Sed0002820 (gene) Chayote v1

Overview


Name	Sed0002820
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	LG05: 730648 .. 732277 (+)
RNA-Seq Expression	Sed0002820
Synteny	Sed0002820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACAAGAACAAATATTTTTTTCCCTTGCAAATTACAATATTCTAACTCCAAAACTCAACTCACTGTGCACTTCTTTCCATCTCCTTCCCCACAAAAACCTCACCAATTTCATAGAACATTTTAATTCTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTCTCTCTGACTTCACTTTGGATGAGATTGAATAGAAAAACAATCCCATCAACCAGGAAAAAACTTAGTTGTTCTACCTTTTTTGGAAAACCCCAAACCAATATCCTTTCAACTTCACAAATCCAAAAAAAAAAACATCCAATCTCTAAACAAATCCAAGAAAGATAACACCTTTCTTGAATAGTCATCTCAGATCTTGTTCCCAATCTCATCAAAAACCCACCTTGTGATTTGATTTGATTTACCCTTCTTTTTTGGTTTCAATCCCAATATCTTTGGCCTATAAGAAAGAGGGAAAAAAAAAGGAAGTACAAGAAGAAGAAGAAGAAGAAACTCTTGAAGAAGCTTTCAGGTAAGCTTTTTATGGTAAAAACAAATGATGTTATGAGCAAATAGTTACATCAATTTTTTCCATTTTCAACTTATGTAATCAGATGAACATCTCAATTTGGTAGCACACTTGGGTTTTTTTTTCCCTCTTAGAAAATTTTGAAAACCTAACACATATATTTGGAGAATTCCTTTTTGTCAAGCCAAAGAATTGATTTTATTTTGTGTGTTTGAAAATCATTCAGCAAGGAATAGTCTTCAACAAACAAATTACCAAAAAGAAAGAAAAAAAAATGGATTTTTCAAATAGTAGCAGCAATAGCATCATCATCAACAACAACATGAACCACCAACAACAATTACAAACTGCAACAACCTCCAATTCCAGCAGTAGGTATGAGAATCAAAAGCGCCGCGATTGGAAGACTTTCGGGCAATACCTCAACAATCACCGCCCCCCGCTCGCTCTCTCGCGATGCAGCGGGGCTCACGTCCTCGAATTCCTCCGGTATGAAACAAAGAATTTGCGACAATTTGCTCACAATTGTGCTAGAATTGTGCTTATATTAACGAAAGTTCATTGCTTTATAGGTACCTGGATCAATTTGGAAAGACCAAAGTGCACACGGCGATCTGCCCATTCTACGGGCTGCCGAACCCTCCCGCGCCGTGTCCGTGCCCTCTACGGCAGGCGTGGGGGAGCCTCGACGCACTGGTCGGGCGGCTTCGAGCGGCTTTCGAAGAGAACGGAGGGAAGCCGGAAGCTAATCCATTTGGGGCTAGGGCAGTGAGGCTTTATCTTCGTGAGGTTCGTGATTTTCAATCAAAGGCCAGAGGAATTAGTTATGAAAAGAAAAGAAAGCGCCCACCATCTCAATTGCCCTTGCCATGATATGATCATCATGAAAAGAGCAAACTTTGAAAAAAAAAAAAAAACAAAAATCAACCAACCAACAACAGCAAAAAGAACAAATCAATCAATTGGGTATTGCTCTAAACCTTATTTAAAATCATGGGTTTTGTTTAATTTCTTATTTTATATGTTTTTTGGGAGGATTAAATAAGTTGTGGGTTTTCATTCTCTCTCTACTTCGGCTAGGGTTTGGAAAAATTGAAGCTTTTTTTTTTTTTTTTTTT

mRNA sequence

AAAAAAACAAGAACAAATATTTTTTTCCCTTGCAAATTACAATATTCTAACTCCAAAACTCAACTCACTGTGCACTTCTTTCCATCTCCTTCCCCACAAAAACCTCACCAATTTCATAGAACATTTTAATTCTCTCTTTTCTCTTTTCTCTTTTCTCTTTTCTCTCTCTCTGACTTCACTTTGGATGAGATTGAATAGAAAAACAATCCCATCAACCAGGAAAAAACTTAGTTGTTCTACCTTTTTTGGAAAACCCCAAACCAATATCCTTTCAACTTCACAAATCCAAAAAAAAAAACATCCAATCTCTAAACAAATCCAAGAAAGATAACACCTTTCTTGAATAGTCATCTCAGATCTTGTTCCCAATCTCATCAAAAACCCACCTTGTGATTTGATTTGATTTACCCTTCTTTTTTGGTTTCAATCCCAATATCTTTGGCCTATAAGAAAGAGGGAAAAAAAAAGGAAGTACAAGAAGAAGAAGAAGAAGAAACTCTTGAAGAAGCTTTCAGCAAGGAATAGTCTTCAACAAACAAATTACCAAAAAGAAAGAAAAAAAAATGGATTTTTCAAATAGTAGCAGCAATAGCATCATCATCAACAACAACATGAACCACCAACAACAATTACAAACTGCAACAACCTCCAATTCCAGCAGTAGGTATGAGAATCAAAAGCGCCGCGATTGGAAGACTTTCGGGCAATACCTCAACAATCACCGCCCCCCGCTCGCTCTCTCGCGATGCAGCGGGGCTCACGTCCTCGAATTCCTCCGGTACCTGGATCAATTTGGAAAGACCAAAGTGCACACGGCGATCTGCCCATTCTACGGGCTGCCGAACCCTCCCGCGCCGTGTCCGTGCCCTCTACGGCAGGCGTGGGGGAGCCTCGACGCACTGGTCGGGCGGCTTCGAGCGGCTTTCGAAGAGAACGGAGGGAAGCCGGAAGCTAATCCATTTGGGGCTAGGGCAGTGAGGCTTTATCTTCGTGAGGTTCGTGATTTTCAATCAAAGGCCAGAGGAATTAGTTATGAAAAGAAAAGAAAGCGCCCACCATCTCAATTGCCCTTGCCATGATATGATCATCATGAAAAGAGCAAACTTTGAAAAAAAAAAAAAAACAAAAATCAACCAACCAACAACAGCAAAAAGAACAAATCAATCAATTGGGTATTGCTCTAAACCTTATTTAAAATCATGGGTTTTGTTTAATTTCTTATTTTATATGTTTTTTGGGAGGATTAAATAAGTTGTGGGTTTTCATTCTCTCTCTACTTCGGCTAGGGTTTGGAAAAATTGAAGCTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGATTTTTCAAATAGTAGCAGCAATAGCATCATCATCAACAACAACATGAACCACCAACAACAATTACAAACTGCAACAACCTCCAATTCCAGCAGTAGGTATGAGAATCAAAAGCGCCGCGATTGGAAGACTTTCGGGCAATACCTCAACAATCACCGCCCCCCGCTCGCTCTCTCGCGATGCAGCGGGGCTCACGTCCTCGAATTCCTCCGGTACCTGGATCAATTTGGAAAGACCAAAGTGCACACGGCGATCTGCCCATTCTACGGGCTGCCGAACCCTCCCGCGCCGTGTCCGTGCCCTCTACGGCAGGCGTGGGGGAGCCTCGACGCACTGGTCGGGCGGCTTCGAGCGGCTTTCGAAGAGAACGGAGGGAAGCCGGAAGCTAATCCATTTGGGGCTAGGGCAGTGAGGCTTTATCTTCGTGAGGTTCGTGATTTTCAATCAAAGGCCAGAGGAATTAGTTATGAAAAGAAAAGAAAGCGCCCACCATCTCAATTGCCCTTGCCATGA

Protein sequence

MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPLP

Homology

[Close]

BLAST of Sed0002820 vs. NCBI nr
Match: KAG7036313.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.8 bits (813), Expect = 5.8e-83
Identity = 156/171 (91.23%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS SSSNSIIINNN N      +AT S+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSGSSSNSIIINNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPLP 172
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISY+KKRKRPPSQ PLP
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLP 171

[Close]

BLAST of Sed0002820 vs. NCBI nr
Match: XP_004152053.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothetical protein Csa_011754 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 156/170 (91.76%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS+ SS++IIINNN N     Q A TS+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPL 171
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPPSQLPL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 170

[Close]

BLAST of Sed0002820 vs. NCBI nr
Match: XP_038888358.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038888359.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 161/174 (92.53%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNN---MNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPL 60
           MDFS+SSS++IIINNN   +NH QQ Q ATTS+SSSRYENQKRRDWKTFGQYLNNHRPPL
Sbjct: 1   MDFSSSSSHNIIINNNNNSINHHQQ-QAATTSSSSSRYENQKRRDWKTFGQYLNNHRPPL 60

Query: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120
           ALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL
Sbjct: 61  ALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 120

Query: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPP-SQLPL 171
           RAAFEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPP SQLPL
Sbjct: 121 RAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSSQLPL 173

[Close]

BLAST of Sed0002820 vs. NCBI nr
Match: XP_008447415.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038043.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK20560.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.8e-82
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS+SSS++IIIN+N N     Q A TS+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPL 171
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPP+QLPL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Sed0002820 vs. NCBI nr
Match: XP_022995850.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 2.4e-81
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNN------MNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHR 60
           MDFS SSSNSI INNN      MNHQ    +AT S+SSSRYENQKRRDWKTFGQYLNNHR
Sbjct: 1   MDFSGSSSNSININNNNNNNIAMNHQ---HSATASSSSSRYENQKRRDWKTFGQYLNNHR 60

Query: 61  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALV 120
           PPLALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALV
Sbjct: 61  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALV 120

Query: 121 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPLP 172
           GRLRAAFEENGGKPEANPFGARAVRLYLREVRD QSKARGISY+KKRKRPPSQ PLP
Sbjct: 121 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLP 174

[Close]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.5e-68
Identity = 132/173 (76.30%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 16  NMNHQQQLQ------TATTSNSS------------SRYENQKRRDWKTFGQYLNNHRPPL 75
           NM+H   L       T TTS+SS            SRYENQKRRDW TFGQYL NHRPPL
Sbjct: 12  NMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPL 71

Query: 76  ALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 135
           +LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRL
Sbjct: 72  SLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRL 131

Query: 136 RAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYE-KKRKRPPSQLP 170
           RAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP
Sbjct: 132 RAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLP 184

[Close]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 9.4e-68
Identity = 126/162 (77.78%), Postives = 138/162 (85.19%), Query Frame = 0


Query: 4   SNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS 63
           SN+SS+          Q    +++ S +SSRYENQKRRDW TFGQYL NHRPPL+LSRCS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 64  GAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 123
           GAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 124 NGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPP 166
           NGGKPE NPFGARAVRLYLREVRD QSKARG+SYEKK+++ P
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-66
Identity = 115/141 (81.56%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 26  ATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTA 85
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 86  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 145
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 146 RDFQSKARGISYEKKRKRPPS 167
           R+ Q++ARGISYEKK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-66
Identity = 115/141 (81.56%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 26  ATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTA 85
           +++S S SRYE+QKRRDW TFGQYL NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHT 
Sbjct: 72  SSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTP 131

Query: 86  ICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREV 145
           +CPFYG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREV
Sbjct: 132 VCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREV 191

Query: 146 RDFQSKARGISYEKKRKRPPS 167
           R+ Q++ARGISYEKK+++ PS
Sbjct: 192 RETQARARGISYEKKKRKKPS 212

[Close]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.1e-66
Identity = 119/135 (88.15%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 33  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 92
           SRYE+QKRRDW TFGQYL NHRPPL LSRCSGAHVLEFLRYLDQFGKTKVH A CPF+G 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 93  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKA 152
           P+PPAPCPCPLRQAWGSLDALVGRLRAAFEE+GG+PEANPFGARAVRLYLREVRD Q+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 153 RGISYEKK-RKRPPS 167
           RGI+YEKK RKRPP+
Sbjct: 141 RGIAYEKKRRKRPPT 155

[Close]

BLAST of Sed0002820 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.3e-83
Identity = 156/170 (91.76%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS+ SS++IIINNN N     Q A TS+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSGSSHNIIINNNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPL 171
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPPSQLPL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPSQLPL 170

[Close]

BLAST of Sed0002820 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS+SSS++IIIN+N N     Q A TS+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPL 171
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPP+QLPL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Sed0002820 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60
           MDFS+SSS++IIIN+N N     Q A TS+SSSRYENQKRRDWKTFGQYLNNHRPPLALS
Sbjct: 1   MDFSSSSSHNIIINHNNNTINHQQPAPTSSSSSRYENQKRRDWKTFGQYLNNHRPPLALS 60

Query: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120
           RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA
Sbjct: 61  RCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAA 120

Query: 121 FEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPL 171
           FEENGGKPEANPFGARAVRLYLREVRD QSKARGISYEKKRKRPP+QLPL
Sbjct: 121 FEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPPAQLPL 170

[Close]

BLAST of Sed0002820 vs. ExPASy TrEMBL
Match: A0A6J1K523 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111491256 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 158/177 (89.27%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 1   MDFSNSSSNSIIINNN------MNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHR 60
           MDFS SSSNSI INNN      MNHQ    +AT S+SSSRYENQKRRDWKTFGQYLNNHR
Sbjct: 1   MDFSGSSSNSININNNNNNNIAMNHQ---HSATASSSSSRYENQKRRDWKTFGQYLNNHR 60

Query: 61  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALV 120
           PPLALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALV
Sbjct: 61  PPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALV 120

Query: 121 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPLP 172
           GRLRAAFEENGGKPEANPFGARAVRLYLREVRD QSKARGISY+KKRKRPPSQ PLP
Sbjct: 121 GRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYDKKRKRPPSQHPLP 174

[Close]

BLAST of Sed0002820 vs. ExPASy TrEMBL
Match: A0A6J1ETL1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437437 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 155/175 (88.57%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MDFSNSSSNSIII----NNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPP 60
           MDFS SSSNSI+I    NNN N      +AT S+SSSRYENQKRRDWKTFGQYLNNHRPP
Sbjct: 1   MDFSGSSSNSIVIINNNNNNNNAMNHQHSATASSSSSRYENQKRRDWKTFGQYLNNHRPP 60

Query: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120
           LALSRCSGAHVLEFLRYLDQFGKTKVHT ICPFYGLPNPPAPCPCPLRQAWGSLDALVGR
Sbjct: 61  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGLPNPPAPCPCPLRQAWGSLDALVGR 120

Query: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLPLP 172
           LRAAFEENGGKPEANPFGARAVRLYLREVRD QSKARGISY+KKRKRPPSQ PLP
Sbjct: 121 LRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYDKKRKRPPSQHPLP 175

[Close]

BLAST of Sed0002820 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-69
Identity = 132/173 (76.30%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 16  NMNHQQQLQ------TATTSNSS------------SRYENQKRRDWKTFGQYLNNHRPPL 75
           NM+H   L       T TTS+SS            SRYENQKRRDW TFGQYL NHRPPL
Sbjct: 12  NMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPL 71

Query: 76  ALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRL 135
           +LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+G PNPPAPC CPLRQAWGSLDAL+GRL
Sbjct: 72  SLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRL 131

Query: 136 RAAFEENGGKPEANPFGARAVRLYLREVRDFQSKARGISYE-KKRKRPPSQLP 170
           RAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE KKRKRPP  LP
Sbjct: 132 RAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLP 184

[Close]

BLAST of Sed0002820 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 257.7 bits (657), Expect = 6.7e-69
Identity = 126/162 (77.78%), Postives = 138/162 (85.19%), Query Frame = 0


Query: 4   SNSSSNSIIINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCS 63
           SN+SS+          Q    +++ S +SSRYENQKRRDW TFGQYL NHRPPL+LSRCS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 64  GAHVLEFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEE 123
           GAHVLEFLRYLDQFGKTKVHT IC FYG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 124 NGGKPEANPFGARAVRLYLREVRDFQSKARGISYEKKRKRPP 166
           NGGKPE NPFGARAVRLYLREVRD QSKARG+SYEKK+++ P
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Sed0002820 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.1 bits (640), Expect = 6.2e-67
Identity = 121/158 (76.58%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 12  IINNNMNHQQQLQTATTSNSSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFL 71
           +I++  N      T  T  SSSRYENQKRRDW TF QYL NHRPPL+L  CSGAHVLEFL
Sbjct: 3   LISHQPNKNPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFL 62

Query: 72  RYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEAN 131
           RYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG PEAN
Sbjct: 63  RYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEAN 122

Query: 132 PFGARAVRLYLREVRDFQSKARGISYEKKRKRPPSQLP 170
           PFG+RAVRL+LREVRDFQ+KARG+SYEKKRKR   Q P
Sbjct: 123 PFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQKP 160

[Close]

BLAST of Sed0002820 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-65
Identity = 121/173 (69.94%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 14  NNNMNHQQQLQTATTSN-----SSSRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVL 73
           +NN N    L T T S+     SSSRYENQKRRDW TF QYL NH PPL+L+ CSGAHVL
Sbjct: 8   HNNRNPNTSLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVL 67

Query: 74  EFLRYLDQFGKTKVHTAICPFYGLPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKP 133
           +FLRYLDQFGKTKVH   C F+GLPNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGG P
Sbjct: 68  DFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAP 127

Query: 134 EANPFGARAVRLYLREVRDFQSKARGISYEKKRKR----------PPSQLPLP 172
           E +PFG+R+VR++LREVRDFQ+K+RG+SYEKKRKR          P SQ PLP
Sbjct: 128 ETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQPQSQPPLP 180

[Close]

BLAST of Sed0002820 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-61
Identity = 105/135 (77.78%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 33  SRYENQKRRDWKTFGQYLNNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTAICPFYGL 92
           SRYE+QKRRDW TF QYL NH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH A CP++G 
Sbjct: 30  SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query: 93  PNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDFQSKA 152
             PP+PC CPL+QAWGSLDAL+GRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q+KA
Sbjct: 90  QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query: 153 RGISYE-KKRKRPPS 167
           RGI YE KKRKRPP+
Sbjct: 150 RGIPYEKKKRKRPPT 164

The following BLAST results are available for this feature:

BLAST of Sed0002820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036313.1	5.8e-83	91.23	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004152053.1	1.3e-82	91.76	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KGN57900.1 hypothe...	[more]
XP_038888358.1	1.3e-82	92.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888835...	[more]
XP_008447415.1	3.8e-82	91.18	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_022995850.1	2.4e-81	89.27	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]

BLAST of Sed0002820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	2.5e-68	76.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	9.4e-68	77.78	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	1.0e-66	81.56	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.0e-66	81.56	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2YG32	5.1e-66	88.15	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of Sed0002820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E1	6.3e-83	91.76	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 S...	[more]
A0A5D3DAV8	1.8e-82	91.18	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BGU6	1.8e-82	91.18	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1K523	1.2e-81	89.27	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ETL1	2.0e-81	88.57	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0002820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	1.8e-69	76.30	Protein of unknown function (DUF640)	[more]
AT2G31160.1	6.7e-69	77.78	Protein of unknown function (DUF640)	[more]
AT5G28490.1	6.2e-67	76.58	Protein of unknown function (DUF640)	[more]
AT3G04510.1	5.8e-65	69.94	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.7e-61	77.78	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 27..147 e-value: 7.5E-65 score: 216.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..161 score: 83.123833
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 24..169
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 24..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002820.1	Sed0002820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus