Sed0003172 (gene) Chayote v1

Overview


Name	Sed0003172
Type	gene
Organism	Sechium edule (Chayote v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	LG11: 19363311 .. 19363989 (+)
RNA-Seq Expression	Sed0003172
Synteny	Sed0003172

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCATCGAGTTTCCCTTACTTGATCGAACAACCCAAACTTCAGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCTAGTTTATGGCCGCTTCTCTATGGTACGAGTTGTTGCTTCATTGAATTCGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGATCAGTACCAAGATCTAGTCCTAGACAGTGCAGACTTAATTTTAACAATGGGGACGGTAACAATGAAAATGGCTCCTTCTTTAGTAAGATTATATGAGCAAATGCCCGAACCAAAATATGTTATTGCTATGGGAGCTGTACAATTACGGGAGGGATGTTGAAGATCGATTCTTATAGTATTGTTCGGGAGTCGATAAGTTAATTCTGTCGATGTGTATTTGCCAGGTGTCCACCTAAACCCGAGGTCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGGTGTTTTACTACCAACCATAAATTTCATGTTGGCCCAAGTACTCATCTTTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCCGAAACTTTTTCAAATACAAAAGTTCAAGATCTTCCTACGAATTAGTGAAGTAG

mRNA sequence

ATGAATTCCATCGAGTTTCCCTTACTTGATCGAACAACCCAAACTTCAGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCTAGTTTATGGCCGCTTCTCTATGGTACGAGTTGTTGCTTCATTGAATTCGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGATCAGTACCAAGATCTAGTCCTAGACAGTGCAGACTTAATTTTAACAATGGGGACGCAAATGCCCGAACCAAAATATGTTATTGCTATGGGAGCTGTACAATTACGGGAGGGATGTTGAAGATCGATTCTTATAGTATTGTTCGGGAGTCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGGTGTTTTACTACCAACCATAAATTTCATGTTGGCCCAAGTACTCATCTTTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCCGAAACTTTTTCAAATACAAAAGTTCAAGATCTTCCTACGAATTAGTGAAGTAG

Coding sequence (CDS)

ATGAATTCCATCGAGTTTCCCTTACTTGATCGAACAACCCAAACTTCAGTTATTTCAACTACATCAAATGATCTTTCAAATTGGTCAAGACTCTCTAGTTTATGGCCGCTTCTCTATGGTACGAGTTGTTGCTTCATTGAATTCGCTTCATTAATAGGTTCACGATTCGACTTTGATCGTTATGGATCAGTACCAAGATCTAGTCCTAGACAGTGCAGACTTAATTTTAACAATGGGGACGCAAATGCCCGAACCAAAATATGTTATTGCTATGGGAGCTGTACAATTACGGGAGGGATGTTGAAGATCGATTCTTATAGTATTGTTCGGGAGTCTGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGAGAATCGGTGTTTTACTACCAACCATAAATTTCATGTTGGCCCAAGTACTCATCTTTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCCGAAACTTTTTCAAATACAAAAGTTCAAGATCTTCCTACGAATTAGTGAAGTAG

Protein sequence

MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGSVPRSSPRQCRLNFNNGDANARTKICYCYGSCTITGGMLKIDSYSIVRESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELVK

Homology

[Close]

BLAST of Sed0003172 vs. NCBI nr
Match: YP_009430631.1 (NADH dehydrogenase subunit K [Gynostemma cardiospermum] >YP_009439808.1 NADH dehydrogenase subunit K [Gynostemma laxiflorum] >YP_010015143.1 NADH dehydrogenase subunit K [Gynostemma yixingense] >ART65086.1 NADH dehydrogenase subunit K [Gynostemma cardiospermum] >ATG86666.1 NADH dehydrogenase subunit K [Gynostemma laxiflorum] >QOI14268.1 NADH dehydrogenase subunit K [Gynostemma yixingense])

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSYTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. NCBI nr
Match: YP_009945421.1 (NADH-plastoquinone oxidoreductase subunit K [Sechium edule] >QOE55951.1 NADH-plastoquinone oxidoreductase subunit K [Sechium edule])

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-65
Identity = 146/226 (64.60%), Postives = 150/226 (66.37%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELVK 194
           FHVGPSTH       +           P   FFKYKSS SSYELVK
Sbjct: 181 FHVGPSTHTGNYDQGLLYQPSSTSEIIPPETFFKYKSSVSSYELVK 226

[Close]

BLAST of Sed0003172 vs. NCBI nr
Match: YP_009236284.1 (NADH-plastoquinone oxidoreductase subunit K [Gynostemma pentaphyllum] >YP_009440161.1 NADH dehydrogenase subunit K [Gynostemma longipes] >YP_009440248.1 NADH dehydrogenase subunit K [Gynostemma burmanicum (nom. inval.)] >YP_009440335.1 NADH dehydrogenase subunit K [Gynostemma pubescens] >AMF84016.1 NADH-plastoquinone oxidoreductase subunit K [Gynostemma pentaphyllum] >ANI25189.1 NADH dehydrogenase subunit K [Gynostemma pentaphyllum] >ART64999.1 NADH dehydrogenase subunit K [Gynostemma pentaphyllum] >ATG86927.1 NADH dehydrogenase subunit K [Gynostemma longipes] >ATG87014.1 NADH dehydrogenase subunit K [Gynostemma burmanicum (nom. inval.)])

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSSTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. NCBI nr
Match: YP_009439895.1 (NADH dehydrogenase subunit K [Gynostemma caulopterum] >YP_009468865.1 NADH dehydrogenase subunit K [Gynostemma compressum] >ATG86753.1 NADH dehydrogenase subunit K [Gynostemma caulopterum] >AVA29844.1 NADH dehydrogenase subunit K [Gynostemma compressum])

HSP 1 Score: 258.8 bits (660), Expect = 3.6e-65
Identity = 144/225 (64.00%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKK+SREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSSTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. NCBI nr
Match: YP_009447539.1 (NADH dehydrogenase subunit K [Cucurbita moschata] >YP_009505084.1 NADH dehydrogenase subunit K [Cucurbita pepo] >YP_009560839.1 NdhK [Trichosanthes kirilowii] >YP_009751826.1 NADH dehydrogenase subunit K [Indofevillea khasiana] >YP_009752079.1 NADH dehydrogenase subunit K [Dendrosicyos socotranus] >YP_009752247.1 NADH dehydrogenase subunit K [Trichosanthes baviensis] >YP_009752331.1 NADH dehydrogenase subunit K [Bryonia marmorata] >YP_009752416.1 NADH dehydrogenase subunit K [Trichosanthes tricuspidata] >YP_009752585.1 NADH dehydrogenase subunit K [Trichosanthes homophylla] >YP_009753178.1 NADH dehydrogenase subunit K [Trichosanthes truncata] >YP_009753262.1 NADH dehydrogenase subunit K [Nothoalsomitra suberosa] >YP_009753624.1 NADH dehydrogenase subunit K [Trichosanthes wallichiana] >YP_009753709.1 NADH dehydrogenase subunit K [Trichosanthes nervifolia] >YP_009753793.1 NADH dehydrogenase subunit K [Trichosanthes pilosa] >ALO21760.1 NdhK [Cucurbita argyrosperma] >ALO21780.1 NdhK [Cucurbita argyrosperma var. palmeri] >ALO21959.1 NdhK [Cucurbita cordata] >ALO21981.1 NdhK [Cucurbita digitata] >ALO22153.1 NdhK [Cucurbita foetidissima] >ALO22255.1 NdhK [Cucurbita lundelliana] >ALO22473.1 NdhK [Cucurbita okeechobeensis] >ALO22476.1 NdhK [Cucurbita okeechobeensis subsp. martinezii] >ALO22540.1 NdhK [Cucurbita pepo subsp. fraterna] >ALO22668.1 NdhK [Cucurbita pepo subsp. ovifera] >ALO22713.1 NdhK [Cucurbita pepo var. ozarkana] >ALO22759.1 NdhK [Cucurbita pepo subsp. pepo] >ALO22844.1 NdhK [Cucurbita pepo var. texana] >ALO22916.1 NdhK [Cucurbita pedatifolia] >QIT04054.1 NADH dehydrogenase subunit K [Luffa aegyptiaca] >QJD26475.1 NdhK [Trichosanthes kirilowii var. japonica] >QJD26649.1 NdhK [Trichosanthes rosthornii] >QKX48477.1 NADH-plastoquinone oxidoreductase subunit K [Luffa acutangula])

HSP 1 Score: 258.1 bits (658), Expect = 6.2e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYDQGLLYQPSSTSEIIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot
Match: Q4VZH1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhK PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-67
Identity = 144/225 (64.00%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKS+ SSYELV
Sbjct: 181 FHVGPSTHTGNYDQELLYQPSSTSEIIPPETFFKYKSAVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot
Match: Q0ZJ16 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhK PE=3 SV=2)

HSP 1 Score: 245.4 bits (625), Expect = 5.4e-64
Identity = 141/225 (62.67%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQ SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRI+SQ+ENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIRSQQENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVG STH      R+ L       + P   FFKYKSS SS E V
Sbjct: 181 FHVGRSTHTGNYDQRL-LYQSPSTSEIPLETFFKYKSSVSSPEFV 224

[Close]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot
Match: Q68S02 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Panax ginseng OX=4054 GN=ndhK PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 141/225 (62.67%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQ SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTI+GGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQ ENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQRENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           F VG S H      R  L    +  + PS  FFKYKSS SS+ELV
Sbjct: 181 FQVGRSIHTGNY-DRGFLYQPPFTSEIPSETFFKYKSSVSSHELV 224

[Close]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot
Match: Q0G9L5 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=ndhK PE=3 SV=2)

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-62
Identity = 139/225 (61.78%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQ SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKK+SREI EDRI SQ+ENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREISEDRIGSQQENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVG STH       + L       +  S  FFKYKSS SS+ELV
Sbjct: 181 FHVGRSTHTGNYDQGL-LYQSPSTSEISSETFFKYKSSVSSHELV 224

[Close]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot
Match: Q06GZ3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Drimys granadensis OX=224735 GN=ndhK PE=3 SV=2)

HSP 1 Score: 239.2 bits (609), Expect = 3.9e-62
Identity = 138/226 (61.06%), Postives = 147/226 (65.04%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQ SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKK+SREIYEDRI SQ+ENR FTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSREIYEDRIGSQQENRYFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHP-SRNFFKYKSSRSSYELV 193
           FHVG STH       +   +       P +  FFKYKSS SS+ELV
Sbjct: 181 FHVGRSTHTGNYDQGLLYKSPSTSEIPPETETFFKYKSSVSSHELV 226

[Close]

BLAST of Sed0003172 vs. ExPASy TrEMBL
Match: A0A286KU03 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma cardiospermum OX=1739658 GN=ndhK PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSYTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy TrEMBL
Match: A0A291IAF7 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma laxiflorum OX=2041848 GN=ndhK PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.9e-66
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSYTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy TrEMBL
Match: A0A109WWM3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=ndhK PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSSTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy TrEMBL
Match: A0A291IBB8 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma burmanicum (nom. inval.) OX=1348122 GN=ndhK PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSSTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. ExPASy TrEMBL
Match: A0A291IB79 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma longipes OX=555431 GN=ndhK PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 145/225 (64.44%), Postives = 149/225 (66.22%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           FHVGPSTH       +           P   FFKYKSS SSYELV
Sbjct: 181 FHVGPSTHTGNYNQGLLYQPSSTSETIPPETFFKYKSSVSSYELV 225

[Close]

BLAST of Sed0003172 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-58
Identity = 128/225 (56.89%), Postives = 143/225 (63.56%), Query Frame = 0


Query: 1   MNSIEFPLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
           MNSI+FP+LDRTT+ SVISTT NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR
Sbjct: 1   MNSIKFPILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60

Query: 61  YGSVPRSSPRQCRLNFNNGDANAR--------------TKICYCYGSCTITGGMLKIDSY 120
           YG VPRSSPRQ  L    G    +               K     G+CTITGGM   DSY
Sbjct: 61  YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120

Query: 121 SIVR-------------------ESVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHK 180
           S VR                   E+VIDAITKLRKKI+REIY+DRI+ Q+ NRCFTTNHK
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQQGNRCFTTNHK 180

Query: 181 FHVGPSTHLWKLRSRITLSTIIYFRDHPSRNFFKYKSSRSSYELV 193
           F V  S H+      + L       +  +  FFKYKS  SS+ELV
Sbjct: 181 FFVVRSPHIGNYDQEL-LYPPSSTSEISTETFFKYKSPVSSHELV 224

[Close]

BLAST of Sed0003172 vs. TAIR 10
Match: AT5G11770.1 (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial )

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 43/137 (31.39%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 23  NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGSVPRSSPRQ--CRL---NFN 82
           +DL NW+R  S+WP+ +G +CC +E      +R+D DR+G + R SPRQ  C +      
Sbjct: 73  DDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLT 132

Query: 83  NGDANARTKI---------CYCYGSCTITGGMLKIDSYSIVR------------------ 127
           N  A A  K+             GSC   GG     SYS+VR                  
Sbjct: 133 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPT 192

The following BLAST results are available for this feature:

BLAST of Sed0003172 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009430631.1	1.6e-65	64.44	NADH dehydrogenase subunit K [Gynostemma cardiospermum] >YP_009439808.1 NADH deh...	[more]
YP_009945421.1	2.1e-65	64.60	NADH-plastoquinone oxidoreductase subunit K [Sechium edule] >QOE55951.1 NADH-pla...	[more]
YP_009236284.1	2.1e-65	64.44	NADH-plastoquinone oxidoreductase subunit K [Gynostemma pentaphyllum] >YP_009440...	[more]
YP_009439895.1	3.6e-65	64.00	NADH dehydrogenase subunit K [Gynostemma caulopterum] >YP_009468865.1 NADH dehyd...	[more]
YP_009447539.1	6.2e-65	64.44	NADH dehydrogenase subunit K [Cucurbita moschata] >YP_009505084.1 NADH dehydroge...	[more]

BLAST of Sed0003172 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH1	1.1e-67	64.00	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q0ZJ16	5.4e-64	62.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Vitis vinifera OX=297...	[more]
Q68S02	1.6e-63	62.67	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Panax ginseng OX=4054...	[more]
Q0G9L5	2.3e-62	61.78	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Liriodendron tulipife...	[more]
Q06GZ3	3.9e-62	61.06	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Drimys granadensis OX...	[more]

BLAST of Sed0003172 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A286KU03	7.9e-66	64.44	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma cardiosper...	[more]
A0A291IAF7	7.9e-66	64.44	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma laxiflorum...	[more]
A0A109WWM3	1.0e-65	64.44	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma pentaphyll...	[more]
A0A291IBB8	1.0e-65	64.44	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma burmanicum...	[more]
A0A291IB79	1.0e-65	64.44	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Gynostemma longipes O...	[more]

BLAST of Sed0003172 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	6.0e-58	56.89	photosystem II reaction center protein G	[more]
AT5G11770.1	1.0e-09	31.39	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12280		coord: 7..85 e-value: 3.3E-16 score: 60.9
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 3..73
None	No IPR available	PANTHER	PTHR11995:SF14	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 111..155
None	No IPR available	PANTHER	PTHR11995:SF14	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 3..73
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 111..155
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 16..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003172.1	Sed0003172.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0005488	binding
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor