Sed0002959 (gene) Chayote v1

Overview


Name	Sed0002959
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG09: 8453814 .. 8464312 (-)
RNA-Seq Expression	Sed0002959
Synteny	Sed0002959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTGTCTCTTGTGCATGTCTTGATCTCGGGCCTCAACTTTGACAGCTCAATGAAGCGATGAATCAAAATGGCCCTAGCTCGCACTACTCATCCATTTCCTCTTCTCTTTCGATTATCCAGCGAAACTCTGGCGATCTCTGCATTTCCCTCGATTAGTTGCATTTGATTGATCGATCGAGACTATGTATCAGAGAATTGATACATGAACGGTAAGATCTAACTCCTTTCTCCTTCTTTTCGAATTCAATCTTTCTCTATCAGTTTTGATCTATCTTACTAACTCGCTTTGATTCTTGTGCGAGATTCACAACAAGAGTAAAACACACACAAAAGATTGAGAGTAAGAGAGTAAGAGAAAGTATACACCAAGGTTTTGCAGTTCAGCAACTCAGGCTTACTCCATAGGAAGAACACAAGTAAGTTCGTTTTTATTTCTAGAAAGCTTTTACACATAGTACATCACACATACACTCTCACATGCATTCACTCACCACACACTTTCTATTACGAAATGATTAGTTCACATTATATATTTTCTGTTTGCTGTAAGGCCTTTAGAAGATAGGTGAGCTGTTAGATGATTAGAACCTTAACCGAAATCTATTGCCTACTCTCTAATTGAAATATGTTAGCCAGAAGTAGTTGATTGTTTAGTTAGAGTGTTTTCCTGATGTTCAAAGCCCTTGAAAATATTTTTATTTTTTTAGTTATAGGTCTGATAGATAAAAATTAAACAATTAAAGCAAGTGGTATTTATATATTTAGTTTTTACAAAAAGTAAAGCCTAATCAACTTTTAGTATACAATCGAACAAATTAAAGTCCTTAAAACTATAAAATGAATCTTTCCATCTTATCCTATTAAAAAACATAAATCCTAAAGAAAGGAATCAAAGTTTCAAAAGGCTATCAACAAAAGCAATAACTTGGTAACATTAGTATATATACGATAATATAAAGATCATGAATTCAAATCTACTATCTCTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATATATATATATATCAAACATGCCCCTAAATTATTACATTTTTTCAAACTTACCCCTAAACTTTCAAAAGTTTCAAAAGTACCTTTAAACTTTACAAAACGTTTAAAAAATACCTTTACCGTTAGTTTTGGATAGAAACCGTTAAGATTTTGTTTAAAAAATACCGCTGAACTTTAAAAAGTTTAAAAAATAATCTTGGTCTTTAGAAAAACATAAATTTTAAATAATTTAACTTTCTAAATATTTGAATTTATTGTGTCAAATTTTGGCTGGATGAACTAGAAATTTTTGATGTCTCATAAATGCTTTCAAATTGAGATTTATTGTTTATTATTACAACTAGAATTTATAATTAATTTAAAATCTTATAATTTGTTTAAAGTTCTTAGTTTTTTTTATTATCAATTGCAAATATATATAACATTAAATTTGAAAATTTAAAGCACTTTACAATGAACAATAAAATATTAGTTGGTTTAAGCTAACATTTAATGACTTTTAAATAATTTTATGCATCTAAAAACAAAGATAAAATGATCAACAATAATGATTAGAAAAATATGTTAAGAAATTAATTTACTAACAATTTAATTAATTAAATAAACATTAATATTGACATAAAAACATCAATAAGTTAAAAATACAAAGATAAAAAAAACTCGTTTACAAATAAATAGATAGCAGTTAAGGGTGTACATGGTCTGGTTGAGTTAGAGGATTTTTTTGGATCAACTACACTTTTTGAGTTGGTCAAACCTCCAACCCTATGTGTTGGGTTTTTGGCAAAATATTAGAAGTGAATTTGTCCCACATCGAAAAGATGCAAGGTAGTAGTGTGCTCCAAGCACTATAAAAGGAGCATAAGGCTTTGGTTTCAAAGCATCCCAGTCAAAAGCATTTTAAGCTTAGTGTATTGACTCTAGTTAAATTCCATTTGTATTCTCTTATGGAGAGTGGGCAAAGAGTGTGAGTAGTATAAATTTTGAAGAGAGTGCTTTTGTAATTGGGGTCGGGGAGAGAATTCTATGTGATTGTAGCAAATTTTCACATAGTGGAAGTTCTTTCTGTCCGTGGTTTTTTCTCCAATTCAGAGTTTTTCCAAGTAAATCCTTGTGTTCTCTATTTTGTTTTTCCTTTTAATTTCTCAATATTTTTATGCTTATTCCTGCTGTTATTAGGGAAGGGTTTTTTCCCAACAAGTGGTATCAGAGCCAACTTTTGCAGTTTCTTGAATTTCTGAGTATGCTCTGTGGTTGCAGCTTTGTCTGAGCTTCCACATCAGAAATGAATTCTTGAAACAAGTTACAACTGGGTGGTTCAATATTTACAGATTTGCTAGGATTGAAGCAGAAATGGCAAGCTTTATGAGTTCAGTGGAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGCGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATTACACAAGGCTTTGAAGGGAAGATCAAGTAGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTTCAGTGGTAATTCTAACAAAAGTTCTAAGAAGTCCAGCATGAGTGATGATGAATGAGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGTCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTTTCAGGCAAAGAGCATTTCAAATCGGTTGTACCTGAAGGATCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTCAGATCATCTTAGTGTTCTCAATGGTGTTGTCTCTGAGCTGGAGGTAATTGGTGTGAAGATAGAGGACGAGGATAAGACACTAAGGCTTATCTTGTCACTTCCCCCTTCTTATGAACATATGAAACCAATTTTGATGTACGGAAAAGAGTCTTTAAATTTTGCAGAGGCTACTAATAAACTTCTATCGGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACTCATAAGAGGATTCAACACTAGTAGTTGGCAATTGGAAGAAGAAGAGAAACTTTGTGCAAAAGAGAAGTTGCTGGGAATGTGGACAACCTGGTCACATGAGAAACAATTGTCCTAATAGAGCAAGTTCGTCAAAGGGCTCTAGTTCGGATGCTGACGTGGTCTCTCTCGTCCGGGGATCTGGTGATGCCCTCTGAAGAAAGAAAGAAATCATCCTCATGGTATGTCCGCTTTGCCATGGTAGAGGATGTGATGTCAGCGGTTCCACAAGTTGGTATACAGGCATTGGCTTGGCGGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATGGCTGAAGGACTTCCAGGTAAGCCAAGTAGTGTTGGCTTTTTGGCCCTATCTCAAATTAATTAATTAATATTTTGATGATAACAAACTTGATATTATTTACTAATAATTTTGATGTTTTAAGATGTCAACAGTGTAGTGCTCGAAACAAGGATTCCAACGCAATTTGAATTACTCAAATCGGAGTTGAAACGAAGAAGTTATTGACAAAACAAGTTTGAACGAGAAAATCCAGAGAGCGGTGACGTGGCGGTGAGTGTACATCGTGGGCTATTTAGAAGTTGACATGTGGAGTTTTGGATGAGTGAAAAATGACAAATGGTGGCTTTTGGTAGTTTTGAAAATAAAAGAAAAAGAAAAAGAAAAGGAAAAAGAAATTTTTAAAAAAAAAAAAAATATTATACATATTTATATATATTCCAACGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGAACTGGTGAGTGAACGTTCTGATTGTTTTGAAAAATATATATATATATATATATATATATATATAATAATAATAATAATAATATTTTATATATATTATTTATTATTTTAACTTTTTACTTTTTTACTTTTAACCTTTTAACTTTTTACTTCTTTTAACTTTTAATCTCCACCATTCATTTTATATTTTATATATCCAATGGCTCAAATTAAATGTTGTCTTTTACCCCATTTCCCTCTCTTTTTAAACTCAATCTTCTTCTCCAAAATCACAACACAACTTTTATTATTCAATCTTCCAAAAATCAAAAGCTCCATTGTTGCTCTCTCCAAGCTCTCAACCTTTTCTTTTAGATTTTATTCTTGAGAGACATTGTATTGTGAGGATTTGGTTGTGTGAGATAAAATTTGTATATCCACTCTTTTGAGAGAGTTGTAAAGTGTGTTCCAAAAAAATTCTATACTTTGTAACGGTTTGATCTTGATCCGTGGAAAAGATCGAGTTTGCTCTTGAACTCGTAAAAGGAGCGGTTTACGGTTGGACTCTAATCCGTGGAAAGAGTTAAGCAAAAAGGTTTTTCAAAATCCCAAGAGGCGCTTGGGTAGTGGAGTAGGCTTGCCGAACCACTATAAATCACGGTGTCATCTTCTCTAACTCTTTCCTATTTACTAATTTTTAGTATTGTCTTTCATGCTTTAATTTGAATTGCTTTAAATCAAATTGGCTTACATAATCTAAATCAATCTTGTGTGGTGCATTATTGTTTCTTTTTAATCTCTTGTAAAAAGTTTGATATTTAGAATATCTTAAAGCTTATTTAGAAAAATTTGTGTAAAACCCTATTCACCCCCCCTCTAGGGTTGTCATACCGATCCAACAATTGGTATCAGAGCCAAGTTGCTCTTCTAGATTTTTAATATAAACTTTATTGTTTGAGCTTTATGGCAAACCTTGTAGGAAGTGGTATTAATGAAGGACAATCATCCTCTAGGCCTCCTTACTTCGATGGGTCAAATTATGGTTATTGGAAAATTAGAATGATGATATATTTGAAATCCATTGACTATAAGTTGTGGTTTAATGTTATTAAAGGTCCCAATATTCTCACTAAAAAGGTTAATGATAAAGATGTGCCTAAATTAGAAGATGAATGTGATGAAGATGAATTGAAAAAGCTTGCTTTTAATGCTAGAACTATGAACTATTTATATTGTGCCTTAAGTTGTGATGAGTTCAATAGAGTATCTATGTGTTCTTCGGCTAAAGAAATTTGGGATATTCTTGAAGTGACATATGAAGGAACAAGTCAAGTTAAAGAAACAAAAATTAGCATGCTTGTTCATAATTATGAATTGTTCAAGATGAATGAAAATGAATCTATTACCGAAATGTTTACTAGATTTACTAACATCACAAATTCTTTGAAGGGCCTTGGAAAAGAATATAGTACATCCGAAAATGTTAGGAAAATTCTTAGGTGTCTACCAAAGAATTGGGAAGCAAAGGTGACGGCAATACAAGAAGCAAAGGATCTCACCAAACTCTCTTTGGATGAACTAATTGGTTCTCTCATGACACATGAGATTACCATAAAAGAGAATATGGAAGATGAGTCCAAAAGAAGAAGAGTATTGCTTTAAAGTCTATCACCTTGGAAGTTGACTCTGAAGATGAAGATGTTCTTGATGAAGATGATATTGCATATTTTTCACGTAAGTATAAAAACTTCATCAAGAGGAAGAAACAATTCAAAAAGAACTTTTCCAACCAAAGAGAATCAAAAGGAGAAAAGAACAAGAAGGATGAGGTAATATGTTATGAATGCAAGAAACCGGGTCATATAAGAACGGATTGTCCACTCCTCAAATCATCCAAGAAATTCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGAAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGACAAAGGTGATGAACAAGATGATGAGGTAACTCTAGAATCCCCTTCTTATGATGAATTATTTGAAACTTTTGAAAACATGCAAAATGACTTAGAAAAGCTTGGTTCAAAATATAATGTGCTTAGAAAGAAATATAATACTCTTACTAGTGAAAATAAGACTTTACTTGATGAAATTACTTGCTTAAAATTGCATGAGCATGATATTGTGAAAATTGATAAAATAGATGTCTCTTGTGATGAACATGCTTTAGATTGTGATGAGAAAAATATCTTACTTGATAAAGTTAAATTTCTTGAGCAAGATTGTTGTGAAAAAGATAATTTGATTAAGTTGCTCAAAGAAAATGAATTAAATGTTTTGCATGAACTTGATAGGGCTAATGAGTCTATTAAAAAGTTAACTATAGGTGCCCAAAGATTGGATAAAATAATTGAAGTAGGAAAGTCTTATGGTGATAAAAGAGGTGTAGGTTACATTGATGAAGTTTCTACTCCTTCAACTTCTAAAACTATTTTTGTTAAAGCATCTCCTCTTGTATCTAAACTTAATATTCCTAAAATTGTGTCCAAACATGATAAATCTAGCTTTGTGCCTATATGTCATTATTGTGGTGTTAAAGGTCATATAAGACCTAAGTGTTTTAAATTAAAATATGCTCATACTACTACAAGAAGAAAATTTTCTCCAAAAGCAAAGTTTCATAGAAATAATTTCTCAAAGAAAAGTAGAGTACATAATTTTATTATAAGAGATAAATCATTGTATAATGTTGTTTGTTTTTCATGTGGCAAGTATGGACATAAATCTTATTCTTGTTACTTGTCTAAATCAAATGTGGTAAATGTGGATGCAAAAGTAAAATGGATTCCAAAGTTTAAAAATGCTAACCTTTTAGGGCCCAAACAAATATGGGTACCAAAGGATCAAACTTGAATATTTGTGTTTGTAGGTTTGTTTGAAAGCCTCCAAGAAAAATAAATGGTATTTGGATAGTGGTTGCTCAAGGCACATGACGGGAGACCAATCCAAGTTTGTCAATATTTTAAGAAAGGATGGAGGCTTAGTAACTTTTGGTGACAACAAGAAAGGTAAAATAATCGGTAAGGGTAGTATTGGTAATGCTTCTTCTACTTTGATTGAAAATGTACTTTTAGTTGATGGTTTGAAGCATGATTTACTTAGTATTAGTCAATTATGTGATAAAGGATTTAGAGTTATGTTTGATAAAAAGAATTGCATAATTGAAAATGCTAGTGATGGAAAAGTTTTATTTGTTGGAAATAGAGATGAAAATGTGTACACTCTTGATTTGAATGATTGTCCTATTAGTGATAAATGTCTTTCGGCTTTACAAAGTGATTCATGGTTATGGCATAGAAGATTAGGACATGCTAGCATGCACTTAATTTCAAATATTTCTAAAAGTTCCTTAGTTAGAGGTCTTCCCAATATTAAATTTGAAAAAGATAGAGTTTGTGATGCTTGTCAAATGGGTAAGCAAACTAAGTCATCTTTCAAATCTAAAAATATGATCTCTACATCTAGACCTCTTCAACTATTACACATGGATTTATTTGGCCCTTCTAGAATTGCTAGTTTTGGAGGGAATTATTATGCTTTTGTGATAGTTGATGATTTTTCAAGATATACTTGGGTTTTAATGCTAAAACATAAAGATAATGCTTTGAAAAGTTTTGCTAGTTTTGCAAAAAGAGTTCAAAATGAAAAGGGTTTCTCATTTCTAAAATTAGGAGTGATCATGGAGGAGAATTTGATAGCATTGCTTTTGAAAATTTTTGTGAAGAAAATGGTTTCTCTCATAACTTCTCCGCTCCAAGAACTCCTCAACAAAATGGTGTAGTTGAAAGGAAAAATCGTACTTTGCAAGAATATGCTAGATCTATGTTGCATGAGTATAATTTGCCTAAGTATTTTGGGCGGAAGCCGTTAATACCGCTTGTTATGTTTTAAATAGAGTTTTAATTAGACCTTCTTTAGATAAAACTCCTTACGAGCTTTGGCATGAAAAAGTCCCAAATATTGGGTATTTCAAAGTTTTTGGATGCAAATGTTTTATTTTGAACAACAAAGAAAAACTTGGAAAATTTGATTCTAAAACGGATGTTGGTATTTTTCTTGGTTATTCTTCTTCTAGTAAAGCTTATAGAGTTTTCAATAAGAGAACATTAGTTATTGAGGAATCTATGCATGTTGTGTTTGATGAATCTTGTAAAAATATTTCTAATGAGTCTATATGTGGTGATGCCTTAGAAGAAAATTTTGTAGATATAATTGTTAGTGATAAAGGTAAAGAAATTGCTCCATGTAAAGAAGAAATGAGCTTCAACGATAAGAATGAAGAATGTTCTTCGTCTATGCCTAAAGAATGGAGGTATGTTTCATCTCATCCCAAAGACTTGATTCTTGGTGATCCCGAACAAGGTGTGAAAACTCGTTCCTCTCTTAATTTATTTAATAATCTTTCTTTTGTTTCTCAAATTGAACCAAAAAGTTTTAAAGATGCCGAAAATGATGAATTTTGGATTTTAGCTATGCAAGAAGAGTTAAATCAATTTGAAAGAAACAAAGTTTGGGAATTAGTCCCTAGGCCTTCTAACATTTCTATTATTGGGACTAAATGGGTTTTTAGAAATAAAATGGATGAAAATGGAAATATAATTAGAAATAAAGCTAGACTTGTAGCTCAAGGTTATTGTCAAGAGGAAGATATAGATTATGAAGAAACTTTTGCACCCGTTGCTAGATTAGAAGCTATTAGAATGTTACGTGCTTTTGCTTCTTATAAGAATTTTATCTTGTATCAAATGGATGTAAAAAGTGCATTTTTAAATGGTTATATTATGGAGGAAGTTTATGTAGAACAACCTCCCGGATTTGAAAGTTTTGATTTGCCTAATCATGTTTATAAGTTGAAAAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATGATAGACTTAGCAACTTTCTTCTTAAAAATGATTTTAAAATGGGTAAACTTGATACTACTCTCTTCATCAAGACTAAGGAAAATGATATGCTTTTAGTGCAAATTTATGTAGATGATATTATTTTTGGTTCTACTAATCCTTCTTTGTGTGAAGAATTTTCTAAGTGTATGCATAGTGAGTTTGAAATGAGTATGATGGGAGAACTTAGCTTCTTTCTTGGACTTCAAATCAAACAACTCAAGAATGGTATTTTCATAAGTCAAGAGAAATACACAAAGGATTTGCTCAAAAGATTCAAACTCAATGAAGGTAAAATTGCAAAAACTTCAATGAGCACATCTACCAAACTTGACAAGGATGAAAAAGGTAAATGTGTGGACTTAAAAGCTTATCGAGGTATGATTGGATCTCTTCTTTATTTAACCGCAAGTAGACCCGATATCATGTTTAGTGTATGTCTTTGTGCTAGATTTCAATCTTGTCCTAAGGAATCTCATTTGCATGCCGTGAAAAGAATATTTAAATATTTACTTGGTACTATTGATTTAGGCTTGTGGTATCCTAGAAATGTTGAATTTAATTTAGTAGGATATTCGATGCGGATTTTGCGGGAAGTTTACTTGATCGTAAAAGTACTAGTGGAACTTGCCAATTTCTTGGAAGTTCCTTAGTATCTTGGTTTAGCAAAAGCAAAATTCGGTTGCCTTATCTACTACCGAGGCGGAATATATTGCGGTGGCTAGTTGTTGTGCTCAAATTCTTTGGATGAAACAAACATTATGTGATTTTGGTTTAAAATTTGATAATGTGCCAATATTTTGTGATAATACTAGTGCTATAAATTTGACCAAAAATCCTATACATCATTCAAGAACTAAGCATATTGATATTAGACATCACTTTATTAGAGAGCATGTGCAAAATGGTCATATTATACTTGATTTTGTGAGCTCTAATAATCAATTAGCGGATATCTTTACCAAGCCTTTGAATGAAGAGAATTTTTGCAAAAATAGGCTCGAGCTTGGTATTATTCGTTGTGATACCTCTTAAATTTATATTTTGCTTTAAGGCATATTGTTAGGGGGAGCTATTTTGTAAAGTATGTAATCATGTTTGTAGAGGAAATATTCTTATATTTAGGAGAGCTTTTATATCTTATTTCTTTTGATGATTACAAAGGGGGAGAAGTTCTTTGAAAAAAATTTATTTGAAATGTTTGTAACATATCTTATTATTATTGATTATTGATGCATTAATTTAGGGGGAGAATTAATGTGAACTTTATGATGATACTATTGGACACATGTACTCAATTGATTCTTATGGTTTTTCAAGTGATTGTTTTTAGTTGTTTGTCATCATCAAAAAGGGGAGATTGTTGGCTTTTTGGCCCTATCTCAAATTAATTAATTAATATTTTGATGATAACAAACTTGATATTATTTACTAATAATTTTGATGTTTTAAGATGTCAACAGTGTAGTGCTCGAAACAAGGATTCCAACGCAATTTGAATTACTCAAATCGGAGTTGAAACGAAGAAGTTATTGACAAAACAAGTTTGAACGAGAAAATCCCGAGACGGTGACGTGGCAGCTGAGTGTACATCGTGGGCTATTTAGAAGTTGACATGTGGAGTTTTGGATGAGTGAAAAATGACAAATGGTG

mRNA sequence

CTCGTGTCTCTTGTGCATGTCTTGATCTCGGGCCTCAACTTTGACAGCTCAATGAAGCGATGAATCAAAATGGCCCTAGCTCGCACTACTCATCCATTTCCTCTTCTCTTTCGATTATCCAGCGAAACTCTGGCGATCTCTGCATTTCCCTCGATTAGTTGCATTTGATTGATCGATCGAGACTATGTATCAGAGAATTGATACATGAACGGTAAGATCTAACTCCTTTCTCCTTCTTTTCGAATTCAATCTTTCTCTATCAGTTTTGATCTATCTTACTAACTCGCTTTGATTCTTGTGCGAGATTCACAACAAGAGTAAAACACACACAAAAGATTGAGAGTAAGAGAGTAAGAGAAAGTATACACCAAGGTTTTGCAGTTCAGCAACTCAGGCTTACTCCATAGGAAGAACACAAATTTGCTAGGATTGAAGCAGAAATGGCAAGCTTTATGAGTTCAGTGGAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGCGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATTACACAAGGCTTTGAAGGGAAGATCAAGTAGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTTCAGTGGTAATTCTAACAAAAGTTCTAAGAAGTCCAGCATGAGTGATGATGAATGAGAGGAAATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGTCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTTTCAGGCAAAGAGCATTTCAAATCGGTTGTACCTGAAGGATCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTCAGATCATCTTAGTGTTCTCAATGGTGTTGTCTCTGAGCTGGAGGTAATTGGTGTGAAGATAGAGGACGAGGATAAGACACTAAGGCTTATCTTGTCACTTCCCCCTTCTTATGAACATATGAAACCAATTTTGATGTACGGAAAAGAGTCTTTAAATTTTGCAGAGGCTACTAATAAACTTCTATCGGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACTCATAAGAGGATTCAACACTAGTAGTTGGCAATTGGAAGAAGAAGAGAAACTTTGTGCAAAAGAGAAGTTGCTGGGAATGTGGACAACCTGGTCACATGAGAAACAATTGTCCTAATAGAGCAAGTTCGTCAAAGGGCTCTAGTTCGGATGCTGACGTGGTCTCTCTCGTCCGGGGATCTGGTGATGCCCTCTGAAGAAAGAAAGAAATCATCCTCATGGTATGTCCGCTTTGCCATGGTAGAGGATGTGATGTCAGCGGTTCCACAAGTTGGTATACAGGCATTGGCTTGGCGGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATGGCTGAAGGACTTCCAGATGTCAACAGTGTAGTGCTCGAAACAAGGATTCCAACGCAATTTGAATTACTCAAATCGGAGTTGAAACGAAGAAGTTATTGACAAAACAAGTTTGAACGAGAAAATCCCGAGACGGTGACGTGGCAGCTGAGTGTACATCGTGGGCTATTTAGAAGTTGACATGTGGAGTTTTGGATGAGTGAAAAATGACAAATGGTG

Coding sequence (CDS)

ATGGATTTGAGAGCTGCAAGTGCCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAACAGTCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTTTCAGGCAAAGAGCATTTCAAATCGGTTGTACCTGAAGGATCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTCAGATCATCTTAGTGTTCTCAATGGTGTTGTCTCTGAGCTGGAGGTAATTGGTGTGAAGATAGAGGACGAGGATAAGACACTAAGGCTTATCTTGTCACTTCCCCCTTCTTATGAACATATGAAACCAATTTTGATGTACGGAAAAGAGTCTTTAAATTTTGCAGAGGCTACTAATAAACTTCTATCGGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACTCATAAGAGGATTCAACACTAG

Protein sequence

MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAEATNKLLSEERRLKLDERTHKRIQH

Homology

[Close]

BLAST of Sed0002959 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 109/138 (78.99%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           MDLRAASAIR +LAKN+LANVH IST KELWEKLEA++QAK ISNRLYLK+QF+TL+MEE
Sbjct: 377 MDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKEQFHTLQMEE 436

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           G KISDHLS LN ++ ELE I VKI+DEDK LRLILSLP SYEHMKPILMYGK++LNFAE
Sbjct: 437 GMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPXSYEHMKPILMYGKDTLNFAE 496

Query: 121 ATNKLLSEERRLKLDERT 139
            T+KLLSEERRLK + RT
Sbjct: 497 VTSKLLSEERRLKSEGRT 514

[Close]

BLAST of Sed0002959 vs. NCBI nr
Match: KAF5758504.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-49
Identity = 104/132 (78.79%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +DLRAASAIRL LAKNVLANVHGIST K+LWEKLE ++Q K ISNRLYLK+QF+TLRM+ 
Sbjct: 66  LDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGISNRLYLKEQFHTLRMDG 125

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
            TKISDHLSVLN +VSELE IGVK+EDEDK LRLILSL  SYEHMKPILMYGKE+L +A+
Sbjct: 126 DTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYAD 185

Query: 121 ATNKLLSEERRL 133
            T KLLSEE+RL
Sbjct: 186 VTEKLLSEEKRL 197

[Close]

BLAST of Sed0002959 vs. NCBI nr
Match: KAF5765959.1 (putative RNA-directed DNA polymerase [Helianthus annuus])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 103/132 (78.03%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +DLRAASAIRL LAKNVLANVHGIST K+LWEKLE ++Q K I NRLYLK+QF+TLRM+ 
Sbjct: 66  LDLRAASAIRLCLAKNVLANVHGISTAKDLWEKLEQLYQGKGIPNRLYLKEQFHTLRMDG 125

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
            TKISDHLSVLN +VSELE IGVK+EDEDK LRLILSL  SYEHMKPILMYGKE+L +A+
Sbjct: 126 DTKISDHLSVLNNIVSELEAIGVKVEDEDKALRLILSLTSSYEHMKPILMYGKETLKYAD 185

Query: 121 ATNKLLSEERRL 133
            T KLLSEE+RL
Sbjct: 186 VTEKLLSEEKRL 197

[Close]

BLAST of Sed0002959 vs. NCBI nr
Match: PON56879.1 (hypothetical protein TorRG33x02_294980 [Trema orientale])

HSP 1 Score: 200.7 bits (509), Expect = 8.7e-48
Identity = 100/132 (75.76%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D RAASAIR+ LAKNVLANV GI+T K+LW KLE ++QAK +SNR+YLK+QF+TLRM E
Sbjct: 9   LDERAASAIRMCLAKNVLANVLGITTAKDLWRKLEELYQAKGVSNRVYLKEQFHTLRMNE 68

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GTKISDHLSVLNG+VSELE IGVKIEDEDK LR I S+PPSYEHMKPIL++GKE++ F+E
Sbjct: 69  GTKISDHLSVLNGIVSELEAIGVKIEDEDKALRFIWSIPPSYEHMKPILVHGKETVIFSE 128

Query: 121 ATNKLLSEERRL 133
            T+KLLSEERRL
Sbjct: 129 VTSKLLSEERRL 140

[Close]

BLAST of Sed0002959 vs. NCBI nr
Match: KAF5463231.1 (hypothetical protein F2P56_019161 [Juglans regia])

HSP 1 Score: 199.1 bits (505), Expect = 2.5e-47
Identity = 99/132 (75.00%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +DLRAASAIRL LAKNVLAN+HGIST K+LWEKLE ++Q K +SNR+YLK+QF+TL M E
Sbjct: 75  LDLRAASAIRLCLAKNVLANIHGISTAKKLWEKLEELYQTKGVSNRVYLKEQFHTLHMSE 134

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GT ISDHLSVLNG+VSELE IGVKI+DED+ LRLI SLP SYEHMKPIL++GKE + F+E
Sbjct: 135 GTTISDHLSVLNGIVSELESIGVKIDDEDQALRLIWSLPSSYEHMKPILIHGKEKIIFSE 194

Query: 121 ATNKLLSEERRL 133
            T+KL SEERRL
Sbjct: 195 VTSKLFSEERRL 206

[Close]

BLAST of Sed0002959 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 57/136 (41.91%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D RAASAIRL+L+ +V+ N+    T + +W +LE+++ +K+++N+LYLK Q Y L M E
Sbjct: 55  LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GT    HL+V NG++++L  +GVKIE+EDK + L+ SLP SY+++   +++GK ++   +
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKD 174

Query: 121 ATNKLLSEERRLKLDE 137
            T+ LL  E+  K  E
Sbjct: 175 VTSALLLNEKMRKKPE 190

[Close]

BLAST of Sed0002959 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09
Identity = 35/121 (28.93%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 26  TVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEEGTKISDHLSVLNGVVSELEVIGVKI 85
           T +++ E L+A+++ KS++++L L+ +  +L++     +  H  + + ++SEL   G KI
Sbjct: 76  TARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLAAGAKI 135

Query: 86  EDEDKTLRLILSLPPSYEH-MKPILMYGKESLNFAEATNKLLSEERRLKLDER-THKRIQ 145
           E+ DK   L+++LP  Y+  +  I    +E+L  A   N+LL +E ++K D   T K++ 
Sbjct: 136 EEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQEIKIKNDHNDTSKKVM 195

[Close]

BLAST of Sed0002959 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.3e-52
Identity = 109/138 (78.99%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           MDLRAASAIR +LAKN+LANVH IST KELWEKLEA++QAK ISNRLYLK+QF+TL+MEE
Sbjct: 377 MDLRAASAIRTSLAKNILANVHRISTAKELWEKLEALYQAKGISNRLYLKEQFHTLQMEE 436

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           G KISDHLS LN ++ ELE I VKI+DEDK LRLILSLP SYEHMKPILMYGK++LNFAE
Sbjct: 437 GMKISDHLSNLNSIIFELEAIEVKIDDEDKALRLILSLPXSYEHMKPILMYGKDTLNFAE 496

Query: 121 ATNKLLSEERRLKLDERT 139
            T+KLLSEERRLK + RT
Sbjct: 497 VTSKLLSEERRLKSEGRT 514

[Close]

BLAST of Sed0002959 vs. ExPASy TrEMBL
Match: A0A2P5C765 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_294980 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.2e-48
Identity = 100/132 (75.76%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D RAASAIR+ LAKNVLANV GI+T K+LW KLE ++QAK +SNR+YLK+QF+TLRM E
Sbjct: 9   LDERAASAIRMCLAKNVLANVLGITTAKDLWRKLEELYQAKGVSNRVYLKEQFHTLRMNE 68

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GTKISDHLSVLNG+VSELE IGVKIEDEDK LR I S+PPSYEHMKPIL++GKE++ F+E
Sbjct: 69  GTKISDHLSVLNGIVSELEAIGVKIEDEDKALRFIWSIPPSYEHMKPILVHGKETVIFSE 128

Query: 121 ATNKLLSEERRL 133
            T+KLLSEERRL
Sbjct: 129 VTSKLLSEERRL 140

[Close]

BLAST of Sed0002959 vs. ExPASy TrEMBL
Match: A0A6A3BK59 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110050pilonHSYRG00143 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.0e-46
Identity = 100/136 (73.53%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEE
Sbjct: 72  LDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEKFHKLQMEE 131

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GTKISDHLS LNG+VSELE IGV+I+DEDK LRLI SLP SYEHM+ +LMYGKE++NF+E
Sbjct: 132 GTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQTVLMYGKENVNFSE 191

Query: 121 ATNKLLSEERRLKLDE 137
            T+KL+SEERRLK  E
Sbjct: 192 VTSKLISEERRLKNGE 207

[Close]

BLAST of Sed0002959 vs. ExPASy TrEMBL
Match: A0A6A3DA47 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000132pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.0e-46
Identity = 100/136 (73.53%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEE
Sbjct: 72  LDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEKFHKLQMEE 131

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GTKISDHLS LNG+VSELE IGV+I+DEDK LRLI SLP SYEHM+ +LMYGKE++NF+E
Sbjct: 132 GTKISDHLSALNGIVSELESIGVEIDDEDKALRLIWSLPSSYEHMQTVLMYGKENVNFSE 191

Query: 121 ATNKLLSEERRLKLDE 137
            T+KL+SEERRLK  E
Sbjct: 192 VTSKLISEERRLKNGE 207

[Close]

BLAST of Sed0002959 vs. ExPASy TrEMBL
Match: A0A6A3CWI3 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001713pilonHSYRG00162 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 100/136 (73.53%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MDLRAASAIRLNLAKNVLANVHGISTVKELWEKLEAMFQAKSISNRLYLKDQFYTLRMEE 60
           +D+RAAS IRL LAKNVLANV   S+ KELWEKLE M+QAKS+SNRLYLK++F+ L+MEE
Sbjct: 72  LDMRAASQIRLCLAKNVLANVARWSSTKELWEKLEEMYQAKSLSNRLYLKEKFHKLQMEE 131

Query: 61  GTKISDHLSVLNGVVSELEVIGVKIEDEDKTLRLILSLPPSYEHMKPILMYGKESLNFAE 120
           GTKISDHLS LNG+VSELE IGV I+DEDK LRLI SLP SYEHM+ +LMYGKE++NF+E
Sbjct: 132 GTKISDHLSALNGIVSELESIGVDIDDEDKALRLIWSLPSSYEHMQTVLMYGKENVNFSE 191

Query: 121 ATNKLLSEERRLKLDE 137
            T+KL+SEERRLK  E
Sbjct: 192 VTSKLISEERRLKNGE 207

The following BLAST results are available for this feature:

BLAST of Sed0002959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.3e-51	78.99	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
KAF5758504.1	2.7e-49	78.79	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
KAF5765959.1	1.0e-48	78.03	putative RNA-directed DNA polymerase [Helianthus annuus]	[more]
PON56879.1	8.7e-48	75.76	hypothetical protein TorRG33x02_294980 [Trema orientale]	[more]
KAF5463231.1	2.5e-47	75.00	hypothetical protein F2P56_019161 [Juglans regia]	[more]

BLAST of Sed0002959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-26	41.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-09	28.93	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Sed0002959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	6.3e-52	78.99	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A2P5C765	4.2e-48	75.76	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_294980 PE=4 SV...	[more]
A0A6A3BK59	1.0e-46	73.53	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3DA47	1.0e-46	73.53	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A6A3CWI3	1.8e-46	73.53	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]

BLAST of Sed0002959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..133 e-value: 1.6E-34 score: 118.6
None	No IPR available	PANTHER	PTHR34676:SF6	SUBFAMILY NOT NAMED	coord: 1..136
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002959.1	Sed0002959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0048544	recognition of pollen
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding