Sed0003082 (gene) Chayote v1

Overview


Name	Sed0003082
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cytochrome c oxidase assembly factor 6
Location	LG08: 4092497 .. 4093567 (+)
RNA-Seq Expression	Sed0003082
Synteny	Sed0003082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACTGGGCCCAAATCGGAAGCCCGAACCCGGTGAGCGAAAACCCCCAAATCCAAAAGAACTCCGTCTCTGCGGCGAGAACTCAAACCATGGCGGTTGAAGCCGACGCATCTGCAAGCGAAGATGAAGTTCACGGCGACGTTCTAGCGGAATCCAGACAAGCTTGCTACAAGGTTCCATCTCTAAATCATCACTCAATTTCCACGATTTCTGTTTCGTTATATGAATGTTTGAATGTTAATAAGATCTCAATTTGATCGCATCTGAACGAACAAGGCTCGCGATGCTTTTTACGCTTGTGTTGAGAATCAATCGGACAAAAAGCCCACTGAAATCGCTTCTGTCGGCCTTCTTTACCCCGCCGAGTGTAAACCCTTGAGGGCCGAGTTCGTCAGCCTTTGTAGGGCTTCTTGGGTAAACGCCAATTCCTGATCAATTTGGATTTCGATAGCAGTTTCGTAAATAGGGTTTTTGAATTCTGGTGTTTTTGATTTGGTTGGTAGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAGAGACTCTTAGATGACAAAGATTCGAGGAAAGGTCCTTTGATTCTTCCGCAGCCTTATACTTTTAAACCAACTACTTGAACTGAAAATACCCCTCCAGGTGCTGGCATGTATTTCTCGACCAAGAGGTTGCAGGTTCGAATCCCTTAAAACGCTTCCGGTGGAACTACTTTGGGCGGTCATGGTCAGAATCTCATTACTATCGTTATTTTTGTTATTTTTGCTTTTTTTACTCTGTGTAGAGAGGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAAATACCAACATACCAAAGCCTGTTTCCTCCCTGTTGTTTTTTATAGCTTTAAGGTATGGTAGTTCTGGCTTCTTATCAGTATGATCATGATGTAATCAATAAACATACAATGCCCTAAAATTTTGTGAGTTCGTTATATCGTCAAAATTGCTGAGTTTAGGGTGCAAGGCCAACAAGAGCTTAGCTCAAATGGCATGATTATAATTTATGATCAATAGGTCATGAATTTAAATCTCTC

mRNA sequence

TGACTGGGCCCAAATCGGAAGCCCGAACCCGGTGAGCGAAAACCCCCAAATCCAAAAGAACTCCGTCTCTGCGGCGAGAACTCAAACCATGGCGGTTGAAGCCGACGCATCTGCAAGCGAAGATGAAGTTCACGGCGACGTTCTAGCGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTACGCTTGTGTTGAGAATCAATCGGACAAAAAGCCCACTGAAATCGCTTCTGTCGGCCTTCTTTACCCCGCCGAGTGTAAACCCTTGAGGGCCGAGTTCGTCAGCCTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAGAGACTCTTAGATGACAAAGATTCGAGGAAAGGTCCTTTGATTCTTCCGCAGCCTTATACTTTTAAACCAACTACTTGAACTGAAAATACCCCTCCAGGTGCTGGCATGTATTTCTCGACCAAGAGGTTGCAGGTTCGAATCCCTTAAAACGCTTCCGGTGGAACTACTTTGGGCGGTCATGGTCAGAATCTCATTACTATCGTTATTTTTGTTATTTTTGCTTTTTTTACTCTGTGTAGAGAGGATTGTGGCAATAGATTTCATAATAATGTCAATCTTCTTACCAAATACCAACATACCAAAGCCTGTTTCCTCCCTGTTGTTTTTTATAGCTTTAAGGTATGGTAGTTCTGGCTTCTTATCAGTATGATCATGATGTAATCAATAAACATACAATGCCCTAAAATTTTGTGAGTTCGTTATATCGTCAAAATTGCTGAGTTTAGGGTGCAAGGCCAACAAGAGCTTAGCTCAAATGGCATGATTATAATTTATGATCAATAGGTCATGAATTTAAATCTCTC

Coding sequence (CDS)

ATGGCGGTTGAAGCCGACGCATCTGCAAGCGAAGATGAAGTTCACGGCGACGTTCTAGCGGAATCCAGACAAGCTTGCTACAAGGCTCGCGATGCTTTTTACGCTTGTGTTGAGAATCAATCGGACAAAAAGCCCACTGAAATCGCTTCTGTCGGCCTTCTTTACCCCGCCGAGTGTAAACCCTTGAGGGCCGAGTTCGTCAGCCTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAGAGACTCTTAGATGACAAAGATTCGAGGAAAGGTCCTTTGATTCTTCCGCAGCCTTATACTTTTAAACCAACTACTTGA

Protein sequence

MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECKPLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT

Homology

[Close]

BLAST of Sed0003082 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEADAS   DEVH DVLAESRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
            LRA FV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPLILPQPYTFKPT
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPT 113

[Close]

BLAST of Sed0003082 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 101/114 (88.60%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEADAS   DEVH DVLA SRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
            LRAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL LPQPYTFKPT+
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.3e-50
Identity = 98/113 (86.73%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEAD+S   DEVH DVL+ESRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
            LRA++V LCRASWVKHFDRKFCQNSRVQRLLDDKD R+GPLILPQPYTFKPT
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPT 113

[Close]

BLAST of Sed0003082 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 3.7e-49
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA+E D S   +EVH DVLAE RQACYKARDAFYACVE +SDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
             RAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA E D S   +EVH DVLAE RQACYKARDAFYACVE +SDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
             RAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 101/114 (88.60%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEADAS   DEVH DVLA SRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
            LRAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL LPQPYTFKPT+
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 98/113 (86.73%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEAD+S   DEVH DVL+ESRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
            LRA++V LCRASWVKHFDRKFCQNSRVQRLLDDKD R+GPLILPQPYTFKPT
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPT 113

[Close]

BLAST of Sed0003082 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 98/113 (86.73%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MAVEAD+S   DEVH DVL+ESRQACYKARDAFYACVE +SDKKPTEIASVGL+YPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
            LRA++V LCRASWVKHFDRKFCQNSRVQRLLDDKD R+GPLILPQPYTFKPT
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPT 113

[Close]

BLAST of Sed0003082 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.8e-49
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA+E D S   +EVH DVLAE RQACYKARDAFYACVE +SDKKPTEIASVGLLYPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
             RAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. ExPASy TrEMBL
Match: A0A6J1EDW1 (cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC111433269 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA E D S   +EVH DVLAE RQACYKARDAFYACVE +SDKKPTEIASVGLLYPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPTT 115
             RAEFV LCRASWVKHFDRKFCQNSRVQRLLDDKDSR+GPL+LPQPYTFKPT+
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of Sed0003082 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-42
Identity = 76/113 (67.26%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA++  AS++ ++VH DVL ++R ACYKARDAFYAC+E +S KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
             R +FV+ CR+SWVKHFDR++C+N RVQRLLDD D RKGP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of Sed0003082 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-42
Identity = 76/113 (67.26%), Postives = 95/113 (84.07%), Query Frame = 0


Query: 1   MAVEADASASEDEVHGDVLAESRQACYKARDAFYACVENQSDKKPTEIASVGLLYPAECK 60
           MA++  AS++ ++VH DVL ++R ACYKARDAFYAC+E +S KKPTEIA+VGLLYP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  PLRAEFVSLCRASWVKHFDRKFCQNSRVQRLLDDKDSRKGPLILPQPYTFKPT 114
             R +FV+ CR+SWVKHFDR++C+N RVQRLLDD D RKGP+ LPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of Sed0003082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878579.1	3.0e-51	90.27	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_022134674.1	1.1e-50	88.60	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_008443871.1	4.3e-50	86.73	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022973432.1	3.7e-49	85.09	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]
XP_022926034.1	8.2e-49	85.09	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]

BLAST of Sed0003082 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	5.5e-51	88.60	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	2.1e-50	86.73	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	2.1e-50	86.73	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1I7I2	1.8e-49	85.09	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A6J1EDW1	4.0e-49	85.09	cytochrome c oxidase assembly factor 6 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Sed0003082 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	4.6e-42	67.26	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	4.6e-42	67.26	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 21..92 e-value: 4.6E-18 score: 65.2
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 5..91 e-value: 4.9E-10 score: 41.2
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 22..82
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003082.1	Sed0003082.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV