Sed0002824 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCCAATCTCTCTTTTTCTCTGTTAAAAACAATGTGTTTTGGGGTTTCCTTTTTATGAACTTGTTGTTTTGTTTGTTTGTTTAGTTTGAGAGAGAATATATAATGCAAAGTAGCATTTCAGACAAAGAAGAAGGAATATTAATGGAAGTTCAAGTGGTTGAAGTAGTTGATCAAAATATGGAGTTTTGGCCATTGCAACATCCAATGGAACCTGATCATCAAGATCACCCTGTCATTTGCCCAATGCCCAACTCCACTTCCCTTCTTCATGTAAACACTTTTCTTTTCTTCTCTTTTTATTAGATGATCTTGAGAAATATGTTCTAATTTTGTTGGTTTTTTTATTATGTTTAGCATTGTAAATTTGGTTCGAGAAGGTTCCGTTTTTTTTTAGTTTTGTCGTTAATACATTCAGTTTGTCAGTTGAACTATACTCTTTTTAGTCATAAGATTCTGGCTCTAGAGATGGTGTCTATATTTTGTCTTTAGAATTGAATTACAAACTTTGTGTCTATTTAGTGGGTAGAACCTTGAAATTTTTTGAAGTTTCAATTTTGTGTTGAATAGGTCTTTAAACTTTGCTAGTTTTTGGCATGCAATTGTTTTGTGTTATGACAATGTGATAGGTTGAATCAAACATGTTCAAATATTTTTGTGTATAAGCATTAAATTTTGTTAATTAACTCAAGAACCATAAATTTAAGTACAGTTGATTAGAACTAATTTTAAAGTGTGGAAATTTAAATAGACAAAATTTCTGAAAATTTAAGGACTTGTTAAAAATTCTCTCTTTTTCTTATATTCATGAGATATGTGCCGGTTTATCTCGTCAGCTATTTTCACCGGATATATGGCTTGATCTTACAATATTTTAATATTTTCTAAATTAGTTAGTTATGATACTTTAGATCACTAGCTCACCCCATATGGTTGGAAATCTCTTAATTAGAATGGGACTACATAGATTTTAGTGTGAGATTTTATGAACCAAATTTATAATTAACTTGAAAAGCATTTTATAGTGTAGTGGAGTTTTTGGTTCCTATCAAATGTATAGGTCTTTGTTTTAATTTGTTTTAAGCCTTTTTTTCAACCTAAATTTTGATGTTTGAAATGGACAACAGGAAGGAACAATGCTTAGCAGCAAAAGGGCACCAGAAAGCTGGAGAAAAAGAACAGAAGGGTCAAGAGAAGTAAAAGCATCGACCGAGACGGCGGTGAGGTTGGTGCGAAAGCGGCACCACCACACGCTCAGCCGTACCGACCACCCGATAGTGGCAATGTCGCCGCTCCCTCCGCTGCCAACCACCCAGAACATCCCTATCTTCCAAATACTTCAGCAGTTGGATAAATTTGAGTCTTCATAATGACACAAAATGCTCAAGAGATACAAGGTTAACTTACGGAGGGAAGCCACACCAAATGAGATATAATGCAAATATATTTTGTTCAATGTTTAGTTTTTTTTTTTTTTTTTCCTTTCTTTTTCATATGTAAGTGAAGTGTTGAGAGATATTGGTGTGAATTAAAAGAAATATTTTGTTTTGCCTTTTGTTATTTGGTAAAGTTAAAGTATTTCCCTTGTGGACTCCAATAGTTAAAGTGAAGCATGGGCCTTTGGTATGAAAGAAAAAGTAAAATTTACTTGGAAGGAAGTGTTGATGGGACTTGGGAGATATGGAGTCTAATTAAATAATGCA ATCCAATCTCTCTTTTTCTCTGTTAAAAACAATGTGTTTTGGGGTTTCCTTTTTATGAACTTGTTGTTTTGTTTGTTTGTTTAGTTTGAGAGAGAATATATAATGCAAAGTAGCATTTCAGACAAAGAAGAAGGAATATTAATGGAAGTTCAAGTGGTTGAAGTAGTTGATCAAAATATGGAGTTTTGGCCATTGCAACATCCAATGGAACCTGATCATCAAGATCACCCTGTCATTTGCCCAATGCCCAACTCCACTTCCCTTCTTCATGAAGGAACAATGCTTAGCAGCAAAAGGGCACCAGAAAGCTGGAGAAAAAGAACAGAAGGGTCAAGAGAAGTAAAAGCATCGACCGAGACGGCGGTGAGGTTGGTGCGAAAGCGGCACCACCACACGCTCAGCCGTACCGACCACCCGATAGTGGCAATGTCGCCGCTCCCTCCGCTGCCAACCACCCAGAACATCCCTATCTTCCAAATACTTCAGCAGTTGGATAAATTTGAGTCTTCATAATGACACAAAATGCTCAAGAGATACAAGGTTAACTTACGGAGGGAAGCCACACCAAATGAGATATAATGCAAATATATTTTGTTCAATGTTTAGTTTTTTTTTTTTTTTTTCCTTTCTTTTTCATATGTAAGTGAAGTGTTGAGAGATATTGGTGTGAATTAAAAGAAATATTTTGTTTTGCCTTTTGTTATTTGGTAAAGTTAAAGTATTTCCCTTGTGGACTCCAATAGTTAAAGTGAAGCATGGGCCTTTGGTATGAAAGAAAAAGTAAAATTTACTTGGAAGGAAGTGTTGATGGGACTTGGGAGATATGGAGTCTAATTAAATAATGCA ATGCAAAGTAGCATTTCAGACAAAGAAGAAGGAATATTAATGGAAGTTCAAGTGGTTGAAGTAGTTGATCAAAATATGGAGTTTTGGCCATTGCAACATCCAATGGAACCTGATCATCAAGATCACCCTGTCATTTGCCCAATGCCCAACTCCACTTCCCTTCTTCATGAAGGAACAATGCTTAGCAGCAAAAGGGCACCAGAAAGCTGGAGAAAAAGAACAGAAGGGTCAAGAGAAGTAAAAGCATCGACCGAGACGGCGGTGAGGTTGGTGCGAAAGCGGCACCACCACACGCTCAGCCGTACCGACCACCCGATAGTGGCAATGTCGCCGCTCCCTCCGCTGCCAACCACCCAGAACATCCCTATCTTCCAAATACTTCAGCAGTTGGATAAATTTGAGTCTTCATAA MQSSISDKEEGILMEVQVVEVVDQNMEFWPLQHPMEPDHQDHPVICPMPNSTSLLHEGTMLSSKRAPESWRKRTEGSREVKASTETAVRLVRKRHHHTLSRTDHPIVAMSPLPPLPTTQNIPIFQILQQLDKFESS Homology
BLAST of Sed0002824 vs. NCBI nr
Match: KAG7030551.1 (hypothetical protein SDJN02_04588, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 187.6 bits (475), Expect = 7.2e-44 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Sed0002824 vs. NCBI nr
Match: XP_022942644.1 (uncharacterized protein LOC111447618 [Cucurbita moschata] >XP_022984750.1 uncharacterized protein LOC111482932 [Cucurbita maxima] >KAG6599867.1 hypothetical protein SDJN03_05100, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 187.6 bits (475), Expect = 7.2e-44 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Sed0002824 vs. NCBI nr
Match: XP_023551192.1 (uncharacterized protein LOC111808825 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 185.7 bits (470), Expect = 2.7e-43 Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 0
BLAST of Sed0002824 vs. NCBI nr
Match: XP_022156065.1 (uncharacterized protein LOC111023031 [Momordica charantia]) HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36 Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 0
BLAST of Sed0002824 vs. NCBI nr
Match: XP_004140415.1 (uncharacterized protein LOC101204044 [Cucumis sativus] >KGN50779.1 hypothetical protein Csa_004700 [Cucumis sativus]) HSP 1 Score: 151.8 bits (382), Expect = 4.4e-33 Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of Sed0002824 vs. ExPASy TrEMBL
Match: A0A6J1J9G4 (uncharacterized protein LOC111482932 OS=Cucurbita maxima OX=3661 GN=LOC111482932 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.5e-44 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Sed0002824 vs. ExPASy TrEMBL
Match: A0A6J1FRX2 (uncharacterized protein LOC111447618 OS=Cucurbita moschata OX=3662 GN=LOC111447618 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 3.5e-44 Identity = 99/140 (70.71%), Postives = 112/140 (80.00%), Query Frame = 0
BLAST of Sed0002824 vs. ExPASy TrEMBL
Match: A0A6J1DP94 (uncharacterized protein LOC111023031 OS=Momordica charantia OX=3673 GN=LOC111023031 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 5.4e-37 Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 0
BLAST of Sed0002824 vs. ExPASy TrEMBL
Match: A0A0A0KPE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G258200 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 2.1e-33 Identity = 83/122 (68.03%), Postives = 91/122 (74.59%), Query Frame = 0
BLAST of Sed0002824 vs. ExPASy TrEMBL
Match: A0A5A7SM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00230 PE=4 SV=1) HSP 1 Score: 147.9 bits (372), Expect = 3.1e-32 Identity = 80/122 (65.57%), Postives = 90/122 (73.77%), Query Frame = 0
BLAST of Sed0002824 vs. TAIR 10
Match: AT2G01913.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08 Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of Sed0002824 vs. TAIR 10
Match: AT2G35585.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04 Identity = 19/49 (38.78%), Postives = 31/49 (63.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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