Sed0002902 (gene) Chayote v1

Overview


Name	Sed0002902
Type	gene
Organism	Sechium edule (Chayote v1)
Description	auxin-regulated gene involved in organ size
Location	LG03: 15847269 .. 15847789 (-)
RNA-Seq Expression	Sed0002902
Synteny	Sed0002902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACCACTCTCTCTCTCTCTCTCTCCTCACTTTCTCTCTCTTGACCGTAAAATCAAAACCTGCCCTTAAAAAAAAATTGTTTTTTTTTTTTTGTGGGTGTTTTGTTGGGGATTTAAAGTCGACGACTTTACCTACGATATGCAATTGGGCGACGTCAAAATTGAGCTTGCGGCGGCGGTGACGGCGGCGGAGTTTTGTGGTGATGGCGTTTTTTAGCTTCAGATCGGTGGCAATGTTGATGGTTGTGGCGGTGGTTCTTTTGGTATCGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGCGCTACTCTTGTTTATTCCGGTGCTGATTATGTCGTTTCTTGTGTTCTTGGCCCTGTCGCCGTCGCAGGTTCCGCCGGAGGACCACCTTGTCGCCGCTGCCGACGATTCGGCGTAATTTTTTTCTTCTTCTCTTTGTTCAATGTATCATGGAAATTTTTGTAGTGTAGTTAATATTTTTCGGTTGGTAATAATCAATTTGTTTTTTTTTCATCATGAA

mRNA sequence

CCCACCACTCTCTCTCTCTCTCTCTCCTCACTTTCTCTCTCTTGACCGTAAAATCAAAACCTGCCCTTAAAAAAAAATTGTTTTTTTTTTTTTGTGGGTGTTTTGTTGGGGATTTAAAGTCGACGACTTTACCTACGATATGCAATTGGGCGACGTCAAAATTGAGCTTGCGGCGGCGGTGACGGCGGCGGAGTTTTGTGGTGATGGCGTTTTTTAGCTTCAGATCGGTGGCAATGTTGATGGTTGTGGCGGTGGTTCTTTTGGTATCGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGCGCTACTCTTGTTTATTCCGGTGCTGATTATGTCGTTTCTTGTGTTCTTGGCCCTGTCGCCGTCGCAGGTTCCGCCGGAGGACCACCTTGTCGCCGCTGCCGACGATTCGGCGTAATTTTTTTCTTCTTCTCTTTGTTCAATGTATCATGGAAATTTTTGTAGTGTAGTTAATATTTTTCGGTTGGTAATAATCAATTTGTTTTTTTTTCATCATGAA

Coding sequence (CDS)

ATGGCGTTTTTTAGCTTCAGATCGGTGGCAATGTTGATGGTTGTGGCGGTGGTTCTTTTGGTATCGCCGCTTGTGCTGCCGCCGTTGCCGCCGCCGCCGGCGCTACTCTTGTTTATTCCGGTGCTGATTATGTCGTTTCTTGTGTTCTTGGCCCTGTCGCCGTCGCAGGTTCCGCCGGAGGACCACCTTGTCGCCGCTGCCGACGATTCGGCGTAA

Protein sequence

MAFFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDHLVAAADDSA

Homology

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BLAST of Sed0002902 vs. NCBI nr
Match: KAG6603314.1 (hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 5.3e-14
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 2  AFFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPED 61
          AFFS RSVAML+VVA  LL+ PLVLPPLPPPP LLLF+PVLIM FL+FLALSPS+VP E+
Sbjct: 4  AFFSLRSVAMLIVVAASLLILPLVLPPLPPPPVLLLFVPVLIMFFLLFLALSPSEVPAEE 63

Query: 62 HLVAA 67
          H V A
Sbjct: 64 HRVGA 68

[Close]

BLAST of Sed0002902 vs. NCBI nr
Match: KAA0025988.1 (hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11 MLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDH 63
          ML+V+AV LL+ PLVLPPLPPPP LLLF+PVLIMS L+FLALSPS+ P E H
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGH 52

[Close]

BLAST of Sed0002902 vs. NCBI nr
Match: TYK04223.1 (hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11 MLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDH 63
          ML+V+AV LL+ PLVLPPLPPPP LLLF+PVLIMS L+FLALSPS+ P E H
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGH 52

[Close]

BLAST of Sed0002902 vs. NCBI nr
Match: KAG8648991.1 (hypothetical protein MANES_08G058601v8 [Manihot esculenta])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 4  FSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDHL 63
          FS RS+ +++V    LLV PLVLPPLPPPP  LLF+PVLIMS L+FLAL+PS VP  D +
Sbjct: 8  FSLRSLTVMVVFTFFLLVLPLVLPPLPPPPLFLLFLPVLIMSALIFLALTPSNVPDTDSI 67

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BLAST of Sed0002902 vs. NCBI nr
Match: KAG5242543.1 (hypothetical protein IMY05_006G0027200 [Salix suchowensis])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 4  FSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVP 59
          FS RSV  L+ +AV+L++ PL+LPPLPPPP++L+F+PVLIMSFLV LA S SQ+P
Sbjct: 15 FSLRSVVFLVFLAVLLVLLPLMLPPLPPPPSILMFLPVLIMSFLVLLAFSSSQIP 69

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BLAST of Sed0002902 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-06
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 7  RSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVP 59
          RSVA+L+ ++++LL+ P  LPPLPPPPA LL +P+L+M  L+FLA SPS  P
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEP 79

[Close]

BLAST of Sed0002902 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 3   FFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPS 56
           +FS  S+ +L+ +   LL+ PLVLPPLPPPP +LL +P+ IM  L+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of Sed0002902 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 3   FFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPS 56
           +FS  S+ +L+ +   LL+ PLVLPPLPPPP +LL +P+ IM  LV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Sed0002902 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-04
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 2   AFFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPS 56
           ++FS  S+ +L+ +   LL+ PL+LPPLPPPP +LL IP+ IM  L+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of Sed0002902 vs. ExPASy TrEMBL
Match: A0A0A0L0Y7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.8e-14
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 3  FFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDH 62
          FFS RSVAML+VVAV LL+ PLVLPPLPPPP LLLF+PVLIMS L+FLALSPS+VP E+H
Sbjct: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVPAEEH 64

[Close]

BLAST of Sed0002902 vs. ExPASy TrEMBL
Match: A0A5D3BWW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00300 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11 MLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDH 63
          ML+V+AV LL+ PLVLPPLPPPP LLLF+PVLIMS L+FLALSPS+ P E H
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGH 52

[Close]

BLAST of Sed0002902 vs. ExPASy TrEMBL
Match: A0A5A7SII5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003090 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11 MLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVPPEDH 63
          ML+V+AV LL+ PLVLPPLPPPP LLLF+PVLIMS L+FLALSPS+ P E H
Sbjct: 1  MLIVLAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEAPAEGH 52

[Close]

BLAST of Sed0002902 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 3   FFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVP 59
           FFS R+V +++V+ V LLV P+VLPPLPPPP +LLFIP+LIM+ L+ LA SPSQ+P
Sbjct: 93  FFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPSQLP 148

[Close]

BLAST of Sed0002902 vs. ExPASy TrEMBL
Match: A0A2N9F7M5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 4  FSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVP 59
          ++ R + +++++ V LLV PLVLPPLPPPP LLLF+PVL+MS LVFLAL+PSQVP
Sbjct: 5  YTVRFITVMLLLTVSLLVLPLVLPPLPPPPLLLLFVPVLMMSLLVFLALTPSQVP 59

[Close]

BLAST of Sed0002902 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-08
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 7  RSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPSQVP 59
          RSVA+L+ ++++LL+ P  LPPLPPPPA LL +P+L+M  L+FLA SPS  P
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEP 79

[Close]

BLAST of Sed0002902 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 3   FFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPS 56
           +FS  S+ +L+ +   LL+ PLVLPPLPPPP +LL +P+ IM  LV LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of Sed0002902 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 45.1 bits (105), Expect = 2.8e-05
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 2   AFFSFRSVAMLMVVAVVLLVSPLVLPPLPPPPALLLFIPVLIMSFLVFLALSPS 56
           ++FS  S+ +L+ +   LL+ PL+LPPLPPPP +LL IP+ IM  L+ LA  PS
Sbjct: 69  SYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

The following BLAST results are available for this feature:

BLAST of Sed0002902 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603314.1	5.3e-14	76.92	hypothetical protein SDJN03_03923, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025988.1	1.1e-08	75.00	hypothetical protein E6C27_scaffold34G003090 [Cucumis melo var. makuwa]	[more]
TYK04223.1	1.1e-08	75.00	hypothetical protein E5676_scaffold24967G00300 [Cucumis melo var. makuwa]	[more]
KAG8648991.1	1.3e-07	63.33	hypothetical protein MANES_08G058601v8 [Manihot esculenta]	[more]
KAG5242543.1	2.8e-07	65.45	hypothetical protein IMY05_006G0027200 [Salix suchowensis]	[more]

BLAST of Sed0002902 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWS1	1.1e-06	57.69	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1	[more]
C7SFP6	2.3e-04	50.94	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q6NMD6	3.0e-04	52.83	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q8RXL7	4.0e-04	50.00	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]

BLAST of Sed0002902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7	9.8e-14	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G432970 PE=4 SV=1	[more]
A0A5D3BWW3	5.5e-09	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SII5	5.5e-09	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5B7AL58	1.0e-07	64.29	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276...	[more]
A0A2N9F7M5	1.4e-07	65.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10977 PE=4 SV=1	[more]

BLAST of Sed0002902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41230.1	7.9e-08	57.69	unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact...	[more]
AT3G59900.1	2.2e-05	52.83	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	2.8e-05	50.00	ARGOS-like	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 2..61
None	No IPR available	PANTHER	PTHR38928:SF8	ARGOS7	coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002902.1	Sed0002902.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046622	positive regulation of organ growth
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus