Sed0002812 (gene) Chayote v1

Overview


Name	Sed0002812
Type	gene
Organism	Sechium edule (Chayote v1)
Description	la-related protein 6A
Location	LG10: 899210 .. 905477 (+)
RNA-Seq Expression	Sed0002812
Synteny	Sed0002812

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGTGTACAAACTTATAACGTATTCATAATGTTATTGAATATGTGCTCTTATTGTCCAAAAGTCTTCTAAATTAGGGTTTCGTGTCGGGTCGGGAAAATACCCGGATTCGATCCGATTAAGGTACCGAGCGCGTAACGTATTACAGGCGCCGATCGACTACGAGGAAATGCGGGCAAAGCTTGAAATTCAAAAGACCTGAAAACAAAACATCCAAACGAAATGTCCAAATTGCCCTCACCAGAGCAGGGTCTTGGCGGCCATTGGTATAAAAGGTTCCGCGGAAGAACCCATAGAAGCAGGAGAAACGGAGGGCGTGAAGGTACTTTTGGGTTTTCACCGCCCAAGCTTTTCTCCTCCTCACCATGGCCGACGATGAGCTCCCCACCACCGCTACCGCCGCCGTCTCTTGCTCCGTCGTCGATTCCTTCCCGTCGCCTCCGCCGCGAGATCTCGTCGGATCACCTGCTAGCGATGTGCCTGAGATTCAATCATTGACATCCGAAGACGATCATGAACAGGTACACAAGGCGAATCACGATCACGATCCTGAACACATAGTTAGGGCCGATGTTCTATCGGAGGATCTGAAACGAAGGATCGTCAAGCAGGTAACTCTACCGTCTCTGACCTTGGAATTTGAACCTTGAATTTCCTTCCTTCCTGCGTTAGGTTTGGCTCGGCTTGGCTTACGATTTTTGAATTCTCTATCTGGATTGATTTGAAAATCTGTGCTCTAATACCTTTGGAACCAAAAGGTTATGGATTCTACCTATCAAGAAATTCATTAGTTATGATTTTCTTGACAATCAAATGTTGTAAGTTCATTCTTTCGTCGAGGATAGGGAAGGCGCCCTGTGTTTTAAAAAGTCCGAAAAGGCACGCCTCAGGCTAAAAAAAGCCCCAGGCTCAATGCTGGCGCCTCGCCTGTCCAGGCACGTGCCTTTTCATAAAGCCCTCGGGCGCGCAAGTCACACGTCTTGAAGACTTTTTTATTTATTTAAAATCTAAGTCAAACGGTAATGATTTACTCATTTTTATCTATTTGTTTTTACAATTTCAAATAATCAACAATTACTTCTAAGTTTTATTTAAAAAAAAAACAATTAAAACATAATAGTCAACCCTATGGGATGACTATGTAAAAAACTCCATATTGAAATAGATTAATATATATGTTTTGTGTATACATGTATGTGCCTTTAGAAAAAGCCCGTGTCTTTTGGTGCGCCTTGCGCCTTAGGCTTCGGAGGGTCAGTGCGTCTTGAGATTTTTAAAACAGTGGGTGCGCCTAAAATCTATGAACTAATATCAGGATTCTGGATTACTTTTGTAATTTATGGATTATTTGTGCATTAAAACTTCTGTCTGGAACAGGAGTTTGGATTCAAGATTGAAAATCAGTGTTCGAATCCTTTCATATTTAAATATGCATTGCTTAGTGCAAATATTATTAAGGATGCTTATGGTTTGGTTATCAACTGCAAGGGGCGTTATGGCATTAAATTGGTGGTTTGTTGCGCTAACATAAGTTTAGTCTTTTGATGCTAGGCCTGAAATGAGCATTTAGATTGGGATATTTTTGAACCAGCATAGAAGTGGTTTAGAAATCAAGAGGTCTTAAAAGATATTAACAGTTATGGGTTCAATCTATGGTGACCTCTTACTTAGGAATTAATTTCATATGGGGCTCTTTGATATTTAAATGTTGTATGATCACCCGGTATGTCTCATGACAATAGTTGATGCGTAAGTGGGCTCAGACAATCACAAAGATTAAAAAAATAGTCATAATTTTAGTTATGCATCATTTAGTTTTTCTATGACATTTAGAGTGATAAATCCTGGTCTTTATGATTACCCTAAATGTCTTCGCAGGTAGAGTACTACTTTAGCGACGAGAACTTGCCCACAGATAAGCACTTGTTGGGATTAATCAAAAAGAACAAGGAGGGTTTTGGTATGTGGCCATTCTTCAGTTTTATAGAGATTTTATTATCTCGAATACTTCTAGTCTAAACTTCCAGTGTATTGACCAAGGGGTTGAACAAGTCATGACTCATGAGAGGATTTAGTTTATTTTTAGTTTCTATCAAAATTTCAACTACAATAAGTAATAATTTACAGAATCCTTCGGAAGAATTTCCTCAAGAGCCATACTTGAACAAATTATTGGAACTATTTTTGTACTTATAATCAATCTCATTACTTTGATGTGGATTGCCTTGTGAAATTGCTATAGAGCTTTTTGATAAATTTTTTCTTAAGTTATTAGTCTATTTTGATTAGGTTTTTCTTTGAACATTGGAGTTGGAATTAATATTCAGGAAAAAGAACCCATTCTATGGAAATGCTTAAGGAAGTTATGTAGGGGCCTCCTTGATTGCTAAAGAGAGTTCCTACCCTGCATAGATTAGACGTCTAGGCCTTCCAACCCATTTTAGTGGAAATATGTGCTATTTTTTATATCCATAGCTTCTAAGGTTTTTAATTTAAAAAAAATAGGTTTGATGCTCTAACTTCAGTTTTAAAATTTTTATCAATGAATTGGCAAGGGGAGACTTTCAGATTTTAATTTTTAGTCCGTCTATTTCAGTATCAAACTGGAAGCTATTCATAAACTTATGGCATTTCACATGTGTCAGTAATTTTTTGTGTAAAAGGCTAGAACAATCTAGTGGTAAAGATGAAGCATGTAAAAATTGCTGATTCTAGCTCAAGTCCAGTGTCAATAGTTATTGTATGGCACCAGATTCTTGTGTTTGCTTCTCATATGCTCGAACACCTGTATCTTTATATATATATTTTTTATTGAATCCGTTTGGATTTTTTTTTTTGCTCTCTCTCTCTCTATATATATATAGATATATTTTATATTGTCCTCTGATTTTCCCTAATATCTTGTAGTAAGATCAATTGTACTGTTATCAATGCATAAATAAGTTGAAATACATTCTCTGTATTTGTCTAGTTCCTATAGCTATAATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGAACATTCTTTTATCACTGCTGCACTGAGGGAATCCTCTGTTCTTGTAAGACACTCCATGCTCCCTTTTCAAATGTTGCAACCAAGGCCTCTTTTTTGCATTAGGCTATGAGCACATGTTAACGTTCCTGTCAACTGCAGGTTGTAAGTCCAAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCCGAGACTAGGGATCATAAGGTACTCACTTGTGTAGTTTTGAAATCAATGTGTTGTAATCTTGGAAGCACAAAATGTTCGTGTCCTTCGATATTATTTTTAGTTTTAGTTTTAGTTTTGCACACTTCACGGACACACCATGAATACTTTATGAACATACTATTTAAAACATATGTTTCAAGTAGTCGATGACACAACAACATGATAGTGTTACTGTTGGTGGAGGCAATTGACAACAATATCCATTGAATGTTGGACTAAAATAGAAAAGGGAAATAGAATGGAAAGGAGGGTAATGAGATAAAAACTATGATATTTTGAGATTGTCAAGGATTAGGCTTATAAATTTTGTTATGGGGGCTCTTCGTAGGCATTTAAAAAATGATGAGATTTTTGTTCTTTATTGTATTTAAATGGACTCAAATAACTATGTGAGTTAAATTCAAACGGTAATTGAATTTTCATGTTCTATCTTTATTTTAATGATTTTCATAGTTAGTAAAAAAATGGATTTGATCTTTTCAAAGTATATTGTAAAAAATAATAATATAAATAACGTGTCTTCAACGTATCCGTGTCGTGTCCATCCCATGCTTCTTAGATTGTAACTTATGGTAACTTTATGACATGTTTGTGTAGTTATTTACTATTTTGGTAGAAAATCTACCAGAGGATCATTCAAGGAAGAATATCCAACAAATTTTTGAAGCAGTTGGACGGTACGCTATTCCTGTTTCCTAAACTGTGTTTCACAAAAATACTTTTCCCTTTACAATGCATGATTTATTTTATCTTATTTTTTTATTTTTAGCATAAGAAGTATCACCATTTGTGACCCACATGCGGTAGACAAATCAGGGAAAAGCAGCAAGGGTGATGTGCTCATCAGTAATAAGGTAAACTGCGCCGACTGATTGAAAGAAAATATCTGGTTATTACTTGTGCTTCCTATTTGAGCTGTGATTTTTTTAGGTATTCTCATGTGAATAACCTTTTAAACAAGCAGAAAAATACACATGACAAGATAATAGAGATAATCGAACTTTGGTGACACTGGTTATATATATATATATATATACATATATATATATATATATACATATATATATATATATATACATATATATATATATATATATATATATCTGTGACTGTTTGGGCCAGCTTGCTTGCACTTCGAACAATGTCAAGTATATCTTGTCCTCTCCTCTAATCAGAGTTTTCTGATGACTGTGGGTTATTAGGCAATTCAATTGATAGTAGGGAGAGGGATTATATAACAAGACCTACCCAGCTGTTAAGGAATTGGTCCTCTCCTCTCGAAACACTTTGTTCACAAAATACCATGCCGAAACTGTACAAACAAATCCCTACATAAACCCGTTGCTCACAGCTTCCACGCATGATCCTCGCTGGGTCCCCCACGGGTTGCTACAAACGTAAATTTTACTCGTTTGACTCCCTCTTTACTTTTCCCGTAAGTGTGAATTATATGAGGCATGGAAGTAGTTTGAGTGGGTAGATTGTACTTCTATTCGATCGTTAACAATGCAAGAAGTGTTTCTTTTGTTATTGTAAATTAATTTTTTTCTCTTTTCTGTTGTTAGTGGAGGAAAAAACTATGGTCGTTATCTTTGTTAAAAAATAAAAAGAGAAACGAACTATTTTTACTTATTTAATTTATCTTTTTCCTTGGTTACTATGTATAGTTGCATGCTCTTGTGGAGTATGAGACTTTGGAAGCTTCCGAGAAAGCTGTGAGTGATCAGATCCATGCTCTATTTACTTCAACATAATCATTTTGTCGTGTTTGATTTAACGTTGGTAGTCGTTTTCTGATGGTTCATAAGGTTGCTACTTTAAATGATGAACGAGATTGGAGAAGTGGAATGCGGGTGAAGCTTCTTAAGCACCTGGTACTGTGTAATCTTATTGTACTTTACTTATATTTCGAGTCGAGTGTATTTACAATACAGTTCTTTTAGATTAAGCATGGCCAGAGGAAACCACACTGGAGAGGACCTGATCCCGAGAAGAACAGCACTGGGCGATTAACCGATCATTCTTGTCCCGAAAAGCACAGCACTGGACATCCAACCGATCAGAATAAAAACAGCTCTGGGCGATTAACCGACCATTCTTGTCCTGAAAAGAACAGCATTGGGCGACCAACCGAACAGAACAAGAACAGCACTGGGCGATTAGCCAATCATTCTTGTCCTGAAAAGAACAGCACTGGACGACCAACTGATCAGAACAAGAACAGCTCTGGACGACCAACTGATCCCAATGGGGACGAAGAAATTCAGAACATAACTGAGCATCATGATGATGCGCCTGATGATGAGGTTAAAGTTGCTCTTGTACTTTCACTAACCTTAAGCGTGACATTTTCTATGAGATGCGATAAAGAAAGTATAAACTTTGCAAATTTTAGGAGGGTGATCATCAGCACAAGGATAATCACGGACATAGAGGTCGAAATCAAGGATGGAATCGAAGGCAAAAGTACAAGAGCGTCAATGGAATGGGTACTATGCTGATTGTGTCGTTTTATATTTCGCATTACTGACCATTTTAGCCAGCTGATCTTTTGATTTCCTCTAGGTCATGGAACTACAACCTCTGCTCATCACATTGAACTTTCAAAGCCACCTCCAGGCCCGAAAATGCCCGATGGAACTCGAGGGTTCACGATGGGGCGTGGGCGACCTGCAACCTCCAACCAAAGCTTGTAGCGAGAATTTGAATTTCGTGATGCGGGTCTGTAAAAAATTCACTCTCTAAGTTGTTTACTTTGATTGATGGGTATGGAAATGTGTCTTGTGGTAAAATGCGTCCTGTTAAGTATATGTTCGAGTAGGTTGATTAAATGTATCTTCTTCTAACCTCAAGCTTTTGTCTTAAGAAAAAAAAAGATATTCTATGGTGGTGAACTGATCAACTGGTACGGTAAGTTGAAATATGGTGATCTTGAATTATATCCAACTTTTTCGGTGATTCTTTGTCTCTCTAATTAAAGTAATGCATTTATTATGAAAAGCGTTTTTGTCATGG

mRNA sequence

TGAGTGTACAAACTTATAACGTATTCATAATGTTATTGAATATGTGCTCTTATTGTCCAAAAGTCTTCTAAATTAGGGTTTCGTGTCGGGTCGGGAAAATACCCGGATTCGATCCGATTAAGGTACCGAGCGCGTAACGTATTACAGGCGCCGATCGACTACGAGGAAATGCGGGCAAAGCTTGAAATTCAAAAGACCTGAAAACAAAACATCCAAACGAAATGTCCAAATTGCCCTCACCAGAGCAGGGTCTTGGCGGCCATTGGTATAAAAGGTTCCGCGGAAGAACCCATAGAAGCAGGAGAAACGGAGGGCGTGAAGGTACTTTTGGGTTTTCACCGCCCAAGCTTTTCTCCTCCTCACCATGGCCGACGATGAGCTCCCCACCACCGCTACCGCCGCCGTCTCTTGCTCCGTCGTCGATTCCTTCCCGTCGCCTCCGCCGCGAGATCTCGTCGGATCACCTGCTAGCGATGTGCCTGAGATTCAATCATTGACATCCGAAGACGATCATGAACAGGTACACAAGGCGAATCACGATCACGATCCTGAACACATAGTTAGGGCCGATGTTCTATCGGAGGATCTGAAACGAAGGATCGTCAAGCAGGTAGAGTACTACTTTAGCGACGAGAACTTGCCCACAGATAAGCACTTGTTGGGATTAATCAAAAAGAACAAGGAGGGTTTTGTTCCTATAGCTATAATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGAACATTCTTTTATCACTGCTGCACTGAGGGAATCCTCTGTTCTTGTTGTAAGTCCAAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCCGAGACTAGGGATCATAAGTTATTTACTATTTTGGTAGAAAATCTACCAGAGGATCATTCAAGGAAGAATATCCAACAAATTTTTGAAGCAGTTGGACGCATAAGAAGTATCACCATTTGTGACCCACATGCGGTAGACAAATCAGGGAAAAGCAGCAAGGGTGATGTGCTCATCAGTAATAAGTTGCATGCTCTTGTGGAGTATGAGACTTTGGAAGCTTCCGAGAAAGCTGTTGCTACTTTAAATGATGAACGAGATTGGAGAAGTGGAATGCGGGTGAAGCTTCTTAAGCACCTGATTAAGCATGGCCAGAGGAAACCACACTGGAGAGGACCTGATCCCGAGAAGAACAGCACTGGGCGATTAACCGATCATTCTTGTCCCGAAAAGCACAGCACTGGACATCCAACCGATCAGAATAAAAACAGCTCTGGGCGATTAACCGACCATTCTTGTCCTGAAAAGAACAGCATTGGGCGACCAACCGAACAGAACAAGAACAGCACTGGGCGATTAGCCAATCATTCTTGTCCTGAAAAGAACAGCACTGGACGACCAACTGATCAGAACAAGAACAGCTCTGGACGACCAACTGATCCCAATGGGGACGAAGAAATTCAGAACATAACTGAGCATCATGATGATGCGCCTGATGATGAGGAGGGTGATCATCAGCACAAGGATAATCACGGACATAGAGGTCGAAATCAAGGATGGAATCGAAGGCAAAAGTACAAGAGCGTCAATGGAATGGGTCATGGAACTACAACCTCTGCTCATCACATTGAACTTTCAAAGCCACCTCCAGGCCCGAAAATGCCCGATGGAACTCGAGGGTTCACGATGGGGCGTGGGCGACCTGCAACCTCCAACCAAAGCTTGTAGCGAGAATTTGAATTTCGTGATGCGGGTCTGTAAAAAATTCACTCTCTAAGTTGTTTACTTTGATTGATGGGTATGGAAATGTGTCTTGTGGTAAAATGCGTCCTGTTAAGTATATGTTCGAGTAGGTTGATTAAATGTATCTTCTTCTAACCTCAAGCTTTTGTCTTAAGAAAAAAAAAGATATTCTATGGTGGTGAACTGATCAACTGGTACGGTAAGTTGAAATATGGTGATCTTGAATTATATCCAACTTTTTCGGTGATTCTTTGTCTCTCTAATTAAAGTAATGCATTTATTATGAAAAGCGTTTTTGTCATGG

Coding sequence (CDS)

ATGGCCGACGATGAGCTCCCCACCACCGCTACCGCCGCCGTCTCTTGCTCCGTCGTCGATTCCTTCCCGTCGCCTCCGCCGCGAGATCTCGTCGGATCACCTGCTAGCGATGTGCCTGAGATTCAATCATTGACATCCGAAGACGATCATGAACAGGTACACAAGGCGAATCACGATCACGATCCTGAACACATAGTTAGGGCCGATGTTCTATCGGAGGATCTGAAACGAAGGATCGTCAAGCAGGTAGAGTACTACTTTAGCGACGAGAACTTGCCCACAGATAAGCACTTGTTGGGATTAATCAAAAAGAACAAGGAGGGTTTTGTTCCTATAGCTATAATTGCTGCCTTCAAGAGAATGAAAAAACTTACTCAAGAACATTCTTTTATCACTGCTGCACTGAGGGAATCCTCTGTTCTTGTTGTAAGTCCAAATGGGAAGAAAGTCAAGCGACTCCATCCTATTCCATTGCCCGAGACTAGGGATCATAAGTTATTTACTATTTTGGTAGAAAATCTACCAGAGGATCATTCAAGGAAGAATATCCAACAAATTTTTGAAGCAGTTGGACGCATAAGAAGTATCACCATTTGTGACCCACATGCGGTAGACAAATCAGGGAAAAGCAGCAAGGGTGATGTGCTCATCAGTAATAAGTTGCATGCTCTTGTGGAGTATGAGACTTTGGAAGCTTCCGAGAAAGCTGTTGCTACTTTAAATGATGAACGAGATTGGAGAAGTGGAATGCGGGTGAAGCTTCTTAAGCACCTGATTAAGCATGGCCAGAGGAAACCACACTGGAGAGGACCTGATCCCGAGAAGAACAGCACTGGGCGATTAACCGATCATTCTTGTCCCGAAAAGCACAGCACTGGACATCCAACCGATCAGAATAAAAACAGCTCTGGGCGATTAACCGACCATTCTTGTCCTGAAAAGAACAGCATTGGGCGACCAACCGAACAGAACAAGAACAGCACTGGGCGATTAGCCAATCATTCTTGTCCTGAAAAGAACAGCACTGGACGACCAACTGATCAGAACAAGAACAGCTCTGGACGACCAACTGATCCCAATGGGGACGAAGAAATTCAGAACATAACTGAGCATCATGATGATGCGCCTGATGATGAGGAGGGTGATCATCAGCACAAGGATAATCACGGACATAGAGGTCGAAATCAAGGATGGAATCGAAGGCAAAAGTACAAGAGCGTCAATGGAATGGGTCATGGAACTACAACCTCTGCTCATCACATTGAACTTTCAAAGCCACCTCCAGGCCCGAAAATGCCCGATGGAACTCGAGGGTTCACGATGGGGCGTGGGCGACCTGCAACCTCCAACCAAAGCTTGTAG

Protein sequence

MADDELPTTATAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHDHDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPATSNQSL

Homology

[Close]

BLAST of Sed0002812 vs. NCBI nr
Match: KAG6594473.1 (La-related protein 6A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 605.9 bits (1561), Expect = 2.8e-169
Identity = 325/453 (71.74%), Postives = 349/453 (77.04%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK+RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+AIIAAFK
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRI+SITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+GMRVK  KHL+KHGQ+K HWR  DP+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDERDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D PD+EEGDHQHKD H HRGRNQG  RRQKYK VN MGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDVPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 388

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQS 388

[Close]

BLAST of Sed0002812 vs. NCBI nr
Match: KAG7026470.1 (La-related protein 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 605.5 bits (1560), Expect = 3.7e-169
Identity = 325/453 (71.74%), Postives = 349/453 (77.04%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHGGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK+RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+AIIAAFK
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRI+SITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+GMRVK  KHL+KHGQ+K HWR  DP+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDERDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D PD+EEGDHQHKD H HRGRNQG  RRQKYK VN MGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDMPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 388

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQS 388

[Close]

BLAST of Sed0002812 vs. NCBI nr
Match: XP_023002907.1 (la-related protein 6A isoform X2 [Cucurbita maxima])

HSP 1 Score: 604.0 bits (1556), Expect = 1.1e-168
Identity = 323/453 (71.30%), Postives = 350/453 (77.26%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H+ NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+A+IAAFK
Sbjct: 61  ----HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLT++HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRIR ITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+G+RVK  KHL+KHGQ+K HWR  +P+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDERDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D PD+EEGDHQHKD H HRGRNQG  RRQKYK VNGMGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDVPDEEEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGTTTSAH 388

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRPATSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPATSNQS 388

[Close]

BLAST of Sed0002812 vs. NCBI nr
Match: XP_038882123.1 (la-related protein 6A [Benincasa hispida])

HSP 1 Score: 603.2 bits (1554), Expect = 1.8e-168
Identity = 324/452 (71.68%), Postives = 346/452 (76.55%), Query Frame = 0


Query: 1   MADDELPTTAT-AAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE PTT++ AAVS SV +S  SPPPRD VGSP+ DVPE QSL SEDDH+Q  + +HD
Sbjct: 1   MAGDEPPTTSSNAAVSSSVAESILSPPPRDPVGSPSRDVPETQSLISEDDHDQGPRESHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
           H  E  V+  VL EDLK+RIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK
Sbjct: 61  HGHEPAVKPAVLPEDLKQRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFITAALRESSVLV+S NGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFITAALRESSVLVISSNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NI++IF A GRIRSITICDPH V+K GKSSKGDVLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIKRIFGAAGRIRSITICDPHVVEKLGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDE+DWR+GMRVK LKHL KHGQRK HWRGPDP+KNSTGR+TD S P+           
Sbjct: 241 LNDEQDWRNGMRVKPLKHLSKHGQRKQHWRGPDPDKNSTGRITDQSGPD----------- 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                             KN  GR TD 
Sbjct: 301 --------------------------------------------------KNIPGRTTDQ 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
           NGDEEI N+ EHHDD PD+EEGDHQHKD HGHRGRNQG  RRQKYK VNGMGHGTTTSAH
Sbjct: 361 NGDEEIHNVNEHHDDVPDEEEGDHQHKDKHGHRGRNQGRTRRQKYKGVNGMGHGTTTSAH 391

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQ 452
           HIELSKPPPGPKMPDGTRGFTMGRGRP TSNQ
Sbjct: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPPTSNQ 391

[Close]

BLAST of Sed0002812 vs. NCBI nr
Match: XP_023518765.1 (la-related protein 6A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 598.6 bits (1542), Expect = 4.5e-167
Identity = 324/453 (71.52%), Postives = 348/453 (76.82%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H+ N D
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNQD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK+RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+AIIAAFK
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRIRSITICDP  VDKSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRSITICDPQVVDKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDE+DWR+GMRVK  KHL+KHGQ+K HWR  DP+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDEQDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D P DEEGDHQHKD HGHRGRNQG  RR+KYK VN MGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDVP-DEEGDHQHKDKHGHRGRNQGRTRRKKYKGVNAMGHGTTTSAH 387

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQS 387

[Close]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot
Match: Q94A38 (La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.6e-85
Identity = 199/447 (44.52%), Postives = 265/447 (59.28%), Query Frame = 0


Query: 19  VDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHDHD-PEHIVRAD---VLSED 78
           VDSFP     D V    S++P +     + DHE+    + D D  E+ V  D   V  ++
Sbjct: 43  VDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDE 102

Query: 79  LKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAA 138
           L ++I++QVEYYFSDENLPTDK LL  +K+NK+GFVPI+ IA F +MKKLT++H+ I +A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 139 LRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIR 198
           L+ESS LVVS + KKVKRL   PLPE RD K+FT+LVENLPEDHS +NI++IF   G I+
Sbjct: 163 LKESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 222

Query: 199 SITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRSGMRVKL 258
           S++ICDP+AV++S K  K +  I  +LHA VEYET+EA+EKA ATLN+E+DWR+G+RVKL
Sbjct: 223 SVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKL 282

Query: 259 LKHLI-KHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTDHSCPE 318
           L+    K  QR+P  R  D EK++TGR+ D +  EK                        
Sbjct: 283 LEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEK------------------------ 342

Query: 319 KNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEEIQNITEHHD 378
                                              NK +           E QN   HH 
Sbjct: 343 -----------------------------------NKKT----------REHQNHRLHHS 402

Query: 379 DAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAHH-----IELSKPPP 438
           D P D++G +  KD +G++GR  G  RRQ ++  NG+GHGT +S+ H     +E+SK PP
Sbjct: 403 DNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPP 418

Query: 439 GPKMPDGTRGFTMGRGR---PATSNQS 453
           GP+MPDGTRGFTMGRG+   P TS Q+
Sbjct: 463 GPRMPDGTRGFTMGRGKAIPPPTSTQT 418

[Close]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot
Match: O80567 (La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 6.2e-42
Identity = 126/382 (32.98%), Postives = 191/382 (50.00%), Query Frame = 0


Query: 71  LSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSF 130
           L ED  ++IV QVEYYFSD NL T  HL+  I K+ EG+VPI ++A+FK++K +   +S 
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248

Query: 131 ITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAV 190
           + A L+ S+ L VS +GKKV+R+ PI      + +   I+ ENLPEDH  +N+ +IF  V
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308

Query: 191 GRIRSITICDPH-----AVDKSGKSSKGD-VLISNKLHALVEYETLEASEKAVATLNDER 250
           G +++I  C P      A   +  ++K D  L SNK+HA VEYE +E +E+AV  L++  
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAG 368

Query: 251 DWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSG 310
           +WRSG++V+L   ++KH  ++P        K   GR            GH  D       
Sbjct: 369 NWRSGLKVRL---MLKHQTKEP--------KQGQGR---------GRKGHDADVEHEEDD 428

Query: 311 RLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEE 370
             T    P +       +Q+ + +G    H   ++   G      K +  R     G  +
Sbjct: 429 ATTSEQQPIE-------KQSDDCSGEWDTHM--QEQPIGEDQGNEKAAGQRKGRNRGRGK 488

Query: 371 IQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAHHIELS 430
            +   + H +   ++  +H H  NH H GR    +            +            
Sbjct: 489 GRGRGQPHQN--QNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGK 539

Query: 431 KPPPGPKMPDGTRGFTMGRGRP 447
           + PPGP+MPDGTRGF+MGRG+P
Sbjct: 549 QQPPGPRMPDGTRGFSMGRGKP 539

[Close]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot
Match: Q9LHL3 (La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-39
Identity = 127/394 (32.23%), Postives = 191/394 (48.48%), Query Frame = 0


Query: 69  DVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEH 128
           ++LS+DL+ +IVKQVEY F+D +L  ++ +   I K+ EG+VP++ IA+ K++K LT  H
Sbjct: 138 NLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNH 197

Query: 129 SFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFE 188
             ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IF 
Sbjct: 198 HLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFG 257

Query: 189 AVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRS 248
            VG +++I IC  H  + +    KGD L+SNK+HAL+EY+    ++KAV  LNDER+WR 
Sbjct: 258 VVGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRK 317

Query: 249 GMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTD 308
           G+RV+LL                                                     
Sbjct: 318 GLRVRLLLR--------------------------------------------------- 377

Query: 309 HSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEEIQNI 368
             C  K+ +    +  +N  G L +   P   S                   G++  +  
Sbjct: 378 --CSPKSVL----KNRRNFDGILIDDELPSYES-------------------GEDSPR-- 437

Query: 369 TEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGH----------GTTTSA 428
             H  ++  D +GD  +      +GR +G  R  +  +V G G           G  +  
Sbjct: 438 -LHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLG 449

Query: 429 HHIELSKP---PPGPKMPDGTRGFTMGRGRPATS 450
            H E S P     GP+MPDGTRGFTMGRG+P+ S
Sbjct: 498 SH-ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

[Close]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot
Match: Q05CL8 (La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-17
Identity = 62/182 (34.07%), Postives = 102/182 (56.04%), Query Frame = 0


Query: 79  IVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAALRES 138
           I KQV+++F D NL  DK L   I+K+++G+V I+++ +F +MKKLT +   I  AL+ S
Sbjct: 32  IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91

Query: 139 SVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIRSITI 198
           SV+ +   G +++R  P+     +D +  T+ VE LP++ +   I+++F   G +  I+I
Sbjct: 92  SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151

Query: 199 CDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLN---DERDWRSGMRVKLL 258
             PH   KS    KG         A VE+ET E + KA+  LN   +E   + G+  K +
Sbjct: 152 --PHY--KSTGDPKG--------FAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTV 200

[Close]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot
Match: Q28G87 (La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-15
Identity = 76/268 (28.36%), Postives = 134/268 (50.00%), Query Frame = 0


Query: 79  IVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAALRES 138
           I KQV+++F D NL  D+ L   I+K ++G++ I+++A+F +MKK+T +   I  A++ S
Sbjct: 40  IAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNS 99

Query: 139 SVLVVSPNGKKVKRLHPI-PLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIRSIT 198
           SV+ ++ +G K++R  P+   P+  D +  T+ VE LP++ +   I+++F   G +  ++
Sbjct: 100 SVVEINLSGTKIRRRFPLGEKPQDVDSR--TVYVELLPKNVTHSWIERVFGKYGMVVYVS 159

Query: 199 ICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLN---DERDWRSGMRVKL 258
           I            S GD     K  A +E+ET E + KA+  LN   +E   ++GM  K 
Sbjct: 160 I--------PRYKSTGD----PKGFAFIEFETQEQAAKAIEVLNNPPEEAPRKAGMFPKT 219

Query: 259 LKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTDHSCPEK 318
           +K+  KH         P  E      +T+HS  E    G  T++ K    +    S   K
Sbjct: 220 VKN--KH--------LPPVE------VTEHSITE----GCGTEEKKKKKKK---KSKARK 270

Query: 319 NSIGRPTEQNKNSTGRLANHSCPEKNST 343
           +S+ +  E  K     + +   P++  T
Sbjct: 280 DSVEKAEEDTKEQDMDIISEGVPKRRKT 270

[Close]

BLAST of Sed0002812 vs. ExPASy TrEMBL
Match: A0A6J1KKW8 (la-related protein 6A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 5.2e-169
Identity = 323/453 (71.30%), Postives = 350/453 (77.26%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H+ NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+A+IAAFK
Sbjct: 61  ----HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLT++HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRIR ITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+G+RVK  KHL+KHGQ+K HWR  +P+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDERDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D PD+EEGDHQHKD H HRGRNQG  RRQKYK VNGMGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDVPDEEEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGTTTSAH 388

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRPATSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPATSNQS 388

[Close]

BLAST of Sed0002812 vs. ExPASy TrEMBL
Match: A0A6J1KMM2 (la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=4 SV=1)

HSP 1 Score: 597.8 bits (1540), Expect = 3.7e-167
Identity = 323/458 (70.52%), Postives = 350/458 (76.42%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PSP  +D VGSP+ DVPEIQSLTSEDDHEQ H+ NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSPLTQDPVGSPSHDVPEIQSLTSEDDHEQGHEGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+A+IAAFK
Sbjct: 61  ----HTVRAAVLSEDLKHRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVALIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLT++HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTKDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRIR ITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIRRITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+G+RVK  KHL+KHGQ+K HWR  +P+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDERDWRNGVRVKPFKHLVKHGQKKQHWRLSNPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDE-----EGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGT 420
             DEEIQNITEHH+D PD+E     EGDHQHKD H HRGRNQG  RRQKYK VNGMGHGT
Sbjct: 361 --DEEIQNITEHHEDVPDEEVNSALEGDHQHKDKHEHRGRNQGRTRRQKYKGVNGMGHGT 393

Query: 421 TTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           TTSAHHIEL KPPPGPKMPDGTRGFTMGRGRPATSNQS
Sbjct: 421 TTSAHHIELPKPPPGPKMPDGTRGFTMGRGRPATSNQS 393

[Close]

BLAST of Sed0002812 vs. ExPASy TrEMBL
Match: A0A6J1EHU6 (la-related protein 6A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433532 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 4.9e-167
Identity = 321/453 (70.86%), Postives = 347/453 (76.60%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PS   +D VGSP+ DVPEIQS +SEDDHEQ H  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK+RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+AIIAAFK
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRI+SITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDE+DWR+GMRVK  KHL+KHGQ+K HWR  DP+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDEQDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAH 420
             DEEIQNITEHH+D PD+EEGDHQHKD H HRGRNQG  RRQKYK VN MGHGTTTSAH
Sbjct: 361 --DEEIQNITEHHEDVPDEEEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGTTTSAH 388

Query: 421 HIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           HIEL KPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 HIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQS 388

[Close]

BLAST of Sed0002812 vs. ExPASy TrEMBL
Match: A0A6J1EEB2 (la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 PE=4 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 3.5e-165
Identity = 321/458 (70.09%), Postives = 347/458 (75.76%), Query Frame = 0


Query: 1   MADDELPTTA-TAAVSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE P++A TAAVSCSV +S PS   +D VGSP+ DVPEIQS +SEDDHEQ H  NHD
Sbjct: 1   MAGDEPPSSASTAAVSCSVGESIPSLLTQDPVGSPSHDVPEIQSFSSEDDHEQGHGGNHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
               H VRA VLSEDLK+RI+KQVEYYFS+ENLPTDK++LGLIKKNKEGFVP+AIIAAFK
Sbjct: 61  ----HAVRAAVLSEDLKQRIIKQVEYYFSNENLPTDKYMLGLIKKNKEGFVPVAIIAAFK 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDPKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GRI+SITICDPH V+KSGKSSKG VLISNKLHALVEYETLEASEKAVAT
Sbjct: 181 EENIQRIFGAAGRIKSITICDPHVVEKSGKSSKGGVLISNKLHALVEYETLEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDE+DWR+GMRVK  KHL+KHGQ+K HWR  DP+KN TGRLTDHSCP+K+STG  TDQN
Sbjct: 241 LNDEQDWRNGMRVKPFKHLVKHGQKKQHWRVSDPDKNGTGRLTDHSCPDKNSTGRTTDQN 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 V----------------------------------------------------------- 360

Query: 361 NGDEEIQNITEHHDDAPDDE-----EGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGT 420
             DEEIQNITEHH+D PD+E     EGDHQHKD H HRGRNQG  RRQKYK VN MGHGT
Sbjct: 361 --DEEIQNITEHHEDVPDEEVNFALEGDHQHKDKHRHRGRNQGRTRRQKYKGVNAMGHGT 393

Query: 421 TTSAHHIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           TTSAHHIEL KPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 TTSAHHIELPKPPPGPKMPDGTRGFTMGRGRPPTSNQS 393

[Close]

BLAST of Sed0002812 vs. ExPASy TrEMBL
Match: A0A6J1D058 (la-related protein 6A OS=Momordica charantia OX=3673 GN=LOC111015798 PE=4 SV=1)

HSP 1 Score: 573.9 bits (1478), Expect = 5.8e-160
Identity = 312/456 (68.42%), Postives = 336/456 (73.68%), Query Frame = 0


Query: 1   MADDELPTTATAA-VSCSVVDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHD 60
           MA DE PT ++AA VSC V +S PSPPP+D VGSP+ D+PEIQSLTSEDDH+  ++ NHD
Sbjct: 1   MAGDERPTPSSAAVVSCPVAESIPSPPPQDPVGSPSRDMPEIQSLTSEDDHDHGNRENHD 60

Query: 61  HDPEHIVRADVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFK 120
           H  EH VRA VL EDLK RI+KQVEYYFSDENLPTDKHL+G+IKKNKEGFVPIA+IAAF+
Sbjct: 61  HAHEHAVRAAVLLEDLKHRIIKQVEYYFSDENLPTDKHLMGIIKKNKEGFVPIALIAAFR 120

Query: 121 RMKKLTQEHSFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHS 180
           RMKKLTQ+HSFI AALRESSVLVVSPNGKKVKRLHPIPLPETRD KLFTILVENLPEDHS
Sbjct: 121 RMKKLTQDHSFIAAALRESSVLVVSPNGKKVKRLHPIPLPETRDSKLFTILVENLPEDHS 180

Query: 181 RKNIQQIFEAVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVAT 240
            +NIQ+IF A GR+RSITICDPHA DKSGKS KGDVLISNKLH LVEYET EASEKAVAT
Sbjct: 181 EENIQRIFGAAGRVRSITICDPHAADKSGKSGKGDVLISNKLHVLVEYETFEASEKAVAT 240

Query: 241 LNDERDWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQN 300
           LNDERDWR+GMRVK LKHL KHGQRK H RG DPEKNSTGR+T+                
Sbjct: 241 LNDERDWRNGMRVKPLKHLSKHGQRKQHRRGSDPEKNSTGRVTEQ--------------- 300

Query: 301 KNSSGRLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDP 360
                                                                       
Sbjct: 301 ------------------------------------------------------------ 360

Query: 361 NGDEEIQNITEHHDDAPDDEEGDHQHKDNHGHRGR--NQGWNRRQKYKSVNGMGHGTTT- 420
           NGDEEIQNI +HHDD PD+EEGDHQ KD HGHRGR  NQG  RRQKYK VNGMGHGTTT 
Sbjct: 361 NGDEEIQNIVDHHDDVPDEEEGDHQTKDKHGHRGRNQNQGRTRRQKYKGVNGMGHGTTTS 381

Query: 421 SAHHIELSKPPPGPKMPDGTRGFTMGRGRPATSNQS 453
           SAH +ELSKPPPGPKMPDGTRGFTMGRGRP TSNQS
Sbjct: 421 SAHPVELSKPPPGPKMPDGTRGFTMGRGRPPTSNQS 381

[Close]

BLAST of Sed0002812 vs. TAIR 10
Match: AT5G46250.1 (RNA-binding protein )

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-86
Identity = 199/447 (44.52%), Postives = 265/447 (59.28%), Query Frame = 0


Query: 19  VDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHDHD-PEHIVRAD---VLSED 78
           VDSFP     D V    S++P +     + DHE+    + D D  E+ V  D   V  ++
Sbjct: 43  VDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDE 102

Query: 79  LKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAA 138
           L ++I++QVEYYFSDENLPTDK LL  +K+NK+GFVPI+ IA F +MKKLT++H+ I +A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 139 LRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIR 198
           L+ESS LVVS + KKVKRL   PLPE RD K+FT+LVENLPEDHS +NI++IF   G I+
Sbjct: 163 LKESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 222

Query: 199 SITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRSGMRVKL 258
           S++ICDP+AV++S K  K +  I  +LHA VEYET+EA+EKA ATLN+E+DWR+G+RVKL
Sbjct: 223 SVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKL 282

Query: 259 LKHLI-KHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTDHSCPE 318
           L+    K  QR+P  R  D EK++TGR+ D +  EK                        
Sbjct: 283 LEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEK------------------------ 342

Query: 319 KNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEEIQNITEHHD 378
                                              NK +           E QN   HH 
Sbjct: 343 -----------------------------------NKKT----------REHQNHRLHHS 402

Query: 379 DAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAHH-----IELSKPPP 438
           D P D++G +  KD +G++GR  G  RRQ ++  NG+GHGT +S+ H     +E+SK PP
Sbjct: 403 DNPADDDGGNHQKDKNGNKGRVVGQGRRQNHQGGNGIGHGTASSSSHPNYHPVEVSKRPP 418

Query: 439 GPKMPDGTRGFTMGRGR---PATSNQS 453
           GP+MPDGTRGFTMGRG+   P TS Q+
Sbjct: 463 GPRMPDGTRGFTMGRGKAIPPPTSTQT 418

[Close]

BLAST of Sed0002812 vs. TAIR 10
Match: AT5G46250.2 (RNA-binding protein )

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-71
Identity = 147/277 (53.07%), Postives = 197/277 (71.12%), Query Frame = 0


Query: 19  VDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHDHD-PEHIVRAD---VLSED 78
           VDSFP     D V    S++P +     + DHE+    + D D  E+ V  D   V  ++
Sbjct: 43  VDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDE 102

Query: 79  LKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAA 138
           L ++I++QVEYYFSDENLPTDK LL  +K+NK+GFVPI+ IA F +MKKLT++H+ I +A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 139 LRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIR 198
           L+ESS LVVS + KKVKRL   PLPE RD K+FT+LVENLPEDHS +NI++IF   G I+
Sbjct: 163 LKESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 222

Query: 199 SITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRSGMRVKL 258
           S++ICDP+AV++S K  K +  I  +LHA VEYET+EA+EKA ATLN+E+DWR+G+RVKL
Sbjct: 223 SVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAAATLNNEQDWRNGLRVKL 282

Query: 259 LKHLI-KHGQRKPHWRGPDPEKNSTGRLTDHSCPEKH 291
           L+    K  QR+P  R  D EK++TGR+ D +  EK+
Sbjct: 283 LEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKN 317

[Close]

BLAST of Sed0002812 vs. TAIR 10
Match: AT5G46250.3 (RNA-binding protein )

HSP 1 Score: 267.3 bits (682), Expect = 2.2e-71
Identity = 147/277 (53.07%), Postives = 197/277 (71.12%), Query Frame = 0


Query: 19  VDSFPSPPPRDLVGSPASDVPEIQSLTSEDDHEQVHKANHDHD-PEHIVRAD---VLSED 78
           VDSFP     D V    S++P +     + DHE+    + D D  E+ V  D   V  ++
Sbjct: 43  VDSFPVTESSDDVVVNVSEIPNLSPSDDDFDHERNSGEDRDQDHGENPVETDGVVVPIDE 102

Query: 79  LKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSFITAA 138
           L ++I++QVEYYFSDENLPTDK LL  +K+NK+GFVPI+ IA F +MKKLT++H+ I +A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162

Query: 139 LRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAVGRIR 198
           L+ESS LVVS + KKVKRL   PLPE RD K+FT+LVENLPEDHS +NI++IF   G I+
Sbjct: 163 LKESSFLVVSADEKKVKRLS--PLPEIRDPKIFTVLVENLPEDHSNENIREIFGKAGSIK 222

Query: 199 SITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRSGMRVKL 258
           S++ICDP+AV++S K  K +  I  +LHA VEYET+EA+EKAV TLN+E+DWR+G+RVKL
Sbjct: 223 SVSICDPNAVEESEKGGKKENFIRTRLHAFVEYETVEAAEKAVTTLNNEQDWRNGLRVKL 282

Query: 259 LKHLI-KHGQRKPHWRGPDPEKNSTGRLTDHSCPEKH 291
           L+    K  QR+P  R  D EK++TGR+ D +  EK+
Sbjct: 283 LEQAAGKFAQRRPARREVDKEKDTTGRVHDQTGGEKN 317

[Close]

BLAST of Sed0002812 vs. TAIR 10
Match: AT2G43970.1 (RNA-binding protein )

HSP 1 Score: 173.3 bits (438), Expect = 4.4e-43
Identity = 126/382 (32.98%), Postives = 191/382 (50.00%), Query Frame = 0


Query: 71  LSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEHSF 130
           L ED  ++IV QVEYYFSD NL T  HL+  I K+ EG+VPI ++A+FK++K +   +S 
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248

Query: 131 ITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFEAV 190
           + A L+ S+ L VS +GKKV+R+ PI      + +   I+ ENLPEDH  +N+ +IF  V
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308

Query: 191 GRIRSITICDPH-----AVDKSGKSSKGD-VLISNKLHALVEYETLEASEKAVATLNDER 250
           G +++I  C P      A   +  ++K D  L SNK+HA VEYE +E +E+AV  L++  
Sbjct: 309 GSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLFSNKVHAFVEYEIVELAERAVTELSEAG 368

Query: 251 DWRSGMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSG 310
           +WRSG++V+L   ++KH  ++P        K   GR            GH  D       
Sbjct: 369 NWRSGLKVRL---MLKHQTKEP--------KQGQGR---------GRKGHDADVEHEEDD 428

Query: 311 RLTDHSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEE 370
             T    P +       +Q+ + +G    H   ++   G      K +  R     G  +
Sbjct: 429 ATTSEQQPIE-------KQSDDCSGEWDTHM--QEQPIGEDQGNEKAAGQRKGRNRGRGK 488

Query: 371 IQNITEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGHGTTTSAHHIELS 430
            +   + H +   ++  +H H  NH H GR    +            +            
Sbjct: 489 GRGRGQPHQN--QNQNNNHSHNQNHNHNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGK 539

Query: 431 KPPPGPKMPDGTRGFTMGRGRP 447
           + PPGP+MPDGTRGF+MGRG+P
Sbjct: 549 QQPPGPRMPDGTRGFSMGRGKP 539

[Close]

BLAST of Sed0002812 vs. TAIR 10
Match: AT3G19090.1 (RNA-binding protein )

HSP 1 Score: 164.1 bits (414), Expect = 2.7e-40
Identity = 127/394 (32.23%), Postives = 191/394 (48.48%), Query Frame = 0


Query: 69  DVLSEDLKRRIVKQVEYYFSDENLPTDKHLLGLIKKNKEGFVPIAIIAAFKRMKKLTQEH 128
           ++LS+DL+ +IVKQVEY F+D +L  ++ +   I K+ EG+VP++ IA+ K++K LT  H
Sbjct: 138 NLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNH 197

Query: 129 SFITAALRESSVLVVSPNGKKVKRLHPIPLPETRDHKLFTILVENLPEDHSRKNIQQIFE 188
             ++ ALR SS LVVS +GKKVKR       +  + +  T++ ENLP+DHS +N+++IF 
Sbjct: 198 HLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFG 257

Query: 189 AVGRIRSITICDPHAVDKSGKSSKGDVLISNKLHALVEYETLEASEKAVATLNDERDWRS 248
            VG +++I IC  H  + +    KGD L+SNK+HAL+EY+    ++KAV  LNDER+WR 
Sbjct: 258 VVGNVKAIRIC--HPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVEKLNDERNWRK 317

Query: 249 GMRVKLLKHLIKHGQRKPHWRGPDPEKNSTGRLTDHSCPEKHSTGHPTDQNKNSSGRLTD 308
           G+RV+LL                                                     
Sbjct: 318 GLRVRLLLR--------------------------------------------------- 377

Query: 309 HSCPEKNSIGRPTEQNKNSTGRLANHSCPEKNSTGRPTDQNKNSSGRPTDPNGDEEIQNI 368
             C  K+ +    +  +N  G L +   P   S                   G++  +  
Sbjct: 378 --CSPKSVL----KNRRNFDGILIDDELPSYES-------------------GEDSPR-- 437

Query: 369 TEHHDDAPDDEEGDHQHKDNHGHRGRNQGWNRRQKYKSVNGMGH----------GTTTSA 428
             H  ++  D +GD  +      +GR +G  R  +  +V G G           G  +  
Sbjct: 438 -LHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYAVGGGGRSFGIGLGVSLGIPSLG 449

Query: 429 HHIELSKP---PPGPKMPDGTRGFTMGRGRPATS 450
            H E S P     GP+MPDGTRGFTMGRG+P+ S
Sbjct: 498 SH-ESSSPKTATKGPRMPDGTRGFTMGRGKPSIS 449

The following BLAST results are available for this feature:

BLAST of Sed0002812 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594473.1	2.8e-169	71.74	La-related protein 6A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7026470.1	3.7e-169	71.74	La-related protein 6A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023002907.1	1.1e-168	71.30	la-related protein 6A isoform X2 [Cucurbita maxima]	[more]
XP_038882123.1	1.8e-168	71.68	la-related protein 6A [Benincasa hispida]	[more]
XP_023518765.1	4.5e-167	71.52	la-related protein 6A isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0002812 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94A38	2.6e-85	44.52	La-related protein 6A OS=Arabidopsis thaliana OX=3702 GN=LARP6A PE=2 SV=1	[more]
O80567	6.2e-42	32.98	La-related protein 6B OS=Arabidopsis thaliana OX=3702 GN=LARP6B PE=1 SV=2	[more]
Q9LHL3	3.7e-39	32.23	La-related protein 6C OS=Arabidopsis thaliana OX=3702 GN=LARP6C PE=3 SV=1	[more]
Q05CL8	1.4e-17	34.07	La-related protein 7 OS=Mus musculus OX=10090 GN=Larp7 PE=1 SV=2	[more]
Q28G87	1.7e-15	28.36	La-related protein 7 OS=Xenopus tropicalis OX=8364 GN=larp7 PE=2 SV=1	[more]

BLAST of Sed0002812 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KKW8	5.2e-169	71.30	la-related protein 6A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=...	[more]
A0A6J1KMM2	3.7e-167	70.52	la-related protein 6A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496675 PE=...	[more]
A0A6J1EHU6	4.9e-167	70.86	la-related protein 6A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433532 P...	[more]
A0A6J1EEB2	3.5e-165	70.09	la-related protein 6A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433532 P...	[more]
A0A6J1D058	5.8e-160	68.42	la-related protein 6A OS=Momordica charantia OX=3673 GN=LOC111015798 PE=4 SV=1	[more]

BLAST of Sed0002812 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46250.1	1.9e-86	44.52	RNA-binding protein	[more]
AT5G46250.2	2.2e-71	53.07	RNA-binding protein	[more]
AT5G46250.3	2.2e-71	53.07	RNA-binding protein	[more]
AT2G43970.1	4.4e-43	32.98	RNA-binding protein	[more]
AT3G19090.1	2.7e-40	32.23	RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 139..152 score: 27.92 coord: 108..123 score: 42.05 coord: 82..99 score: 65.15
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 73..153 e-value: 1.1E-40 score: 151.1
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 79..137 e-value: 9.5E-25 score: 86.4
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 69..160 score: 27.396046
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 169..242 e-value: 1.6E-6 score: 27.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 167..254 score: 9.848526
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 67..157 e-value: 4.5E-31 score: 108.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 160..260 e-value: 3.6E-10 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..58
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 339..412
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 22..316
None	No IPR available	PANTHER	PTHR22792:SF102	LA-RELATED PROTEIN 6A	coord: 339..412
None	No IPR available	PANTHER	PTHR22792:SF102	LA-RELATED PROTEIN 6A	coord: 22..316
IPR034878	Plant La-related protein, RNA recognition motif	CDD	cd12288	RRM_La_like_plant	coord: 167..255 e-value: 9.87058E-41 score: 138.034
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 70..162
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 158..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002812.1	Sed0002812.1	mRNA
Sed0002812.2	Sed0002812.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005844	polysome
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding