Sed0002943 (gene) Chayote v1

Overview


Name	Sed0002943
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Auxin-responsive family protein
Location	LG06: 15395976 .. 15396440 (+)
RNA-Seq Expression	Sed0002943
Synteny	Sed0002943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATAAACTCCCTATTGAGAAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGATCTTCATCTTATAGAAGCTTGAGGTCCAAATCCACAAGAGAAGATCTTTGGGTTTGTGAAAGCAAAATGGAAGAAGAAGATTTTGATGATGATCATCAACAGCTTGAAAAGGTGAGTGGCAATAATGTAATTTTATATGTTGGAAGCACAAGGAAGAGATATGCAATAAGTTCAAAGTTCTTGAGCCATCCTTTGTTAAGTGCTTTGATTGACAAATCAAAGGCTAAGGCAAATGAAGATTGTGATCATAGTAATAATAATAATAATAATAATAATAATAATGTCATTTCAGTGAGATGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAATATCAATTTTGATTCAAATTTTGAGGAATTGGCTGAGCTTTATGTGTTTTGA

mRNA sequence

ATGAAGAAAATAAACTCCCTATTGAGAAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGATCTTCATCTTATAGAAGCTTGAGGTCCAAATCCACAAGAGAAGATCTTTGGGTTTGTGAAAGCAAAATGGAAGAAGAAGATTTTGATGATGATCATCAACAGCTTGAAAAGGTGAGTGGCAATAATGTAATTTTATATGTTGGAATTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAATATCAATTTTGATTCAAATTTTGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Coding sequence (CDS)

ATGAAGAAAATAAACTCCCTATTGAGAAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGATCTTCATCTTATAGAAGCTTGAGGTCCAAATCCACAAGAGAAGATCTTTGGGTTTGTGAAAGCAAAATGGAAGAAGAAGATTTTGATGATGATCATCAACAGCTTGAAAAGGTGAGTGGCAATAATGTAATTTTATATGTTGGAATTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAATATCAATTTTGATTCAAATTTTGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Protein sequence

MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLEKVSGNNVILYVGIVLFDHLLWMLENSDPNINFDSNFEELAELYVF

Homology

[Close]

BLAST of Sed0002943 vs. NCBI nr
Match: XP_038899559.1 (auxin-responsive protein SAUR78 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 89/148 (60.14%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLEKVSG 60
           MKKIN LLRKCKSLSRQLGRSSSY SLRSKSTREDLWVC +KMEEEDF+   QQLEKVSG
Sbjct: 1   MKKINYLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCGTKMEEEDFEQQKQQLEKVSG 60

Query: 61  NNVILYVG-----------------------------------------------IVLFD 102
           N+VILYVG                                               +VLFD
Sbjct: 61  NDVILYVGSTRKRYAISSKYLSHPLLNALIDKSKSKKLLANDDDEEEDCISVRCEVVLFD 120

[Close]

BLAST of Sed0002943 vs. NCBI nr
Match: XP_022135446.1 (uncharacterized protein LOC111007398 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-29
Identity = 86/149 (57.72%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLW-VCESKM-EEEDFDDDH--QQLE 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLW +C +KM EEE+ ++DH  QQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVSGNNVILYVG--------------------------------------------IVLF 102
           KV G+NVI+YVG                                            +VLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

[Close]

BLAST of Sed0002943 vs. NCBI nr
Match: XP_023536060.1 (auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 81/152 (53.29%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQ------ 60
           M K+NSLLRKCKSLSRQLGRSSSY SLRSKSTREDLWVC+  MEE +  ++H++      
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCDRTMEEHEEREEHEEREEHEG 60

Query: 61  LEKVSGNNVILYVG---------------------------------------------I 102
            EKVSG+NVI+YVG                                             +
Sbjct: 61  FEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEV 120

[Close]

BLAST of Sed0002943 vs. NCBI nr
Match: XP_011653970.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical protein Csa_012026 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.2e-28
Identity = 87/155 (56.13%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLE-KVS 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLWVCE   +EEDF+   QQ+E KVS
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK--QEEDFE---QQIEQKVS 60

Query: 61  GNNVILYVG--------------------------------------------------- 102
           G+NVILYVG                                                   
Sbjct: 61  GSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDEECILVR 120

[Close]

BLAST of Sed0002943 vs. NCBI nr
Match: XP_008444291.1 (PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 6.0e-27
Identity = 85/157 (54.14%), Postives = 89/157 (56.69%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLEKVSG 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLWVCE   +EEDF+    Q  KVSG
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK--QEEDFEQQFDQ--KVSG 60

Query: 61  -NNVILYVG--------------------------------------------------- 102
            NNV+LYVG                                                   
Sbjct: 61  NNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGDDEDCIL 120

[Close]

BLAST of Sed0002943 vs. ExPASy TrEMBL
Match: A0A0A0L464 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.4e-36
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLE-KVS 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLWVCE   +EEDF+   QQ+E KVS
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK--QEEDFE---QQIEQKVS 60

Query: 61  GNNVILYVGIVLFDHLLWMLENSDPNINFDSNFEELAELYVF 102
           G+NVILYVGIVLFDHLLWMLENSDPNI FDSN EELAELYVF
Sbjct: 61  GSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 97

[Close]

BLAST of Sed0002943 vs. ExPASy TrEMBL
Match: A0A6J1C0S4 (uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007398 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.1e-30
Identity = 86/149 (57.72%), Postives = 95/149 (63.76%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLW-VCESKM-EEEDFDDDH--QQLE 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLW +C +KM EEE+ ++DH  QQLE
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDHQQQQLE 60

Query: 61  KVSGNNVILYVG--------------------------------------------IVLF 102
           KV G+NVI+YVG                                            +VLF
Sbjct: 61  KVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLF 120

[Close]

BLAST of Sed0002943 vs. ExPASy TrEMBL
Match: A0A1S3B9J9 (uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 85/157 (54.14%), Postives = 89/157 (56.69%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQQLEKVSG 60
           MKKINSLLRKCKSLSRQLGRSSSY SLRSKSTREDLWVCE   +EEDF+    Q  KVSG
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK--QEEDFEQQFDQ--KVSG 60

Query: 61  -NNVILYVG--------------------------------------------------- 102
            NNV+LYVG                                                   
Sbjct: 61  NNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGDDEDCIL 120

[Close]

BLAST of Sed0002943 vs. ExPASy TrEMBL
Match: B9RI47 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.4e-19
Identity = 68/131 (51.91%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDDDHQ------- 60
           MKKIN +LRKCKSLSRQLGRSSSY SLRSKSTRE+LW      + ++ D++HQ       
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELW-----GDHKEEDEEHQSTLFVGS 60

Query: 61  ---------------------QLEKVSGNNVILYV--GIVLFDHLLWMLENSDPNINFDS 102
                                Q  K      IL V   +VLFDHLLWMLEN+DPN++FDS
Sbjct: 61  TRKRYVISSKYLSHPLVNALIQKSKQRQGEEILVVKCEVVLFDHLLWMLENADPNLSFDS 120

[Close]

BLAST of Sed0002943 vs. ExPASy TrEMBL
Match: V7AKJ2 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G174700g PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 1   MKKINSLLRKCKSLSRQLGRSSSYRSLRSKSTREDLWVCESKMEEEDFDD---------- 60
           MKKIN LLRKCKSLSRQLGRSSSY SLRSKST+ED+W      E+E  +           
Sbjct: 1   MKKINLLLRKCKSLSRQLGRSSSYSSLRSKSTKEDIWGGHGMQEDEHCETIFVGSTRKRY 60

Query: 61  -------DHQQLE--------KVSGNNVILYVG--IVLFDHLLWMLENSDPNINFDSNFE 102
                  +H  L         KVS  + +L V   +VLFDHLLWMLEN+DP  + +S  E
Sbjct: 61  VISKKYLNHPLLNELINKSKPKVSDESTVLVVNCEVVLFDHLLWMLENADPKFSSES-LE 120

[Close]

BLAST of Sed0002943 vs. TAIR 10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 43/142 (30.28%), Postives = 62/142 (43.66%), Query Frame = 0


Query: 3   KINSLLRKCKSLSRQLGRSSSYRSLRSKSTRED--------------------------- 62
           ++  +LR+CKS+S QLGRS SY SLRSKS R D                           
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQSPTPSMYQTVLVGRTKK 65

Query: 63  ----------------LWVCESKMEEEDFDDDHQQLEKVSGNNVI-LYVGIVLFDHLLWM 101
                           L   + + EE+D +D         G+ +I +   +VLFDHLLWM
Sbjct: 66  PYLISKKHLKHPLLNALVEKQQRYEEDDNED---------GSCIITVKCEVVLFDHLLWM 125

The following BLAST results are available for this feature:

BLAST of Sed0002943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899559.1	1.1e-33	60.14	auxin-responsive protein SAUR78 [Benincasa hispida]	[more]
XP_022135446.1	1.7e-29	57.72	uncharacterized protein LOC111007398 [Momordica charantia]	[more]
XP_023536060.1	3.2e-28	53.29	auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]	[more]
XP_011653970.1	3.2e-28	56.13	auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical pro...	[more]
XP_008444291.1	6.0e-27	54.14	PREDICTED: uncharacterized protein LOC103487659 [Cucumis melo]	[more]

BLAST of Sed0002943 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L464	4.4e-36	86.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1	[more]
A0A6J1C0S4	8.1e-30	57.72	uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A1S3B9J9	2.9e-27	54.14	uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=...	[more]
B9RI47	6.4e-19	51.91	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1	[more]
V7AKJ2	5.5e-18	51.56	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G174700g PE=3 ...	[more]

BLAST of Sed0002943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12955.1	1.1e-05	30.28	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31374:SF195	EXPRESSED PROTEIN	coord: 56..101 coord: 3..56
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 56..101 coord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002943.1	Sed0002943.1	mRNA