Sed0002922 (gene) Chayote v1

Overview


Name	Sed0002922
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG14: 20284402 .. 20285017 (-)
RNA-Seq Expression	Sed0002922
Synteny	Sed0002922

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTATATAATTCATAATAATAATAATAATCTCCCCATTCCAAAATCAACCAAAAAAAAAAAAAGCTTGAAAAATCAGAGCCATGGCGGACATCGCAATTCTGGTAGCAGAGGAATACGAAAGAAGGATGAAAATCAATCCCAAAAAACAACAACAACAGATTGGGGATATGGGATCTGGGATTTCAATCTCTGCAACTATGAAGAAGAAATTGATGGAATTGGTGGAGTCTTCGTCGGATTTGAAATGGGCCTTTGAGCCCAAATCGCAACTTGGGCTGGCGGCCTCCACTGGACTCTTCTCTGCCTGAGAGAGATCATTATGTTAATACTCTAAATCTTTCTCATCTCTGTTTCTTCCATTTGTACATTCCAATGTTTCTTCTGCTTTCCTTTACTTTCCAAAAACAATGGTCACTTATTTTCTTTTAATTTAACCATATATATATATATTTGATTATAAAGATCATTGAGTTTATGGGTCATTTCTGATTCTGCTACGGTGGATTTGATTTTTCATGACTTTATTTTTTTAATTTAGGCGCAAGAATCAAATTTGTTTGCTTTTTTTCCCCTTCGTAACAGAGATGGAGAGATCTATCAACATTATCAGAC

mRNA sequence

GTCATTATATAATTCATAATAATAATAATAATCTCCCCATTCCAAAATCAACCAAAAAAAAAAAAAGCTTGAAAAATCAGAGCCATGGCGGACATCGCAATTCTGGTAGCAGAGGAATACGAAAGAAGGATGAAAATCAATCCCAAAAAACAACAACAACAGATTGGGGATATGGGATCTGGGATTTCAATCTCTGCAACTATGAAGAAGAAATTGATGGAATTGGTGGAGTCTTCGTCGGATTTGAAATGGGCCTTTGAGCCCAAATCGCAACTTGGGCTGGCGGCCTCCACTGGACTCTTCTCTGCCTGAGAGAGATCATTATGTTAATACTCTAAATCTTTCTCATCTCTGTTTCTTCCATTTGTACATTCCAATGTTTCTTCTGCTTTCCTTTACTTTCCAAAAACAATGGTCACTTATTTTCTTTTAATTTAACCATATATATATATATTTGATTATAAAGATCATTGAGTTTATGGGTCATTTCTGATTCTGCTACGGTGGATTTGATTTTTCATGACTTTATTTTTTTAATTTAGGCGCAAGAATCAAATTTGTTTGCTTTTTTTCCCCTTCGTAACAGAGATGGAGAGATCTATCAACATTATCAGAC

Coding sequence (CDS)

ATGGCGGACATCGCAATTCTGGTAGCAGAGGAATACGAAAGAAGGATGAAAATCAATCCCAAAAAACAACAACAACAGATTGGGGATATGGGATCTGGGATTTCAATCTCTGCAACTATGAAGAAGAAATTGATGGAATTGGTGGAGTCTTCGTCGGATTTGAAATGGGCCTTTGAGCCCAAATCGCAACTTGGGCTGGCGGCCTCCACTGGACTCTTCTCTGCCTGA

Protein sequence

MADIAILVAEEYERRMKINPKKQQQQIGDMGSGISISATMKKKLMELVESSSDLKWAFEPKSQLGLAASTGLFSA

Homology

[Close]

BLAST of Sed0002922 vs. NCBI nr
Match: XP_038882836.1 (uncharacterized protein LOC120073972 [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPK--KQQQQIGDMGSGISISAT----MKKKLMELVESS--- 60
          MADIAILVAEEYERRMK NP   +++Q++ D+ SG+SISAT      KK+ME+ + +   
Sbjct: 1  MADIAILVAEEYERRMK-NPTQVQEKQELQDLASGVSISATATSIRMKKMMEMAKQNSQI 60

Query: 61 SDLKWAFEPKSQLGLAASTGLFSA 76
          S+ KW FEPKSQ+G AASTG FSA
Sbjct: 61 SEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of Sed0002922 vs. NCBI nr
Match: KAG6604012.1 (hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034176.1 hypothetical protein SDJN02_03903, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQ--QQIGDMGSGISISATMK----KKLMELVESSSDL 60
          MADIAILVAEEYERRMK NP++ Q  Q++ D+ SG+SISAT      KK+ME+   ++++
Sbjct: 1  MADIAILVAEEYERRMK-NPRQAQETQKLEDLSSGVSISATASAIRMKKMMEIAIQNAEM 60

Query: 61 ---KWAFEPKSQLGLAASTGLFSA 76
             KW FEPKSQ+G AASTG FSA
Sbjct: 61 TEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of Sed0002922 vs. NCBI nr
Match: XP_022962826.1 (uncharacterized protein LOC111463202 [Cucurbita moschata])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQ---QIGDMGSGISISATMK--KKLMEL---VESSS 60
          MADIAILVAEEYERRMK NP+++Q+   ++ D+ SG+SISAT    KK+MEL   +   +
Sbjct: 1  MADIAILVAEEYERRMK-NPRQEQKAAAEVQDLVSGVSISATASRVKKMMELELELAQPN 60

Query: 61 DLKWAFEPKSQLGLAASTGLFSA 76
          + KW FEPKSQ+G AASTG FSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Sed0002922 vs. NCBI nr
Match: XP_023003555.1 (uncharacterized protein LOC111497122 [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQ---QIGDMGSGISISATMK--KKLMEL---VESSS 60
          MADIAILVAEEYERRMK NP+++++   ++ D+ SG+SISAT    KK+MEL   +   +
Sbjct: 1  MADIAILVAEEYERRMK-NPRQEEKAAAEVQDLVSGVSISATASRVKKMMELELELAERN 60

Query: 61 DLKWAFEPKSQLGLAASTGLFSA 76
          + KW FEPKSQ+G AASTG FSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Sed0002922 vs. NCBI nr
Match: KAG6594853.1 (hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 5.2e-12
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQ---QIGDMGSGISISATMK--KKLMEL---VESSS 60
          MADIAILVAEEYERR K NP+++Q+   ++ D+ SG+SISAT    KK+MEL   +   +
Sbjct: 1  MADIAILVAEEYERRTK-NPRQEQKAAAEVQDLVSGVSISATASRVKKMMELELELAQPN 60

Query: 61 DLKWAFEPKSQLGLAASTGLFSA 76
          + KW FEPKSQ+G AASTG FSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Sed0002922 vs. ExPASy TrEMBL
Match: A0A6J1HEA8 (uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC111463202 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQ---QIGDMGSGISISATMK--KKLMEL---VESSS 60
          MADIAILVAEEYERRMK NP+++Q+   ++ D+ SG+SISAT    KK+MEL   +   +
Sbjct: 1  MADIAILVAEEYERRMK-NPRQEQKAAAEVQDLVSGVSISATASRVKKMMELELELAQPN 60

Query: 61 DLKWAFEPKSQLGLAASTGLFSA 76
          + KW FEPKSQ+G AASTG FSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Sed0002922 vs. ExPASy TrEMBL
Match: A0A6J1KS29 (uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQ---QIGDMGSGISISATMK--KKLMEL---VESSS 60
          MADIAILVAEEYERRMK NP+++++   ++ D+ SG+SISAT    KK+MEL   +   +
Sbjct: 1  MADIAILVAEEYERRMK-NPRQEEKAAAEVQDLVSGVSISATASRVKKMMELELELAERN 60

Query: 61 DLKWAFEPKSQLGLAASTGLFSA 76
          + KW FEPKSQ+G AASTG FSA
Sbjct: 61 EFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of Sed0002922 vs. ExPASy TrEMBL
Match: A0A6J1BTY3 (uncharacterized protein LOC111005739 OS=Momordica charantia OX=3673 GN=LOC111005739 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.7e-12
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINP---KKQQQQIGDMGSGISISAT----MKKKLMELVESSSD 60
          MADIAILVAEEYERRMK NP    KQ+Q+I    SG+SISAT      K++++L + ++D
Sbjct: 1  MADIAILVAEEYERRMK-NPGLQAKQKQEIDGFASGVSISATATTGRMKQMLQLGKPNAD 60

Query: 61 LKWAFEPKSQLGLAASTGLFSA 76
           KW  EPKSQ+G AAS G FSA
Sbjct: 61 FKWVSEPKSQIGRAASAGFFSA 81

[Close]

BLAST of Sed0002922 vs. ExPASy TrEMBL
Match: A0A5A7T3Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002530 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQ----QQIGDMGSGISISAT----MKKKLMELVESS- 60
          MADIAILVAEEYERR K +P++ Q    Q++ D+GSG+SISAT      KK+ME+ + + 
Sbjct: 1  MADIAILVAEEYERRTK-HPRRDQEMVRQELQDLGSGVSISATATSITMKKMMEMAKRNN 60

Query: 61 -----SDLKWAFEPKSQLGLAASTGLFSA 76
               S+    FEPKSQ+G AASTG FSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of Sed0002922 vs. ExPASy TrEMBL
Match: A0A0A0KK75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQ----QQIGDMG-SGISISAT----MKKKLMELVE-- 60
          MADIAILVAEEYERR K NP++ Q    Q++ ++G SG+SISAT      KK+ME+ +  
Sbjct: 1  MADIAILVAEEYERRTK-NPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKH 60

Query: 61 ----SSSDLKWAFEPKSQLGLAASTGLFSA 76
                S+  W FEPKSQ+G AASTG FSA
Sbjct: 61 NYSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of Sed0002922 vs. TAIR 10
Match: AT5G65207.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 34/75 (45.33%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRMKINPKKQQQQIGDMGSGISISATMKKKLMELVESSSDLKWAFEP 60
          MADIAILVAEEYERRMK      +    +      I A M     ++   S  LK  FE 
Sbjct: 1  MADIAILVAEEYERRMKHTTVGSRSSPVEFDWWKIIPAKMTIAFDKMKIES--LKKNFEA 60

Query: 61 KSQLGLAASTGLFSA 76
          KS+  LA S G FSA
Sbjct: 61 KSEFALAISHGFFSA 73

The following BLAST results are available for this feature:

BLAST of Sed0002922 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882836.1	8.1e-13	59.52	uncharacterized protein LOC120073972 [Benincasa hispida]	[more]
KAG6604012.1	1.1e-12	59.52	hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022962826.1	1.1e-12	60.24	uncharacterized protein LOC111463202 [Cucurbita moschata]	[more]
XP_023003555.1	2.4e-12	59.04	uncharacterized protein LOC111497122 [Cucurbita maxima]	[more]
KAG6594853.1	5.2e-12	59.04	hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0002922 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002922 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEA8	5.1e-13	60.24	uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A6J1KS29	1.1e-12	59.04	uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122...	[more]
A0A6J1BTY3	5.7e-12	58.54	uncharacterized protein LOC111005739 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A5A7T3Y6	2.4e-10	53.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KK75	2.4e-10	54.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]

BLAST of Sed0002922 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65207.1	2.5e-04	45.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067	EXPRESSED PROTEIN	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002922.1	Sed0002922.1	mRNA