Sed0002904 (gene) Chayote v1

Overview


Name	Sed0002904
Type	gene
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 30
Location	LG12: 34595187 .. 34596975 (+)
RNA-Seq Expression	Sed0002904
Synteny	Sed0002904

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGAAAAAGGCAGCAGTGCTTTGGCACTTCCTCAGAGCACTCAAGAGCTTGCAATGGAGGGAATCAAGCATCTGGAGGAAACCATAGAATCGGCTTTCCAGATCCTTTACTCCATGAATGACGAGCTCTGCAATCCCACGTTATGGTCTACCACTTCAACCGCTACTTCTGGTTTAACAATTGCCAGCCCTAGTGGTCCTTCTCCACATTCCGCTAATGGAGTTGTAAACGGCGACGCGAGCTCCGAAGGCAACAGCCACCACACCGACACCAGCGGCGGCGGAGCTCTTGAGGAGGCCCGAGTTCGCTACAAGAACTCCGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTGTTTTACTCTTATTCCTATTCTCCTTCGAAGTTCATTTGGCTGTGTTTTGAATTTCGAATTTCGTTTTTATTTGGGAAAAAAATCGAGATCAAAATTCTTTATTAAGAACACGAAATCTCGGAACATTGAATTTTGTTCTCGAATTTGATTTCAGATGAATGCCTATAATTCTTCCTGATGTTAATATGTGCTTACTATTCTACAATTTTAGAAGATTACATTTGACATGGTTTTCATTTTCATTACTGCTGATTTATGTGTTGACTTACTCTATGGACTCTATGAATTTGATAGATTGCTTACAGCATTGATTTGGTGTTTCATTTATGCCGATGATGTGATTTTAATGGTGGTCTCATGTTTATTGATAGGCAAAACCGTTTGAATCGGGTTCGAGTGGCCATTCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACATCTCTCTAATCTCAGAAAGGTATTTTATGTGCCTTCAGCTTGTAAATTCAAGTCAGTAATTTAGTTTTCCTCAAAACTCTGAACACTTCCTCTCATTGAATTGGAACCAGTTAAAGTTTTTAGGCTAAGATTTTGTGAAAGAACCCGACAGTTCTGGAAATAATTTACTTGTTATTGGAGCTTCAACAACGCATGATGTATTGTTGTTTTTAGATATATCTGTAGTAAGATTTAGTTAAATATACAGTTCCATTTGTATTGTTGTATCACAGACTCACAGTATTAATCTAAAGAAAGATTTAGAAACTAAACAGACAATAGACAAAATCAAATATTAAAACTAGAGTAAAACTTGGGTACTTGCCGTACTTGAGAACAAAAATGTGCCACCCAAGTAATGCAAGTACATTAAAAAAAACATAAAAAAATGTTGATTTGACTAATGAGAAAAATGATATTATTATGAAGATGTGGCTCATTATTATCCTCACAAATCATGGGAAGTATGTACTACGTACTTATCCACCAATACCCAAGTTTTACTCTTGAAACTAATAACATTTTTTTGAAACAAGGGTAACCACGCCCGTCCCTAGACTAGGCACCGGGAGACATCGAAGGAGTAATGTCACAGCTGAGTTTCGAACCTGGGACCTTGAGGGAAGCATACTCTCAAAGCCCAAGTCTTCAACCACTGTGCCACCCCTTGGGAACGAAACTAATAACATTATGAAGGATATATTATAGATATTACAGGCAGTATGCTTTTTCCTTCTTATTTTCTATCCTTTGTTAAGGTCCTAGAATTGACATTATATTTGTTTACTTCAACCGGTTTCTTACATAACTGTGTTTGCAGGAACTTGTGGTCAAGAACTTGCATGTCAAGCTTCTGATAGATCAACTAAGAGATATCGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

mRNA sequence

ATGATGGAAGAAAAAGGCAGCAGTGCTTTGGCACTTCCTCAGAGCACTCAAGAGCTTGCAATGGAGGGAATCAAGCATCTGGAGGAAACCATAGAATCGGCTTTCCAGATCCTTTACTCCATGAATGACGAGCTCTGCAATCCCACGTTATGGTCTACCACTTCAACCGCTACTTCTGGTTTAACAATTGCCAGCCCTAGTGGTCCTTCTCCACATTCCGCTAATGGAGTTGTAAACGGCGACGCGAGCTCCGAAGGCAACAGCCACCACACCGACACCAGCGGCGGCGGAGCTCTTGAGGAGGCCCGAGTTCGCTACAAGAACTCCGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAACCGTTTGAATCGGGTTCGAGTGGCCATTCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACATCTCTCTAATCTCAGAAAGGAACTTGTGGTCAAGAACTTGCATGTCAAGCTTCTGATAGATCAACTAAGAGATATCGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

Coding sequence (CDS)

ATGATGGAAGAAAAAGGCAGCAGTGCTTTGGCACTTCCTCAGAGCACTCAAGAGCTTGCAATGGAGGGAATCAAGCATCTGGAGGAAACCATAGAATCGGCTTTCCAGATCCTTTACTCCATGAATGACGAGCTCTGCAATCCCACGTTATGGTCTACCACTTCAACCGCTACTTCTGGTTTAACAATTGCCAGCCCTAGTGGTCCTTCTCCACATTCCGCTAATGGAGTTGTAAACGGCGACGCGAGCTCCGAAGGCAACAGCCACCACACCGACACCAGCGGCGGCGGAGCTCTTGAGGAGGCCCGAGTTCGCTACAAGAACTCCGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAACCGTTTGAATCGGGTTCGAGTGGCCATTCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACATCTCTCTAATCTCAGAAAGGAACTTGTGGTCAAGAACTTGCATGTCAAGCTTCTGATAGATCAACTAAGAGATATCGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA

Protein sequence

MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGGALEEARVRYKNSVLALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLRDIVADVSTWQSPCSV

Homology

[Close]

BLAST of Sed0002904 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 3.8e-83
Identity = 173/198 (87.37%), Postives = 182/198 (91.92%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG------GGALEEARVRYKNSVL 121
           TSGLTIASPSGPS HSANGVVNGDASSE  SHHTD+SG      GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK +ESG+SGH+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLRD+VADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-81
Identity = 170/198 (85.86%), Postives = 180/198 (90.91%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLRD+VADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 9.6e-79
Identity = 165/198 (83.33%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLR++VADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 1.1e-77
Identity = 167/199 (83.92%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----T 60
           MMEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T
Sbjct: 1   MMEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTT 60

Query: 61  ATSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSV 120
           ATSGL IASP+GPS HS NGVVNGDASSE  SHHTD+S       GGALEEARVRYKNSV
Sbjct: 61  ATSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSV 120

Query: 121 LALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLI 180
           LALRAILAAIPNSQKA  +ESG+SG  SPADQSEIDKLEQHLS+LRKELVVKNLH+KLLI
Sbjct: 121 LALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLI 180

Query: 181 DQLRDIVADVSTWQSPCSV 190
           DQLRD+VADVSTWQSPCSV
Sbjct: 181 DQLRDLVADVSTWQSPCSV 197

[Close]

BLAST of Sed0002904 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-77
Identity = 161/195 (82.56%), Postives = 175/195 (89.74%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTT-STATSG 61
           ME+K +S LALPQ+TQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTT STATS 
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60

Query: 62  LTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVLALR 121
           L+IASP+GPSPHS NGVVNGDASSE  +HH DTS       GGALEEARVRY NSVLALR
Sbjct: 61  LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVLALR 120

Query: 122 AILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQLR 181
           AILAAIP+SQ AK +ESG+SGH+SPADQSEIDKLEQHL NLRKELV KNLH+KLLIDQLR
Sbjct: 121 AILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLIDQLR 180

Query: 182 DIVADVSTWQSPCSV 190
           D+VAD+STWQSPCSV
Sbjct: 181 DLVADISTWQSPCSV 195

[Close]

BLAST of Sed0002904 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43
Identity = 103/197 (52.28%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSG 60
           M++++ S+   +  +TQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++T +S 
Sbjct: 1   MLQKQVSTTTTM--TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSA 60

Query: 61  LTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG--------ALEEARVRYKNSVLA 120
            T    +G +  SA+      A+ +G SHH++++GGG         L+EA +RYKNSV +
Sbjct: 61  ATTTGSNGSALVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTS 120

Query: 121 LRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQ 180
           LRA+LAAIPNSQKAK  E   +G  SP  + EI+KLE+   +LR E+  KN+HVK LID+
Sbjct: 121 LRAVLAAIPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDK 180

Query: 181 LRDIVADVSTWQSPCSV 190
           LR+++AD+STWQSPCSV
Sbjct: 181 LRELIADISTWQSPCSV 189

[Close]

BLAST of Sed0002904 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.8e-83
Identity = 173/198 (87.37%), Postives = 182/198 (91.92%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSG------GGALEEARVRYKNSVL 121
           TSGLTIASPSGPS HSANGVVNGDASSE  SHHTD+SG      GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK +ESG+SGH+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLRD+VADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 170/198 (85.86%), Postives = 180/198 (90.91%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLRD+VADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 170/198 (85.86%), Postives = 180/198 (90.91%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ LALPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    TA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+GPS HSANGVVNGDASSE  SHHTD+S       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK +ESG+S H+SPADQSEIDKLEQHLSNLRKELVVKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLRD+VADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.7e-79
Identity = 165/198 (83.33%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLR++VADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.7e-79
Identity = 165/198 (83.33%), Postives = 177/198 (89.39%), Query Frame = 0


Query: 2   MEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS----TA 61
           MEEK ++ L+LPQ+TQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTS    T 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 62  TSGLTIASPSGPSPHSANGVVNGDASSEGNSHHTDTS------GGGALEEARVRYKNSVL 121
           TSGLTIASP+ PS HS NGVVNGDASSE  +HHTDTS       GGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 122 ALRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLID 181
           ALRAILAAIPNSQKAK  ESG+SGH+SPADQSEIDKLEQHLSNLRKEL+VKNLH+KLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 182 QLRDIVADVSTWQSPCSV 190
           QLR++VADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of Sed0002904 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-44
Identity = 103/197 (52.28%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MMEEKGSSALALPQSTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSTATSG 60
           M++++ S+   +  +TQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST++T +S 
Sbjct: 1   MLQKQVSTTTTM--TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSA 60

Query: 61  LTIASPSGPSPHSANGVVNGDASSEGNSHHTDTSGGG--------ALEEARVRYKNSVLA 120
            T    +G +  SA+      A+ +G SHH++++GGG         L+EA +RYKNSV +
Sbjct: 61  ATTTGSNGSALVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTS 120

Query: 121 LRAILAAIPNSQKAKPFESGSSGHSSPADQSEIDKLEQHLSNLRKELVVKNLHVKLLIDQ 180
           LRA+LAAIPNSQKAK  E   +G  SP  + EI+KLE+   +LR E+  KN+HVK LID+
Sbjct: 121 LRAVLAAIPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDK 180

Query: 181 LRDIVADVSTWQSPCSV 190
           LR+++AD+STWQSPCSV
Sbjct: 181 LRELIADISTWQSPCSV 189

The following BLAST results are available for this feature:

BLAST of Sed0002904 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138044.1	3.8e-83	87.37	mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634...	[more]
XP_008464424.1	2.1e-81	85.86	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]...	[more]
XP_022921424.1	9.6e-79	83.33	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_038879540.1	1.1e-77	83.92	mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]	[more]
XP_022134927.1	5.3e-77	82.56	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]

BLAST of Sed0002904 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV4	1.8e-43	52.28	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0002904 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW4	1.8e-83	87.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
A0A5A7USU3	1.0e-81	85.86	Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku...	[more]
A0A1S3CMZ7	1.0e-81	85.86	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JFZ2	4.7e-79	83.33	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E0F5	4.7e-79	83.33	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=...	[more]

BLAST of Sed0002904 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63480.1	1.3e-44	52.28	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..94
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 9..189
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 9..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002904.1	Sed0002904.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex