Sed0003235 (gene) Chayote v1

Overview


Name	Sed0003235
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Xyloglucan endotransglucosylase/hydrolase protein 9
Location	LG01: 5138652 .. 5139132 (-)
RNA-Seq Expression	Sed0003235
Synteny	Sed0003235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAATCAAATTCAGATACATATTAGAGGGCATTTCATGTTTGTATGATAAAAGTTAGTTTCACAAATATTAGTATGGCTATGGTCCGACTTGGTTTGCTGTGTCTAATTCTTGCTGGAAATTTGTTGTTTCAACTCACGGCCGCGAGTGCGGCCTACGCGCCGCAGGTTGCCACTGCGACGCGGTTTCATGAGGCTGAAATTGGAAAGGAAGTGGAGAATCAGGCGGCGGCCGGTCCTGAAATCAGACGGCTGGGAAAGCATCATTTTCAAACCTCCATCGCCGGCGGCGGGGTGCTCATCGGCGGCCTTGCTACGGCTGCTTTTGCTGTTGTGTTTTGTTATATAAGAGTCACCACAAAACCAAACCAAACTAATTAACCCTTTTTTTCTCCTTTTAAACAAACTTTATGCACTCTTTTTGTTTTTCTCCCACGTTTTTGGAATATTGATTCTTAGTTGTAAAAGCC

mRNA sequence

AAAAAAAAAAAAAAAAATCAAATTCAGATACATATTAGAGGGCATTTCATGTTTGTATGATAAAAGTTAGTTTCACAAATATTAGTATGGCTATGGTCCGACTTGGTTTGCTGTGTCTAATTCTTGCTGGAAATTTGTTGTTTCAACTCACGGCCGCGAGTGCGGCCTACGCGCCGCAGGTTGCCACTGCGACGCGGTTTCATGAGGCTGAAATTGGAAAGGAAGTGGAGAATCAGGCGGCGGCCGGTCCTGAAATCAGACGGCTGGGAAAGCATCATTTTCAAACCTCCATCGCCGGCGGCGGGGTGCTCATCGGCGGCCTTGCTACGGCTGCTTTTGCTGTTGTGTTTTGTTATATAAGAGTCACCACAAAACCAAACCAAACTAATTAACCCTTTTTTTCTCCTTTTAAACAAACTTTATGCACTCTTTTTGTTTTTCTCCCACGTTTTTGGAATATTGATTCTTAGTTGTAAAAGCC

Coding sequence (CDS)

ATGATAAAAGTTAGTTTCACAAATATTAGTATGGCTATGGTCCGACTTGGTTTGCTGTGTCTAATTCTTGCTGGAAATTTGTTGTTTCAACTCACGGCCGCGAGTGCGGCCTACGCGCCGCAGGTTGCCACTGCGACGCGGTTTCATGAGGCTGAAATTGGAAAGGAAGTGGAGAATCAGGCGGCGGCCGGTCCTGAAATCAGACGGCTGGGAAAGCATCATTTTCAAACCTCCATCGCCGGCGGCGGGGTGCTCATCGGCGGCCTTGCTACGGCTGCTTTTGCTGTTGTGTTTTGTTATATAAGAGTCACCACAAAACCAAACCAAACTAATTAA

Protein sequence

MIKVSFTNISMAMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVENQAAAGPEIRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTKPNQTN

Homology

[Close]

BLAST of Sed0003235 vs. NCBI nr
Match: XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 9.5e-26
Identity = 74/107 (69.16%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 6   FTNISMAMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIG--KEVENQ--A 65
           +++ +MA+VR GLLCL+L G  L QLTAAS A AP VATA  F  AEIG   E+ENQ   
Sbjct: 9   WSSTNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQGV 68

Query: 66  AAGPEIRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTKPN 109
           AAGPEIRRLGKHH  TS+AGGGVL+GGLATA FAVVFCYIRVT KP+
Sbjct: 69  AAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKPD 115

[Close]

BLAST of Sed0003235 vs. NCBI nr
Match: KAG7034949.1 (hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.0 bits (310), Expect = 8.0e-25
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 7   TNISMAMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEV--ENQ--AA 66
           T ++MA+VR GLLCL+L G  L QLTAAS A AP VATA  F   EIGKEV  ENQ   A
Sbjct: 42  TQLNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFF-GEIGKEVEMENQPGVA 101

Query: 67  AGPEIRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           AGPEIRRLGKHH  TS+AGGGVL+GGLATA FAVVFCYIRVT K
Sbjct: 102 AGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRK 144

[Close]

BLAST of Sed0003235 vs. NCBI nr
Match: XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothetical protein SDJN03_02152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.8e-24
Identity = 74/100 (74.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 11  MAMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEV--ENQ--AAAGPE 70
           MA+VR GLLCL+L G  L QLTAAS A AP VATA  F   EIGKEV  ENQ   AAGPE
Sbjct: 1   MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFF-GEIGKEVEMENQPGVAAGPE 60

Query: 71  IRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           IRRLGKHH  TS+AGGGVL+GGLATA FAVVFCYIRVT K
Sbjct: 61  IRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRK 99

[Close]

BLAST of Sed0003235 vs. NCBI nr
Match: KGN46704.1 (hypothetical protein Csa_020980 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 12  AMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVENQ---AAAGPEIR 71
           A+VRL L+ LILAG    QLTAA+   AP V TA  F  ++IGKE   Q    A GP IR
Sbjct: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPAIR 62

Query: 72  RLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTKPNQTN 112
           RLGKHHF TS+AGG VLIG LATA FA+VFCYIRVT KPN  N
Sbjct: 63  RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of Sed0003235 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 13  MVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVENQAAAG----PEIR 72
           M ++ LLCLILA  LL Q  A++A       T +    A    E +N    G    PEIR
Sbjct: 1   MAKISLLCLILAQILLIQAMASTA-----TTTTSHVSAAPEPSETDNVEGPGLAEAPEIR 60

Query: 73  RLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           RLGKHH   S+AGGGV+IGGL TA FA VFCYIRVT K
Sbjct: 61  RLGKHHVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRK 93

[Close]

BLAST of Sed0003235 vs. ExPASy TrEMBL
Match: A0A6J1G7L7 (uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC111451632 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.3e-24
Identity = 74/100 (74.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 11  MAMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEV--ENQ--AAAGPE 70
           MA+VR GLLCL+L G  L QLTAAS A AP VATA  F   EIGKEV  ENQ   AAGPE
Sbjct: 1   MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFF-GEIGKEVEMENQPGVAAGPE 60

Query: 71  IRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           IRRLGKHH  TS+AGGGVL+GGLATA FAVVFCYIRVT K
Sbjct: 61  IRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRK 99

[Close]

BLAST of Sed0003235 vs. ExPASy TrEMBL
Match: A0A0A0KCY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 65/103 (63.11%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 12  AMVRLGLLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVENQ---AAAGPEIR 71
           A+VRL L+ LILAG    QLTAA+   AP V TA  F  ++IGKE   Q    A GP IR
Sbjct: 3   AVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPAIR 62

Query: 72  RLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTKPNQTN 112
           RLGKHHF TS+AGG VLIG LATA FA+VFCYIRVT KPN  N
Sbjct: 63  RLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of Sed0003235 vs. ExPASy TrEMBL
Match: A0A067KB75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-12
Identity = 53/98 (54.08%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 11  MAMVRLGLLCLILAGNLLFQLTA-ASAAYAPQVATATRFHEAEIGKEVENQAAAGPEIRR 70
           MA +RL + CLILAG L+ Q TA  S   +P VA      +  +    E + A  PEIRR
Sbjct: 1   MARLRLVISCLILAGILIVQATADESEKKSPSVA------DQPVASSHEWEEAEAPEIRR 60

Query: 71  LGKHH-FQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           LGKHH    S+AGGGV+IGGL TA FA VFCYIRVT K
Sbjct: 61  LGKHHSSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRK 92

[Close]

BLAST of Sed0003235 vs. ExPASy TrEMBL
Match: W9R8T9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 57/111 (51.35%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 13  MVRLGLLCLILAGNLLFQLTAASAAYAP--QVATATR----------FHEAEIGKEV--- 72
           M R+ LL LIL G L+ Q  AA +   P  QV +  R            E   GKE    
Sbjct: 1   MARIYLLGLILVGILVIQTLAAKSELNPADQVQSGARSRVADQPVSSAEERSEGKEASDD 60

Query: 73  ENQAAAGPEIRRLGKHHFQTSIAGGGVLIGGLATAAFAVVFCYIRVTTKPN 109
           EN+A A P IRRLGKHH   S+AGGGV+IGGL TA FA VFCYIRVT K N
Sbjct: 61  ENEAEA-PAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYIRVTRKRN 110

[Close]

BLAST of Sed0003235 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 44/89 (49.44%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 18  LLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVENQAAAGPEIRRLGKHHFQT 77
           L CLI+    L Q    S A   ++  +     +E G    ++ A  PEIRRLGKHH   
Sbjct: 7   LFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDK 66

Query: 78  SIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
           S+AGGGV+IGGL TA FA VFCYIRVT K
Sbjct: 67  SMAGGGVIIGGLVTAVFAAVFCYIRVTRK 95

[Close]

BLAST of Sed0003235 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 8.0e-07
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 18  LLCLILAGNLLFQLTAASAAYAPQVATATRFHEAEIGKEVE-NQAAAGPEIRRLGKHH-- 77
           +LC +L    +F + AAS+   P        HE   G+E E  + +   E  R G HH  
Sbjct: 7   VLCFLL--TYVFSMAAASSEAEPPATRKLGRHEWP-GEEAEAPEVSHLEETVRRGHHHST 66

Query: 78  FQTSIAGGGVLIGGLATAAFAVVFCYIRVTTK 107
            + S+AGGGV++GGLAT    VVFCYIR T K
Sbjct: 67  VERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Sed0003235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532519.1	9.5e-26	69.16	uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]	[more]
KAG7034949.1	8.0e-25	72.12	hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022947872.1	6.8e-24	74.00	uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothet...	[more]
KGN46704.1	2.7e-20	63.11	hypothetical protein Csa_020980 [Cucumis sativus]	[more]
KAG6572323.1	3.5e-12	52.04	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0003235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7L7	3.3e-24	74.00	uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A0A0KCY0	1.3e-20	63.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1	[more]
A0A067KB75	8.4e-12	54.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1	[more]
W9R8T9	2.4e-11	51.35	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008734 PE=4 SV=1	[more]
A0A0A0K3N0	3.2e-11	49.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]

BLAST of Sed0003235 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	8.0e-07	41.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 9..109
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 9..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003235.1	Sed0003235.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane