGACTCAAGCTTTTTACCTTGTTTCTGTGGATTCCGGCTTTGCCTTTTCTGTCACAAGAGGATTCTTGAAGAGGATGGGCGCTGTCCTGGTTGCAGGAAGCCATATGAACATGGTCCTTCCGACAATGAGACAAATGTACATGGTGGCAGCCCAACATTCCCAATGGCTCGTTCTTGTAGCACGATTTCAAGGTCTTAG

Protein sequence

MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEEDNRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNGSGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEEDDDCFDDWEAIADSLAASEKQQDQCSESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLPMLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS

Homology

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BLAST of Sed0003261 vs. NCBI nr
Match: XP_008453149.1 (PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo])

HSP 1 Score: 586.3 bits (1510), Expect = 1.8e-163
Identity = 291/349 (83.38%), Postives = 316/349 (90.54%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS ISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0003261 vs. NCBI nr
Match: XP_004138290.2 (uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetical protein Csa_013954 [Cucumis sativus])

HSP 1 Score: 585.5 bits (1508), Expect = 3.0e-163
Identity = 291/349 (83.38%), Postives = 315/349 (90.26%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DD+LSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDDLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNV+ QL SCGD RNELGVGDGDSS+ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVISQLDSCGDRRNELGVGDGDSSVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLP TDRRFGC G+SW+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPTTDRRFGCGGVSWACGGVIPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           CHKRILEEDGRCPGCRKPY+  P+DNETNV  GSPT P+ARSCS ISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNVLAGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0003261 vs. NCBI nr
Match: KAA0057903.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 585.1 bits (1507), Expect = 4.0e-163
Identity = 290/348 (83.33%), Postives = 315/348 (90.52%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISR 348
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS ISR
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISR 348

[Close]

BLAST of Sed0003261 vs. NCBI nr
Match: TYJ98591.1 (suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 582.8 bits (1501), Expect = 2.0e-162
Identity = 289/347 (83.29%), Postives = 314/347 (90.49%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTIS 347
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS IS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMIS 347

[Close]

BLAST of Sed0003261 vs. NCBI nr
Match: XP_038878939.1 (uncharacterized protein LOC120071026 [Benincasa hispida])

HSP 1 Score: 582.0 bits (1499), Expect = 3.4e-162
Identity = 292/350 (83.43%), Postives = 314/350 (89.71%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RV+ SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TREDDNLSSKK+NMR+IGEEN  SVH H DFS+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTREDDNLSSKKINMRDIGEENDRSVHRHSDFSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQHDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGDSRNELGVGDGDS ++RG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDSRNELGVGDGDSGVDRGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGC-EGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           MLSKQLSLPNTDRRFGC  GI W CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCL
Sbjct: 241 MLSKQLSLPNTDRRFGCGGGIPWGCGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           FCHKRI+EEDGRCPGCRKPY+  P+D+ETNV GGSP F +ARSCS ISRS
Sbjct: 301 FCHKRIIEEDGRCPGCRKPYDRDPADSETNVQGGSPMFALARSCSMISRS 350

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BLAST of Sed0003261 vs. ExPASy Swiss-Prot
Match: O95628 (CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-11
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 270 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHGPS 324
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY   P+
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of Sed0003261 vs. ExPASy Swiss-Prot
Match: Q8BT14 (CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-11
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 270 PTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRI-LEEDGRCPGCRKPYEHGPS 324
           P  CP+C E L++ D +F PC CG+++C FC  RI  +E+G CP CRKPY   P+
Sbjct: 11  PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

[Close]

BLAST of Sed0003261 vs. ExPASy Swiss-Prot
Match: P34909 (General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MOT2 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 273 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL---EEDGRCPGCRKPYE 320
           CP+C E +D+TD +F PC CG+++C FC+  I    E +GRCP CR+ Y+
Sbjct: 33  CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNPELNGRCPACRRKYD 82

[Close]

BLAST of Sed0003261 vs. ExPASy Swiss-Prot
Match: Q09818 (Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 273 CPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEE-DGRCPGCRKPY 319
           CP+C E++D++D +F PC CG+R+C FC   I E+ +GRCP CR+ Y
Sbjct: 18  CPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRRLY 64

[Close]

BLAST of Sed0003261 vs. ExPASy TrEMBL
Match: A0A1S3BVJ1 (uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=4 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 8.6e-164
Identity = 291/349 (83.38%), Postives = 316/349 (90.54%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS ISRS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISRS 349

[Close]

BLAST of Sed0003261 vs. ExPASy TrEMBL
Match: A0A5A7UPV5 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002030 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.9e-163
Identity = 290/348 (83.33%), Postives = 315/348 (90.52%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISR 348
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS ISR
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMISR 348

[Close]

BLAST of Sed0003261 vs. ExPASy TrEMBL
Match: A0A5D3BIS7 (Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002110 PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 9.6e-163
Identity = 289/347 (83.29%), Postives = 314/347 (90.49%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPLPKK RVR SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLPKKKRVRNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++TR+DDNLSS+K+NMREIGEEN  SVHHH D+S+S SNSP S+GS ILGGN 
Sbjct: 61  NRLDSVVIKTRKDDNLSSEKINMREIGEENDRSVHHHSDYSDSPSNSPPSLGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEE-DDDCFDDWEAIADSLAASEKQQDQC 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEEE  EE DDDC DDWEAIAD+LAA++KQ+DQC
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEEEEEEEGDDDCLDDWEAIADALAATDKQRDQC 180

Query: 181 SESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLP 240
           SESS RGNVV QL SCGD RNELGVGDGDS++ERG IV+ ASMNCRAWRPDD FRPQSLP
Sbjct: 181 SESSPRGNVVSQLDSCGDRRNELGVGDGDSNVERGRIVQRASMNCRAWRPDDAFRPQSLP 240

Query: 241 MLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300
            LSKQLSLPNTDRRFGC G+ W+CGGV+P PTSCPICFEDLDLTDSSFLPCFCGFRLCLF
Sbjct: 241 TLSKQLSLPNTDRRFGCGGVPWACGGVLPVPTSCPICFEDLDLTDSSFLPCFCGFRLCLF 300

Query: 301 CHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTIS 347
           CHKRILEEDGRCPGCRKPY+  P+DNETN+  GSPT P+ARSCS IS
Sbjct: 301 CHKRILEEDGRCPGCRKPYDRDPADNETNILVGSPTLPLARSCSMIS 347

[Close]

BLAST of Sed0003261 vs. ExPASy TrEMBL
Match: A0A6J1C357 (uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007016 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 5.4e-158
Identity = 285/348 (81.90%), Postives = 308/348 (88.51%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSITNASISLAP+ARDLPLPKK RV+ SKLKQSKLDVRREQWLSRGAV+NKKWNEED
Sbjct: 1   MVTDSITNASISLAPSARDLPLPKKKRVKNSKLKQSKLDVRREQWLSRGAVKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DSVV++T +DDNLSSKK+NMREIG +NGGSVHH  DFSES SNSP S+ S ILGGN 
Sbjct: 61  NRLDSVVIKTSKDDNLSSKKINMREIGGDNGGSVHHDSDFSESPSNSPPSLASSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEEDDDCFDDWEAIADSLAASEKQQDQCS 180
           SGP FT SSSSSSCRSSSSGCRSGS+TEE   E DDD  DDWEAIAD+LAA++KQ DQCS
Sbjct: 121 SGPHFTGSSSSSSCRSSSSGCRSGSITEE---EGDDDGLDDWEAIADALAATDKQHDQCS 180

Query: 181 ESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLPM 240
           ESS RG+ V QL SCGDSRNELGVGDGDS +E G I + A M+CRAWRPDD FRPQSLP 
Sbjct: 181 ESSPRGDAVSQLDSCGDSRNELGVGDGDSKLECGRIAQRAPMSCRAWRPDDAFRPQSLPT 240

Query: 241 LSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLFC 300
           LSKQLSLPNTDRR+GC GI W+CGGVM  PTSCPICFEDLDLTDSSFLPCFCGFRLCLFC
Sbjct: 241 LSKQLSLPNTDRRYGCGGIPWACGGVMSVPTSCPICFEDLDLTDSSFLPCFCGFRLCLFC 300

Query: 301 HKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           HKRILEEDGRCPGCRKPYE  P+D+ETNVHGGSPT P+ARSCS ISRS
Sbjct: 301 HKRILEEDGRCPGCRKPYECDPADSETNVHGGSPTLPLARSCSMISRS 345

[Close]

BLAST of Sed0003261 vs. ExPASy TrEMBL
Match: A0A6J1JM47 (uncharacterized protein LOC111485637 OS=Cucurbita maxima OX=3661 GN=LOC111485637 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 1.0e-156
Identity = 283/348 (81.32%), Postives = 303/348 (87.07%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           MVTDSI NASISLAPNARDLPL KK R R SKLKQSKLDVRREQWLSRGA++NKKWNEED
Sbjct: 1   MVTDSIANASISLAPNARDLPLSKKRRARNSKLKQSKLDVRREQWLSRGAIKNKKWNEED 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           NR+DS VV+T EDDNLSSKK+N REIGEE+  SVHHH D SES SNSP S+GS ILGGN 
Sbjct: 61  NRLDSEVVKTVEDDNLSSKKINRREIGEEDDRSVHHHSDCSESPSNSPPSMGSSILGGND 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEEDDDCFDDWEAIADSLAASEKQQDQCS 180
           SG  FT SSSSSSCRSSSSGCRSGS+TEEE  EEDDDC +DWEA AD+L A++KQ DQCS
Sbjct: 121 SGHHFTGSSSSSSCRSSSSGCRSGSITEEEEDEEDDDCLEDWEAFADTLIATDKQHDQCS 180

Query: 181 ESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSLPM 240
           ESS RG+VV QLGSCGDSRNELGVGDGDSSIE G I R ASMN RAWRPDD  RPQSLP 
Sbjct: 181 ESSPRGDVVSQLGSCGDSRNELGVGDGDSSIEHGRIARRASMNGRAWRPDDADRPQSLPT 240

Query: 241 LSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCLFC 300
           LSKQLSLPNTDRRFGC  + W+CGGV+P PTSCPICFEDLDLTDS+FLPC CGFRLCLFC
Sbjct: 241 LSKQLSLPNTDRRFGCGSVPWACGGVVPVPTSCPICFEDLDLTDSNFLPCPCGFRLCLFC 300

Query: 301 HKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           HKRILEEDGRCPGCRKPY+  P+DNETN H GSPTFP+ARSCS ISRS
Sbjct: 301 HKRILEEDGRCPGCRKPYDRDPADNETNEHSGSPTFPLARSCSMISRS 348

[Close]

BLAST of Sed0003261 vs. TAIR 10
Match: AT5G62910.1 (RING/U-box superfamily protein )

HSP 1 Score: 238.8 bits (608), Expect = 6.5e-63
Identity = 165/354 (46.61%), Postives = 208/354 (58.76%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           M+TDSITNAS + AP  RD    K+N  + +K+KQ+KL +RREQWLS+ AV NK+  EE 
Sbjct: 1   MITDSITNASATSAP--RDSGKKKRNN-KSAKMKQNKLGLRREQWLSQVAVSNKEVKEER 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
           +     V  +++  + SS KV  RE     G ++ HH  F ES SNS        +GG  
Sbjct: 61  S-----VNRSQKPHHESSDKVR-REEDNNGGNNLLHHESFMESPSNSS-------VGGTY 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEE-IGEEDDDCFDDWEAIADSLAASEK----- 180
           S   F+  SS SS  SSSSG  SG++TEEE + ++DD C DDWEA+AD+LAA E+     
Sbjct: 121 SSTNFSGRSSRSS--SSSSGFCSGNITEEENVDDDDDGCVDDWEAVADALAAEEEIEKKS 180

Query: 181 -----QQDQCSESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRP 240
                 ++Q S   +  NV     S  D+ + +GV D      R    +  S   RAWR 
Sbjct: 181 RPLESVKEQVSVGQSASNVCD--SSISDASDVVGVEDPKQECLRVSSRKQTSN--RAWRL 240

Query: 241 DDTFRPQSLPMLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLP 300
           DD  RPQ LP L+KQLS P  D+RF    I          P+SCPIC+EDLDLTDS+FLP
Sbjct: 241 DDDLRPQGLPNLAKQLSFPELDKRFSSVAI----------PSSCPICYEDLDLTDSNFLP 300

Query: 301 CFCGFRLCLFCHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCS 344
           C CGFRLCLFCHK I + DGRCPGCRKPYE      ET++ GG  T  +ARS S
Sbjct: 301 CPCGFRLCLFCHKTICDGDGRCPGCRKPYERNMVKAETSIQGGGLTIRLARSSS 322

[Close]

BLAST of Sed0003261 vs. TAIR 10
Match: AT3G48070.1 (RING/U-box superfamily protein )

HSP 1 Score: 233.0 bits (593), Expect = 3.6e-61
Identity = 160/350 (45.71%), Postives = 194/350 (55.43%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           M++DSITNAS + AP ARD    KK   R +KLKQSKL +RREQWLS+ A+ NK   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEM 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
                +  E  +  +L     N+    +E+    H H  F ES SNSP S    IL G  
Sbjct: 61  ESNRRIGSEKPDQRDLPRPVENL----DEDNNGTHRHESFIESLSNSPNS----ILSGMN 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEEDDDCFDDWEAIADSLAASEK--QQDQ 180
           S P F+ SSS     S S G  SG++TEEE   +DD C DDWEAIAD+LAA ++  +++ 
Sbjct: 121 SIPNFSSSSS-----SGSGGSCSGNITEEE-DADDDGCLDDWEAIADALAADDEKHEKEN 180

Query: 181 CSESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSL 240
             ES      + Q    G +   L     DS        R    + +AWRPDD  RPQ L
Sbjct: 181 PPESCQEHEDIKQSALIGGADVVLRDAKADSQ-------RRKQKSNQAWRPDDKLRPQGL 240

Query: 241 PMLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           P L KQ S P  +  F           V   P+SCPIC+EDLDLTDS+FLPC CGFRLCL
Sbjct: 241 PNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLPCPCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISRS 349
           FCHK I + DGRCPGCRKPYE      E +V GG  T  +ARS S   RS
Sbjct: 301 FCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCRS 319

[Close]

BLAST of Sed0003261 vs. TAIR 10
Match: AT3G48070.2 (RING/U-box superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 8.0e-61
Identity = 159/349 (45.56%), Postives = 193/349 (55.30%), Query Frame = 0


Query: 1   MVTDSITNASISLAPNARDLPLPKKNRVRYSKLKQSKLDVRREQWLSRGAVRNKKWNEED 60
           M++DSITNAS + AP ARD    KK   R +KLKQSKL +RREQWLS+ A+ NK   EE 
Sbjct: 1   MISDSITNASATSAPTARDFG-KKKRTNRSAKLKQSKLGLRREQWLSQVAMINKGDKEEM 60

Query: 61  NRVDSVVVETREDDNLSSKKVNMREIGEENGGSVHHHVDFSESSSNSPASVGSRILGGNG 120
                +  E  +  +L     N+    +E+    H H  F ES SNSP S    IL G  
Sbjct: 61  ESNRRIGSEKPDQRDLPRPVENL----DEDNNGTHRHESFIESLSNSPNS----ILSGMN 120

Query: 121 SGPLFTESSSSSSCRSSSSGCRSGSVTEEEIGEEDDDCFDDWEAIADSLAASEK--QQDQ 180
           S P F+ SSS     S S G  SG++TEEE   +DD C DDWEAIAD+LAA ++  +++ 
Sbjct: 121 SIPNFSSSSS-----SGSGGSCSGNITEEE-DADDDGCLDDWEAIADALAADDEKHEKEN 180

Query: 181 CSESSTRGNVVPQLGSCGDSRNELGVGDGDSSIERGGIVRSASMNCRAWRPDDTFRPQSL 240
             ES      + Q    G +   L     DS        R    + +AWRPDD  RPQ L
Sbjct: 181 PPESCQEHEDIKQSALIGGADVVLRDAKADSQ-------RRKQKSNQAWRPDDKLRPQGL 240

Query: 241 PMLSKQLSLPNTDRRFGCEGISWSCGGVMPAPTSCPICFEDLDLTDSSFLPCFCGFRLCL 300
           P L KQ S P  +  F           V   P+SCPIC+EDLDLTDS+FLPC CGFRLCL
Sbjct: 241 PNLEKQRSFPVMNLHF---------SSVTVVPSSCPICYEDLDLTDSNFLPCPCGFRLCL 300

Query: 301 FCHKRILEEDGRCPGCRKPYEHGPSDNETNVHGGSPTFPMARSCSTISR 348
           FCHK I + DGRCPGCRKPYE      E +V GG  T  +ARS S   R
Sbjct: 301 FCHKTICDGDGRCPGCRKPYERNTIKFEASVQGGGLTIRLARSSSMFCR 318

[Close]

BLAST of Sed0003261 vs. TAIR 10
Match: AT1G74870.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-16
Identity = 78/291 (26.80%), Postives = 123/291 (42.27%), Query Frame = 0


Query: 30  YSKLKQSKLDVRREQWLSRGAVRNKKWNEEDNRVDSVVVETREDDNLSSKKVNMREIGEE 89
           + KLKQ K+D RR+QW+S+    N    E   R+ S++      + L+ +K    +  ++
Sbjct: 28  FCKLKQWKIDARRKQWISQWKKANVDEEEIGRRLRSLL------EKLTDQKAWRIDYDDD 87

Query: 90  NGGSVHHHVDFSESSSNSPASVGSRILGGNGSGPLFTESSSSSSCRSSSSGCRSGSVTEE 149
               +   ++ + S ++SP SV  R            + S S  C      C S  +TEE
Sbjct: 88  EDDEI--DLERTSSFASSPTSVLKR------------KDSVSGDC-----FCCSKQMTEE 147

Query: 150 EIGEEDDDCFDDWEAIADSLAASEKQQDQCSESSTRGNVVPQLGSCGDSRNELGVGDGDS 209
           E  E  DD +D+W+   D+L + E   ++ S   T                       D 
Sbjct: 148 E-EEVFDDAYDNWDGFKDALNSFENDNNESSRLVTE----------------------DF 207

Query: 210 SIERGGIVRSASMNCRAWRPDDTFRPQ-SLPMLSKQLSLPNTDRRFGCEGISWSCGGVMP 269
             E   ++   S      + +     Q ++   S +    N++++ G             
Sbjct: 208 EQEEEDLIPDTSQRMNKCKQEAAPGNQTTIHRNSNKKKRSNSEKQRG------------D 258

Query: 270 APTSCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRILEEDGRCPGCRKPYE 320
               CPIC E +D TD  F PC CGFR+CLFCH +I E + RCP CRK Y+
Sbjct: 268 GDEECPICSELMDATDLEFEPCTCGFRICLFCHNKISENEARCPACRKDYK 258

[Close]

BLAST of Sed0003261 vs. TAIR 10
Match: AT3G45630.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-10
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 272 SCPICFEDLDLTDSSFLPCFCGFRLCLFCHKRIL------EEDGRCPGCRKPYE 320
           +CP+C E++DLTD    PC CG+++C++C   I+      + +GRCP CR PY+
Sbjct: 8   TCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHIMDMAEKDQSEGRCPACRTPYD 61

The following BLAST results are available for this feature:

BLAST of Sed0003261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453149.1	1.8e-163	83.38	PREDICTED: uncharacterized protein LOC103493947 [Cucumis melo]	[more]
XP_004138290.2	3.0e-163	83.38	uncharacterized protein LOC101211244 [Cucumis sativus] >KAE8652409.1 hypothetica...	[more]
KAA0057903.1	4.0e-163	83.33	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98591.1	2.0e-162	83.29	suppressor protein SRP40 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_038878939.1	3.4e-162	83.43	uncharacterized protein LOC120071026 [Benincasa hispida]	[more]

BLAST of Sed0003261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O95628	2.5e-11	49.09	CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 S...	[more]
Q8BT14	2.5e-11	49.09	CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 ...	[more]
P34909	1.1e-09	48.00	General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisia...	[more]
Q09818	1.4e-09	51.06	Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharo...	[more]

BLAST of Sed0003261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVJ1	8.6e-164	83.38	uncharacterized protein LOC103493947 OS=Cucumis melo OX=3656 GN=LOC103493947 PE=...	[more]
A0A5A7UPV5	1.9e-163	83.33	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3BIS7	9.6e-163	83.29	Suppressor protein SRP40 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1C357	5.4e-158	81.90	uncharacterized protein LOC111007016 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1JM47	1.0e-156	81.32	uncharacterized protein LOC111485637 OS=Cucurbita maxima OX=3661 GN=LOC111485637...	[more]

BLAST of Sed0003261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62910.1	6.5e-63	46.61	RING/U-box superfamily protein	[more]
AT3G48070.1	3.6e-61	45.71	RING/U-box superfamily protein	[more]
AT3G48070.2	8.0e-61	45.56	RING/U-box superfamily protein	[more]
AT1G74870.1	1.2e-16	26.80	RING/U-box superfamily protein	[more]
AT3G45630.1	1.7e-10	42.59	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 186..247 e-value: 2.4E-17 score: 64.0
None	No IPR available	PFAM	PF14570	zf-RING_4	coord: 191..237 e-value: 1.8E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	PANTHER	PTHR12603:SF7	RING/U-BOX SUPERFAMILY PROTEIN	coord: 2..263
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 187..240
IPR039780	CCR4-NOT transcription complex subunit 4	PANTHER	PTHR12603	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	coord: 2..263
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 191..233 score: 9.169853
IPR039515	NOT4, modified RING finger, HC subclass (C4C4-type)	CDD	cd16618	mRING-HC-C4C4_CNOT4	coord: 191..234 e-value: 6.38737E-17 score: 70.7212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003261.1	Sed0003261.1	mRNA
Sed0003261.2	Sed0003261.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0004842	ubiquitin-protein transferase activity