Sed0002809 (gene) Chayote v1

Overview


Name	Sed0002809
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein RER1
Location	LG01: 2270477 .. 2272290 (+)
RNA-Seq Expression	Sed0002809
Synteny	Sed0002809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGGTTAGGAGGTGAGAATGACTCAGCGGCATCCCCCTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTGGATAAGACTACCCCACATGCTGTCTACAGATGGATCGGAACCCTTTTTGTTGTGGCAATTTTTGCATTGAGGGTCTTCTATATTCAAGGGTTCTACATTATTTCATATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTATCGCCCTTGGTTGACCCGGAGATGGAAGTTTCAGATGGACAGTTGCTGCCAACTAAAGGTTCAGATGAATTCAAGCCCTTCATTCGCCGACTTCCAGAGTTTAAGTTCTGGTAAATATGGAATTTCATTCATGAGCTTTTGAATCAGTTGCTTGTCTATATTTGGCCGGTAAACTTTGAAGTTAGCTTTTCTACAGTTTCATCATTGCAAATCCAATTCTCAGTATTCTGGTGATCCATTATGTTTAGTCTGGTACTGGAAAGTGTAAACATGTCTAAACTTGTTGACTTTGGTTGGAAAAAAAAATCATAGGCAGCGGTGAGTGAGGGAAACTGACAGTGGAGCGTGAGAATTTGGTTATGTTATAATCTCTTGTGTCTATTTTTGTTCATTGTGACCATTGGTCCACTACCCTTTGGTGCTTGTTGATGGGCTTTACTCGTTATGCATATAGTTACATTTTTTTAAAATTTTTGTGAGTGTCTGGGCCAGCTTATGTGCAGCTCAAAAACTTTTACGGGATATATTGTCTAATTGTTTGACCCTACACATTTAGATGTCAAGGAAATTTGTAGAAATTTAATTCCTAGGTAAATGATCCATGGACCTTGCTTTCTTCTATTAGTTAATTTGTTTGGAAGAGCTCTGCCTACCCCTTGAGACCATGCAAATGTGTAAAACTTGGGTAACTACTATTATGTCTGATTTGCTGAAATTTGCTATAGACGTCAGGGATATTCATTTCTGCCTCACGGTCGATCGATGGATACTGTTACTGCAAAATGTTACTTGTGCGTTTATGCAGTTTTCTGTATTTGAACTCAAAATGTTACTTGCGCATTTATGCAATCGAATTACTTGTTCCCCTCACAACACCATTCCCTTTTGGAAGTTAAGTTTTTAATTTTTATTCATTTCTCATATAAATGAATTGTTTTGTTTGTAGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGTAATGACCTTCTTTTCCATATTTGACGTTCCTGTCTTCTGGCCTATTTTACTCTGTTACTGGGTTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAATACAAATACATTCCATTTAGTCTTGGAAAACAGGTAACTTGTCAAATACTATTAATACATTATGCTGCTGTTTCTTTCTGATCTATCCGGCCTCGTAGTCCCCAAGAGGTGGCACAGTGGTTGAAGACTTTGGCTTTGAGGGTATGCTCCCCTCAAGATTCCAGGTTCGAGACTCAGCTGTGACATTACTCCTTCGATGTCTCCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACCCTTGTTTCAAAAAAAAGATCTATCCGGCCTCGTAATGTTGTGGTTTACTATTGTGTACTTAGAGTCGTTATTTACTAAGTCATACATGATGCCGCTGAAACTCGGATTCTTTTGACATACCTAGAGTCGTTATAGCTTTTCAGAACTCTTTGGAAACAAAGATTTATATGAAGTATTTAATATTTTACAGAAGTACGGTGGCCAGAAACGTTCAGCCGGTCGGGGTTTCGCCAACGACGATTGA

mRNA sequence

ATGGACGGGTTAGGAGGTGAGAATGACTCAGCGGCATCCCCCTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTGGATAAGACTACCCCACATGCTGTCTACAGATGGATCGGAACCCTTTTTGTTGTGGCAATTTTTGCATTGAGGGTCTTCTATATTCAAGGGTTCTACATTATTTCATATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTATCGCCCTTGGTTGACCCGGAGATGGAAGTTTCAGATGGACAGTTGCTGCCAACTAAAGGTTCAGATGAATTCAAGCCCTTCATTCGCCGACTTCCAGAGTTTAAGTTCTGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGTAATGACCTTCTTTTCCATATTTGACGTTCCTGTCTTCTGGCCTATTTTACTCTGTTACTGGGTTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAATACAAATACATTCCATTTAGTCTTGGAAAACAGAAGTACGGTGGCCAGAAACGTTCAGCCGGTCGGGGTTTCGCCAACGACGATTGA

Coding sequence (CDS)

ATGGACGGGTTAGGAGGTGAGAATGACTCAGCGGCATCCCCCTTGAGCCAGTGGCAACATGATATTTCAAGGCTTTATCAATATTATCTGGATAAGACTACCCCACATGCTGTCTACAGATGGATCGGAACCCTTTTTGTTGTGGCAATTTTTGCATTGAGGGTCTTCTATATTCAAGGGTTCTACATTATTTCATATGGTCTGGGTATCTATATACTCAATTTGTTGATTGGATTTTTATCGCCCTTGGTTGACCCGGAGATGGAAGTTTCAGATGGACAGTTGCTGCCAACTAAAGGTTCAGATGAATTCAAGCCCTTCATTCGCCGACTTCCAGAGTTTAAGTTCTGGTACTCTTTTACAAAGGCCTTTTGCATTGCCTTTGTAATGACCTTCTTTTCCATATTTGACGTTCCTGTCTTCTGGCCTATTTTACTCTGTTACTGGGTTGTCCTTTTTGTCCTGACAATGAGGCGTCAGATTTCACATATGATCAAATACAAATACATTCCATTTAGTCTTGGAAAACAGAAGTACGGTGGCCAGAAACGTTCAGCCGGTCGGGGTTTCGCCAACGACGATTGA

Protein sequence

MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQGFYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYGGQKRSAGRGFANDD

Homology

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BLAST of Sed0002809 vs. NCBI nr
Match: XP_022947776.1 (protein RER1A-like [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 4.7e-97
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAI+ALRVFYIQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVFYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SAG   +N+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of Sed0002809 vs. NCBI nr
Match: XP_022943556.1 (protein RER1A-like [Cucurbita moschata] >KAG7010926.1 Protein RER1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 364.0 bits (933), Expect = 8.0e-97
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHD+SRLYQYYLDKTTPHAVYRWIGTLFV+AI+ALRVFY+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDVSRLYQYYLDKTTPHAVYRWIGTLFVLAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQI+HMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SA  G +NDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of Sed0002809 vs. NCBI nr
Match: XP_023533159.1 (protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.6 bits (932), Expect = 1.0e-96
Identity = 178/194 (91.75%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAI+ALRV+YIQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVYYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SAG   +N+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of Sed0002809 vs. NCBI nr
Match: XP_023007341.1 (protein RER1A-like [Cucurbita maxima])

HSP 1 Score: 362.1 bits (928), Expect = 3.1e-96
Identity = 177/194 (91.24%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPH VYRWIGTLFVVAI+ALRV+YIQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHTVYRWIGTLFVVAIYALRVYYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SAG   +N+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of Sed0002809 vs. NCBI nr
Match: XP_038900392.1 (protein RER1A-like [Benincasa hispida] >XP_038900393.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.2e-96
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPH VYRWIGT+FVVAI+ALRVFY+QG
Sbjct: 1   MDGIGGEAASAAAPLSQWQHDISRLYQYYLDKTTPHTVYRWIGTIFVVAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPF+RRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFVRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFS GKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSFGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SA  G +NDD
Sbjct: 181 GKKPSASSGISNDD 194

[Close]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.1e-80
Identity = 147/189 (77.78%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MD  GG++ S A+P+ Q  H+  R+YQ+YLDKTTPHA YRWIGTL V  I+ LRV+YIQG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEM-EVSDGQLLPTKGSDEFKPFIRRLPEFKFWYS 120
           FYII+YGLGIY+LNLLIGFLSPLVDPE   VSDG  LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 121 FTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKY 180
            TKAFCIAF+MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQI+HMIKYKYIPFS GKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 181 GGQKRSAGR 189
           GG+  S  R
Sbjct: 181 GGRSSSGSR 189

[Close]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 9.3e-80
Identity = 145/189 (76.72%), Postives = 165/189 (87.30%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           M+G GG++ S A+P+ +  H+  R+YQYYLDKTTPH+  RWIGTL    I+ LRV+ I G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIISYGLGIY+LNLLIGFLSPLVDPE+EVSDG  LPT+GSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAF+MTFFS+FDVPVFWPILLCYWVVLFVLTMRRQI+HMIK+KYIPFS+GKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GQKRSAGRG 190
           G+K SA  G
Sbjct: 181 GRKSSANSG 189

[Close]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-56
Identity = 103/174 (59.20%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 7   ENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQGFYIISY 66
           ++ S A  +++  H  S+  Q+ LDKT PH +YRWI  L VV I+ +RV++++GFYII+Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 181
            F+MTFF +FDVPVFWPILL YWV+LF LTMR+QI HMIKY+Y+PFS GK++YG
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYG 202

[Close]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot
Match: Q9ZPV7 (Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-54
Identity = 105/178 (58.99%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 2   DGLGGENDS---AASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYI 61
           D  G EN++    ASPL++W+ + S+ +Q YLD++ P+ V RW+ TL    I+  RV+ +
Sbjct: 3   DEPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSV 62

Query: 62  QGFYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWY 121
            G+++ISYGL  YILNLLIGFLSP VDPE+E  D   LP   SDE+KPF+RRLPEFKFWY
Sbjct: 63  YGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWY 122

Query: 122 SFTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGK 177
           + TKAF +AFVMTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y PF + K
Sbjct: 123 AATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

[Close]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot
Match: A5PJ65 (Protein RER1 OS=Bos taurus OX=9913 GN=RER1 PE=2 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 5.0e-49
Identity = 100/193 (51.81%), Postives = 138/193 (71.50%), Query Frame = 0


Query: 2   DGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQGF 61
           D +G       S + ++   + ++YQ +LDK+TPH   RW+ TL +  I+ +RV+ +QG+
Sbjct: 5   DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGW 64

Query: 62  YIISYGLGIYILNLLIGFLSPLVDPEM--EVSDGQLLPTKGSDEFKPFIRRLPEFKFWYS 121
           YI++Y LGIY LNL I FLSP VDP +  +  DG  LPTK ++EF+PFIRRLPEFKFW++
Sbjct: 65  YIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHA 124

Query: 122 FTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKY 181
            TK   +A V TFF  F+VPVFWPIL+ Y+++LF +TM+RQI HMIKY+YIPF+ GK+ Y
Sbjct: 125 ATKGILVAMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRTY 184

Query: 182 GGQKRSAGRGFAN 193
            G K  AG+ FA+
Sbjct: 185 KG-KEDAGKAFAS 196

[Close]

BLAST of Sed0002809 vs. ExPASy TrEMBL
Match: A0A6J1G7E1 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111451535 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAI+ALRVFYIQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIYALRVFYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SAG   +N+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of Sed0002809 vs. ExPASy TrEMBL
Match: A0A6J1FS15 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111448292 PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.9e-97
Identity = 176/194 (90.72%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHD+SRLYQYYLDKTTPHAVYRWIGTLFV+AI+ALRVFY+QG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDVSRLYQYYLDKTTPHAVYRWIGTLFVLAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQI+HMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SA  G +NDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of Sed0002809 vs. ExPASy TrEMBL
Match: A0A6J1L096 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111499866 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 177/194 (91.24%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GGE  SAA+PLSQWQHDISRLYQYYLDKTTPH VYRWIGTLFVVAI+ALRV+YIQG
Sbjct: 1   MDGIGGETASAAAPLSQWQHDISRLYQYYLDKTTPHTVYRWIGTLFVVAIYALRVYYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SAG   +N+D
Sbjct: 181 GKKPSAGSSISNND 194

[Close]

BLAST of Sed0002809 vs. ExPASy TrEMBL
Match: A0A6J1CY56 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111015523 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.5e-96
Identity = 174/194 (89.69%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+GG+  SAA+PL+QWQHDISRLYQYYLDKTTPHAVYRWIGT+FV+AI+ALRV+Y+QG
Sbjct: 1   MDGIGGDTASAAAPLNQWQHDISRLYQYYLDKTTPHAVYRWIGTIFVLAIYALRVYYVQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQISHMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SA  G +NDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of Sed0002809 vs. ExPASy TrEMBL
Match: A0A6J1JGI9 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111484302 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.3e-96
Identity = 174/194 (89.69%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MDG+G E  SAA+PLSQWQHD+SRLYQYYLDKTTPHAVYRWIGTLFV+AI+ALRVFY+QG
Sbjct: 1   MDGIGSETASAAAPLSQWQHDVSRLYQYYLDKTTPHAVYRWIGTLFVLAIYALRVFYVQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYI+SYGLGIYILNLLIGFLSPLVDPEMEVSDG LLPTKGSDEFKPFIRRLPEFKFWYSF
Sbjct: 61  FYIVSYGLGIYILNLLIGFLSPLVDPEMEVSDGPLLPTKGSDEFKPFIRRLPEFKFWYSF 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFC AFVMTFFSIFDVPVFWPILLCYW+VLFVLTMRRQI+HMIKYKYIPFSLGKQKYG
Sbjct: 121 TKAFCTAFVMTFFSIFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSLGKQKYG 180

Query: 181 GQKRSAGRGFANDD 195
           G+K SA  G +NDD
Sbjct: 181 GKKASASSGISNDD 194

[Close]

BLAST of Sed0002809 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 298.1 bits (762), Expect = 5.0e-81
Identity = 147/189 (77.78%), Postives = 164/189 (86.77%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           MD  GG++ S A+P+ Q  H+  R+YQ+YLDKTTPHA YRWIGTL V  I+ LRV+YIQG
Sbjct: 1   MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEM-EVSDGQLLPTKGSDEFKPFIRRLPEFKFWYS 120
           FYII+YGLGIY+LNLLIGFLSPLVDPE   VSDG  LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 61  FYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYS 120

Query: 121 FTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKY 180
            TKAFCIAF+MTFFS+FDVPVFWPILLCYW+VLFVLTMRRQI+HMIKYKYIPFS GKQKY
Sbjct: 121 MTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKY 180

Query: 181 GGQKRSAGR 189
           GG+  S  R
Sbjct: 181 GGRSSSGSR 189

[Close]

BLAST of Sed0002809 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 297.7 bits (761), Expect = 6.6e-81
Identity = 145/189 (76.72%), Postives = 165/189 (87.30%), Query Frame = 0


Query: 1   MDGLGGENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQG 60
           M+G GG++ S A+P+ +  H+  R+YQYYLDKTTPH+  RWIGTL    I+ LRV+ I G
Sbjct: 1   MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHG 60

Query: 61  FYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSF 120
           FYIISYGLGIY+LNLLIGFLSPLVDPE+EVSDG  LPT+GSDEFKPFIRRLPEFKFWYS 
Sbjct: 61  FYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSM 120

Query: 121 TKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 180
           TKAFCIAF+MTFFS+FDVPVFWPILLCYWVVLFVLTMRRQI+HMIK+KYIPFS+GKQKY 
Sbjct: 121 TKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYS 180

Query: 181 GQKRSAGRG 190
           G+K SA  G
Sbjct: 181 GRKSSANSG 189

[Close]

BLAST of Sed0002809 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-57
Identity = 103/174 (59.20%), Postives = 136/174 (78.16%), Query Frame = 0


Query: 7   ENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQGFYIISY 66
           ++ S A  +++  H  S+  Q+ LDKT PH +YRWI  L VV I+ +RV++++GFYII+Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 181
            F+MTFF +FDVPVFWPILL YWV+LF LTMR+QI HMIKY+Y+PFS GK++YG
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYG 202

[Close]

BLAST of Sed0002809 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-56
Identity = 104/174 (59.77%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 7   ENDSAASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYIQGFYIISY 66
           ++ S A  +++  H  S+  Q+ LDKT PH +YRWI  L VV I+ +RV++++GFYII+Y
Sbjct: 29  DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITY 88

Query: 67  GLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWYSFTKAFCI 126
            +GIY+LNL+I FLSP  DPE  ++ G  LPT+ SDE++PF+RRLPEFKFW S  +AF I
Sbjct: 89  AIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFII 148

Query: 127 AFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGKQKYG 181
            F+MTFF +FDVPVFWPILL YWV+LF LTMR+QI HMIKY+Y+PFS GK KYG
Sbjct: 149 GFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGK-KYG 201

[Close]

BLAST of Sed0002809 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 214.2 bits (544), Expect = 9.6e-56
Identity = 105/178 (58.99%), Postives = 133/178 (74.72%), Query Frame = 0


Query: 2   DGLGGENDS---AASPLSQWQHDISRLYQYYLDKTTPHAVYRWIGTLFVVAIFALRVFYI 61
           D  G EN++    ASPL++W+ + S+ +Q YLD++ P+ V RW+ TL    I+  RV+ +
Sbjct: 3   DEPGSENEADTIVASPLAKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSV 62

Query: 62  QGFYIISYGLGIYILNLLIGFLSPLVDPEMEVSDGQLLPTKGSDEFKPFIRRLPEFKFWY 121
            G+++ISYGL  YILNLLIGFLSP VDPE+E  D   LP   SDE+KPF+RRLPEFKFWY
Sbjct: 63  YGYFVISYGLATYILNLLIGFLSPKVDPELEALDPDSLPVDESDEYKPFVRRLPEFKFWY 122

Query: 122 SFTKAFCIAFVMTFFSIFDVPVFWPILLCYWVVLFVLTMRRQISHMIKYKYIPFSLGK 177
           + TKAF +AFVMTFFS  DVPVFWPILLCYW+VL+ LTM+R I HM KY+Y PF + K
Sbjct: 123 AATKAFVVAFVMTFFSFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRK 180

The following BLAST results are available for this feature:

BLAST of Sed0002809 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947776.1	4.7e-97	92.27	protein RER1A-like [Cucurbita moschata]	[more]
XP_022943556.1	8.0e-97	90.72	protein RER1A-like [Cucurbita moschata] >KAG7010926.1 Protein RER1B, partial [Cu...	[more]
XP_023533159.1	1.0e-96	91.75	protein RER1A-like [Cucurbita pepo subsp. pepo]	[more]
XP_023007341.1	3.1e-96	91.24	protein RER1A-like [Cucurbita maxima]	[more]
XP_038900392.1	5.2e-96	90.21	protein RER1A-like [Benincasa hispida] >XP_038900393.1 protein RER1A-like [Benin...	[more]

BLAST of Sed0002809 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48670	7.1e-80	77.78	Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1	[more]
O48671	9.3e-80	76.72	Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2	[more]
Q9ZWI7	1.9e-56	59.20	Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1	[more]
Q9ZPV7	1.3e-54	58.99	Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2	[more]
A5PJ65	5.0e-49	51.81	Protein RER1 OS=Bos taurus OX=9913 GN=RER1 PE=2 SV=2	[more]

BLAST of Sed0002809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7E1	2.3e-97	92.27	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111451535 PE=3 SV=1	[more]
A0A6J1FS15	3.9e-97	90.72	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111448292 PE=3 SV=1	[more]
A0A6J1L096	1.5e-96	91.24	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111499866 PE=3 SV=1	[more]
A0A6J1CY56	2.5e-96	89.69	Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111015523 PE=3 SV=1	[more]
A0A6J1JGI9	7.3e-96	89.69	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111484302 PE=3 SV=1	[more]

BLAST of Sed0002809 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39220.1	5.0e-81	77.78	Rer1 family protein	[more]
AT2G21600.1	6.6e-81	76.72	endoplasmatic reticulum retrieval protein 1B	[more]
AT2G23310.1	1.3e-57	59.20	Rer1 family protein	[more]
AT2G23310.2	1.5e-56	59.77	Rer1 family protein	[more]
AT2G18240.1	9.6e-56	58.99	Rer1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004932	Retrieval of early ER protein Rer1	PIRSF	PIRSF016013	AtER_Rer1p	coord: 1..190 e-value: 2.7E-87 score: 289.4
IPR004932	Retrieval of early ER protein Rer1	PFAM	PF03248	Rer1	coord: 18..180 e-value: 1.9E-74 score: 249.1
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 1..186
None	No IPR available	PANTHER	PTHR10743:SF17	PROTEIN RER1A	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002809.1	Sed0002809.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006621	protein retention in ER lumen
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0030173	integral component of Golgi membrane
cellular_component	GO:0016021	integral component of membrane