Sed0003068 (gene) Chayote v1

Overview


Name	Sed0003068
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RALF-like 10
Location	LG01: 70397181 .. 70397408 (+)
RNA-Seq Expression	Sed0003068
Synteny	Sed0003068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGTGGATGATATGTTTTCTTTTCATTAGCATGGTGGTTATGGCTCAAGACACTGCTGCTGAGAAAATTTTTCTTAAATTTAATGTTTGTCAACAGCCTTCACCACCTCCTATTTGTCTTGTAGGCAAGAAGAAATCTCCGTCTCCCGCCAATTCCTATCGTCGTGGTTGCTCGGCGATCCATCGTTGTCGTGGCGATCACCACCCGATCCCAAGGGAGTAG

mRNA sequence

ATGAAGTTGTGGATGATATGTTTTCTTTTCATTAGCATGGTGGTTATGGCTCAAGACACTGCTGCTGAGAAAATTTTTCTTAAATTTAATGTTTGTCAACAGCCTTCACCACCTCCTATTTGTCTTGTAGGCAAGAAGAAATCTCCGTCTCCCGCCAATTCCTATCGTCGTGGTTGCTCGGCGATCCATCGTTGTCGTGGCGATCACCACCCGATCCCAAGGGAGTAG

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGTTTTCTTTTCATTAGCATGGTGGTTATGGCTCAAGACACTGCTGCTGAGAAAATTTTTCTTAAATTTAATGTTTGTCAACAGCCTTCACCACCTCCTATTTGTCTTGTAGGCAAGAAGAAATCTCCGTCTCCCGCCAATTCCTATCGTCGTGGTTGCTCGGCGATCCATCGTTGTCGTGGCGATCACCACCCGATCCCAAGGGAGTAG

Protein sequence

MKLWMICFLFISMVVMAQDTAAEKIFLKFNVCQQPSPPPICLVGKKKSPSPANSYRRGCSAIHRCRGDHHPIPRE

Homology

[Close]

BLAST of Sed0003068 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          MK W+IC +FISM+VM+Q+  A+   LKF N C  PSPPP C   K K  +P N Y RGC
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSC-SSKVKDHAPTNPYDRGC 60

Query: 61 SAIHRCRGD 69
          SAIHRCRGD
Sbjct: 61 SAIHRCRGD 68

[Close]

BLAST of Sed0003068 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          M+ W+IC + I M+V++QD A+E  FLKF + CQQP+PPP C +G   +  PAN YRRGC
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIG---NAVPANPYRRGC 60

Query: 61 SAIHRCRG 68
          S I RCRG
Sbjct: 61 SKITRCRG 65

[Close]

BLAST of Sed0003068 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 4.9e-10
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          MK W+IC +FISM+V+    AAEK +L+F + C QP+PPP C   + K    AN Y RGC
Sbjct: 1  MKSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTC--SEVKEQVEANPYNRGC 60

Query: 61 SAIHRCRG 68
          SAIHRCRG
Sbjct: 61 SAIHRCRG 66

[Close]

BLAST of Sed0003068 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          M+ W+IC + ISM+V++Q+ A+E  FLKF + CQQP+PP  C +G   +  PAN YRRGC
Sbjct: 1  MRSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIG---NAVPANPYRRGC 60

Query: 61 SAIHRCRG 68
          S I RCRG
Sbjct: 61 SKITRCRG 65

[Close]

BLAST of Sed0003068 vs. NCBI nr
Match: KAE8653619.1 (hypothetical protein Csa_007305 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 12  SMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGCSAIHRCRGD 69
           SM+VM+Q+  A+   LKF N C  PSPPP C   K K  +P N Y RGCSAIHRCRGD
Sbjct: 51  SMLVMSQEVGAQTNHLKFPNPCDLPSPPPSC-SSKVKDHAPTNPYDRGCSAIHRCRGD 107

[Close]

BLAST of Sed0003068 vs. ExPASy Swiss-Prot
Match: O64466 (Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-08
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+IC L I   V+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWLICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. ExPASy Swiss-Prot
Match: F4ISE2 (Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-08
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+IC L I   V+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWVICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. ExPASy Swiss-Prot
Match: F4ISE1 (Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.0e-07
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+I  L I  VV+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-07
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKFNV---CQQPSPPPICLV--GKKKSPSPANSY 60
          MK  +IC L I   V+A    + +  L + V   C  P+PPP C     ++K+P+PAN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 RRGCSAIHRCRGD 69
          RRGCS I RC+ D
Sbjct: 61 RRGCSKITRCKRD 73

[Close]

BLAST of Sed0003068 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          MK W+IC +FISM+VM+Q+  A+   LKF N C  PSPPP C   K K  +P N Y RGC
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSC-SSKVKDHAPTNPYDRGC 60

Query: 61 SAIHRCRGD 69
          SAIHRCRGD
Sbjct: 61 SAIHRCRGD 68

[Close]

BLAST of Sed0003068 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.2e-11
Identity = 38/68 (55.88%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          M+ W+IC + I M+V++QD A+E  FLKF + CQQP+PPP C +G   +  PAN YRRGC
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIG---NAVPANPYRRGC 60

Query: 61 SAIHRCRG 68
          S I RCRG
Sbjct: 61 SKITRCRG 65

[Close]

BLAST of Sed0003068 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKKKSPSPANSYRRGC 60
          MK W+IC   I M+V+ Q+ AAE   LKF + C QPSPPP C    +     AN Y R C
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTC--PNRDKVEEANPYNRDC 60

Query: 61 SAIHRCRG 68
          SAI+RCRG
Sbjct: 61 SAINRCRG 66

[Close]

BLAST of Sed0003068 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.2e-07
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKF-NVCQQPSPPPICLVGKK-KSPSPANSYRRG 60
          MK W+ICF  +SM+VM+ + AAE  FL F ++C QPSPP  C   ++  SP P   Y RG
Sbjct: 34 MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIP---YDRG 93

Query: 61 CSAIHRCRG 68
          CS I RCRG
Sbjct: 94 CSPILRCRG 99

[Close]

BLAST of Sed0003068 vs. ExPASy TrEMBL
Match: A0A178VZM1 (RALFL10 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g14380 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKFNV---CQQPSPPPICLV--GKKKSPSPANSY 60
          MK W+IC L I   V+A+   + + +L + V   C  P+PPP C     ++K+P+PAN Y
Sbjct: 1  MKAWVICLLVIFAAVIAEPVESRRKYLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 RRGCSAIHRCRGD 69
          RRGCS I RC+ D
Sbjct: 61 RRGCSKITRCKRD 73

[Close]

BLAST of Sed0003068 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-09
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+IC L I   V+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWLICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+IC L I   V+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWVICLLVICAAVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-08
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKI--FLKFNVCQQPSPPPICLV--GKKKSPSPANSYR 60
          MK W+I  L I  VV+A+   +     +   N C  P+PPP C     ++K+P+P N Y 
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 60

Query: 61 RGCSAIHRCRGD 69
          RGCS IHRCR D
Sbjct: 61 RGCSKIHRCRRD 72

[Close]

BLAST of Sed0003068 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-08
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDTAAEKIFLKFNV---CQQPSPPPICLV--GKKKSPSPANSY 60
          MK  +IC L I   V+A    + +  L + V   C  P+PPP C     ++K+P+PAN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 RRGCSAIHRCRGD 69
          RRGCS I RC+ D
Sbjct: 61 RRGCSKITRCKRD 73

[Close]

BLAST of Sed0003068 vs. TAIR 10
Match: AT4G13075.1 (RALF-like 30 )

HSP 1 Score: 40.4 bits (93), Expect = 7.3e-04
Identity = 27/72 (37.50%), Postives = 36/72 (50.00%), Query Frame = 0


Query: 1  MKLWMICFLFISMVVMAQDT--AAEKIFLKFNV---CQQPSPPPICLV--GKKKSPSPAN 60
          MK W+IC + IS+ +M + T  A    FL   V   C +P+PPP C       K     N
Sbjct: 1  MKAWVICLMVISIFMMIEPTLAAGGGKFLNPGVLDPCLRPNPPPECQAPGSAGKPRERVN 60

Query: 61 SYRRGCSAIHRC 66
           Y+ GCS + RC
Sbjct: 61 EYKVGCSKLTRC 72

The following BLAST results are available for this feature:

BLAST of Sed0003068 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637268.1	1.2e-11	59.42	hypothetical protein CSA_017684 [Cucumis sativus]	[more]
XP_022947821.1	1.7e-10	55.88	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_038877580.1	4.9e-10	55.88	protein RALF-like 11 [Benincasa hispida]	[more]
XP_023533089.1	2.4e-09	54.41	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAE8653619.1	1.7e-07	58.62	hypothetical protein Csa_007305 [Cucumis sativus]	[more]

BLAST of Sed0003068 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64466	2.1e-08	43.06	Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1	[more]
F4ISE2	2.8e-08	43.06	Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1	[more]
F4ISE1	4.0e-07	43.06	Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1	[more]
O65919	9.0e-07	42.47	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]

BLAST of Sed0003068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0X3	5.7e-12	59.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A6J1G7J2	8.2e-11	55.88	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0LI94	1.1e-07	51.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A0A0LZK3	7.2e-07	52.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]
A0A178VZM1	1.2e-06	43.84	RALFL10 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g14380 PE=3 SV=1	[more]

BLAST of Sed0003068 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.5e-09	43.06	ralf-like 11	[more]
AT2G19045.1	2.0e-09	43.06	RALF-like 13	[more]
AT2G19040.1	2.9e-08	43.06	RALF-like 12	[more]
AT2G19020.1	6.4e-08	42.47	ralf-like 10	[more]
AT4G13075.1	7.3e-04	37.50	RALF-like 30	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 32..67 e-value: 1.7E-6 score: 28.9
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..68
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003068.1	Sed0003068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region