Sed0002962 (gene) Chayote v1

Overview


Name	Sed0002962
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cold-regulated protein
Location	LG07: 30541250 .. 30541483 (+)
RNA-Seq Expression	Sed0002962
Synteny	Sed0002962

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGGGACGGGCGTTCCGTTGTGCATCGAGTGTGGGACCCGCAGCAACCCGTGCCGGTGCAAGGTGGTGGGGCCGACGCTGGGGTTGGTCGCCTTCGTGGTGGCGGCGGCGGTGGAGTGGCCGGTGGGAGCTCTGGTTTACTGCTTCCGCCACCGTAAGGGCCGCCGCATCATGGCGCACCCGGCCACTGTCGTTTTCCCCTCCGTGTCTAATGCAGTTCCCATTTGA

mRNA sequence

ATGGCGGTGGGGACGGGCGTTCCGTTGTGCATCGAGTGTGGGACCCGCAGCAACCCGTGCCGGTGCAAGGTGGTGGGGCCGACGCTGGGGTTGGTCGCCTTCGTGGTGGCGGCGGCGGTGGAGTGGCCGGTGGGAGCTCTGGTTTACTGCTTCCGCCACCGTAAGGGCCGCCGCATCATGGCGCACCCGGCCACTGTCGTTTTCCCCTCCGTGTCTAATGCAGTTCCCATTTGA

Coding sequence (CDS)

ATGGCGGTGGGGACGGGCGTTCCGTTGTGCATCGAGTGTGGGACCCGCAGCAACCCGTGCCGGTGCAAGGTGGTGGGGCCGACGCTGGGGTTGGTCGCCTTCGTGGTGGCGGCGGCGGTGGAGTGGCCGGTGGGAGCTCTGGTTTACTGCTTCCGCCACCGTAAGGGCCGCCGCATCATGGCGCACCCGGCCACTGTCGTTTTCCCCTCCGTGTCTAATGCAGTTCCCATTTGA

Protein sequence

MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATVVFPSVSNAVPI

Homology

[Close]

BLAST of Sed0002962 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of Sed0002962 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 8.0e-32
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF  AA VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. NCBI nr
Match: XP_031737948.1 (uncharacterized protein LOC116402578 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          M VG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 4.0e-31
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. ExPASy TrEMBL
Match: A0A1S3C5C8 (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of Sed0002962 vs. ExPASy TrEMBL
Match: A0A6J1CQ64 (uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013291 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+CIECGT SNPCRCKVVGPTLG +AF  AA VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 8.6e-32
Identity = 66/77 (85.71%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          M VG GVP+CIECGT SNPCRCKVVGPTLG +AF VAA VEWPVGALV+CFRH KGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-31
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MAVG GVP+C+ECGT  NPCRCKVVGPTLG +AF VAA VEWPVGALVYCFRH KGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHP TVV+PSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of Sed0002962 vs. ExPASy TrEMBL
Match: A0A218XJX3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MAVGTGVPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIM 60
          MA+G GVP+C+ECGT SNPCRCKVVGPTLG +AF  AA VEWP+GALVYCFRH KGRRIM
Sbjct: 1  MALGVGVPICVECGTTSNPCRCKVVGPTLGFLAFTAAAVVEWPLGALVYCFRHMKGRRIM 60

Query: 61 AHPATVVFPSVSNAVPI 78
          AHPATVV+PSV+NA+PI
Sbjct: 61 AHPATVVYPSVTNAIPI 77

[Close]

BLAST of Sed0002962 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 120.6 bits (301), Expect = 5.7e-28
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 7  VPLCIECGTRSNPCRCKVVGPTLGLVAFVVAAAVEWPVGALVYCFRHRKGRRIMAHPATV 66
          +P+C++CGT  NPCRCKVVGPTLGLVAFV A  VEWPVGALVY F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VFPSVSNAVPI 78
          V+P VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of Sed0002962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457074.1	6.1e-32	85.71	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
XP_022143411.1	8.0e-32	87.01	uncharacterized protein LOC111013291 [Momordica charantia]	[more]
XP_031737948.1	1.8e-31	85.71	uncharacterized protein LOC116402578 [Cucumis sativus]	[more]
XP_023528466.1	3.0e-31	84.42	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	4.0e-31	84.42	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]

BLAST of Sed0002962 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5C8	3.0e-32	85.71	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
A0A6J1CQ64	3.9e-32	87.01	uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0LA45	8.6e-32	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
A0A6J1FA13	1.9e-31	84.42	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A218XJX3	7.3e-31	80.52	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr027786 PE=4 SV=1	[more]

BLAST of Sed0002962 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	5.7e-28	73.24	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002962.1	Sed0002962.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane