Sed0002988 (gene) Chayote v1

Overview
NameSed0002988
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 40214339 .. 40214806 (-)
RNA-Seq ExpressionSed0002988
SyntenySed0002988
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGACAGAGCAAAACAGAACCCTAGTTCTTGCGTACCTCTTGGCGAGCCTCCTCATATCTGCTCAATGCGTCCATTCCATCGGCTTTGTGGATCCATATGAATCAGAATCGCGATTGGGAAGAAGATTCACGTCCGATGATACGGTGAGTCGATTATTTCTCCGTTTTACATTCAATTGTTGACAAAATCTTATGGTTTTTGAAAATTTTGGGAAAGAACAGGTCAGAGCTAGCAGTCGGAAGAATCCGTCAGGGCCGAACCCTATTGGGAATCGAAACCCTCCGTCAATCCATGGCTGAATCAAGATGCCCAATCTTTTTGGAGTTTTGATGAAGAATTTTTATTTTTATTATCAATTTTGGCAATGGTGGGAAGTGTTTTCAATTTGCATTCGAATGTGTTTTGTTTGAGGCACACAAACCTTGTAGAGTTCTATTAATCTCAAATACAATATAAGCTCAACAG

mRNA sequence

AAATGACAGAGCAAAACAGAACCCTAGTTCTTGCGTACCTCTTGGCGAGCCTCCTCATATCTGCTCAATGCGTCCATTCCATCGGCTTTGTGGATCCATATGAATCAGAATCGCGATTGGGAAGAAGATTCACGTCCGATGATACGGTCAGAGCTAGCAGTCGGAAGAATCCGTCAGGGCCGAACCCTATTGGGAATCGAAACCCTCCGTCAATCCATGGCTGAATCAAGATGCCCAATCTTTTTGGAGTTTTGATGAAGAATTTTTATTTTTATTATCAATTTTGGCAATGGTGGGAAGTGTTTTCAATTTGCATTCGAATGTGTTTTGTTTGAGGCACACAAACCTTGTAGAGTTCTATTAATCTCAAATACAATATAAGCTCAACAG

Coding sequence (CDS)

ATGACAGAGCAAAACAGAACCCTAGTTCTTGCGTACCTCTTGGCGAGCCTCCTCATATCTGCTCAATGCGTCCATTCCATCGGCTTTGTGGATCCATATGAATCAGAATCGCGATTGGGAAGAAGATTCACGTCCGATGATACGGTCAGAGCTAGCAGTCGGAAGAATCCGTCAGGGCCGAACCCTATTGGGAATCGAAACCCTCCGTCAATCCATGGCTGA

Protein sequence

MTEQNRTLVLAYLLASLLISAQCVHSIGFVDPYESESRLGRRFTSDDTVRASSRKNPSGPNPIGNRNPPSIHG
Homology
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BLAST of Sed0002988 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 0 

Query: 1  MTEQNRTLVLAYLLASLLISAQCVHSIGFVDPYES----ESRLGRRFTSDDT------VR 60
          MTEQNRTLVLAYLL  LLIS+QCVHSIGFV+ +ES    +++ GR+F   DT      VR
Sbjct: 5  MTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGREQVR 64

Query: 61 ASSRKNPSGPNPIGNRNPPSIHG 74
          AS RKNPSGPNPIGNR+PPSI G
Sbjct: 65 ASGRKNPSGPNPIGNRHPPSIQG 87

The following BLAST results are available for this feature:
BLAST of Sed0002988 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600053.12.4e-1767.47hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Sed0002988 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0002988 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0002988 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002988.1Sed0002988.1mRNA