Sed0002930 (gene) Chayote v1

Overview


Name	Sed0002930
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 2970934 .. 2971453 (+)
RNA-Seq Expression	Sed0002930
Synteny	Sed0002930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTCACCTATAAATACATTGCTTGCGAAGGCAAACAAAAACGTACCATTAGATTAATTGGAAAAAAAAAAGAGAGATGGAGATGAAAAAGAAGCTTGCTTTGATGGTGATGGTGGTGATGGTGGTGGTTATGGCTCAATCTGCCACCACGATCGCGGTCGTGGACGAGGCGATTCAGCTCCCGTCCCGTGGCGGAGGAAGTTATTACAAGCCGCCGCCGAGGGTGTGTCCTGTTATGGTATTGCCATGCCAGACTGACTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGAAAACATGCAAGAACAAGATCAAGATCAAGAAAATGTTTGTCATTTTTAATTACTGATGTTTCCAATGTGTGTGTTTTTTCTTCTTGTCTTTCTATGTTTTTTATGCAGAATAAAGCTTCCACTTTTGATCACTCTTTGTCATGTTTGAGTGATTATGATCATGTGCTTTTGCAAATTTGTTAATGAAGTGCTGATTTAATGGTGGTTACATTAA

mRNA sequence

TTTTTTCACCTATAAATACATTGCTTGCGAAGGCAAACAAAAACGTACCATTAGATTAATTGGAAAAAAAAAAGAGAGATGGAGATGAAAAAGAAGCTTGCTTTGATGGTGATGGTGGTGATGGTGGTGGTTATGGCTCAATCTGCCACCACGATCGCGGTCGTGGACGAGGCGATTCAGCTCCCGTCCCGTGGCGGAGGAAGTTATTACAAGCCGCCGCCGAGGGTGTGTCCTGTTATGGTATTGCCATGCCAGACTGACTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGAAAACATGCAAGAACAAGATCAAGATCAAGAAAATGTTTGTCATTTTTAATTACTGATGTTTCCAATGTGTGTGTTTTTTCTTCTTGTCTTTCTATGTTTTTTATGCAGAATAAAGCTTCCACTTTTGATCACTCTTTGTCATGTTTGAGTGATTATGATCATGTGCTTTTGCAAATTTGTTAATGAAGTGCTGATTTAATGGTGGTTACATTAA

Coding sequence (CDS)

ATGGAGATGAAAAAGAAGCTTGCTTTGATGGTGATGGTGGTGATGGTGGTGGTTATGGCTCAATCTGCCACCACGATCGCGGTCGTGGACGAGGCGATTCAGCTCCCGTCCCGTGGCGGAGGAAGTTATTACAAGCCGCCGCCGAGGGTGTGTCCTGTTATGGTATTGCCATGCCAGACTGACTCTGAGTGTTCTCCATGCTATTGTGTTAATGGCTCCTGCATTTGA

Protein sequence

MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQTDSECSPCYCVNGSCI

Homology

[Close]

BLAST of Sed0002930 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 3.4e-19
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYY--KPPPRVCPVMVLPC 60
          MEMK K+AL+ MVV++VVM +SAT  A +DE I+LP+ G  SYY   PPPRVCP+M+LPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 QTDSECSPCYCVNGSCI 76
          +TDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Sed0002930 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-08
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I+L    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEL---SGG---ENTARVCPATILPCKT 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +GSCI
Sbjct: 61 DSECSPCICNLQSGSCI 70

[Close]

BLAST of Sed0002930 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I++    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEV---SGG---ENTARVCPATILPCKT 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +GSCI
Sbjct: 61 DSECSPCICNLQSGSCI 70

[Close]

BLAST of Sed0002930 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I+L    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEL---SGG---ENTARVCPATLLPCET 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +G+C+
Sbjct: 61 DSECSPCICNVKSGACV 70

[Close]

BLAST of Sed0002930 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYY--KPPPRVCPVMVLPC 60
          MEMK K+AL+ MVV++VVM +SAT  A +DE I+LP+ G  SYY   PPPRVCP+M+LPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 QTDSECSPCYCVNGSCI 76
          +TDSECSPCYC NGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of Sed0002930 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I+L    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEL---SGG---ENTARVCPATILPCKT 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +GSCI
Sbjct: 61 DSECSPCICNLQSGSCI 70

[Close]

BLAST of Sed0002930 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-08
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I++    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEV---SGG---ENTARVCPATILPCKT 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +GSCI
Sbjct: 61 DSECSPCICNLQSGSCI 70

[Close]

BLAST of Sed0002930 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 1  MEMKKKLALMVMVVMVVVMAQSATTIAVVDEAIQLPSRGGGSYYKPPPRVCPVMVLPCQT 60
          MEMK K AL+ MVV +VVMAQS TTI   DE I+L    GG   +   RVCP  +LPC+T
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVTTI-TADETIEL---SGG---ENTARVCPATLLPCET 60

Query: 61 DSECSPCYC--VNGSCI 76
          DSECSPC C   +G+C+
Sbjct: 61 DSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:

BLAST of Sed0002930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	3.4e-19	67.53	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	6.0e-08	58.44	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	1.3e-07	57.14	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	2.3e-07	55.84	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of Sed0002930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	1.6e-19	67.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	2.9e-08	58.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	6.5e-08	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE9	1.1e-07	55.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of Sed0002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002930.1	Sed0002930.1	mRNA