Sed0002756 (gene) Chayote v1

Overview


Name	Sed0002756
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL56-like
Location	LG01: 12107659 .. 12108595 (+)
RNA-Seq Expression	Sed0002756
Synteny	Sed0002756

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACAGAGACATTCAAACACAAACCTCAACAAAAACACAAACACAAACACACAAGACCCACAAAAAAAAAAACCCCTTTCTTGGATTGGTTGGATTTTGAATTCAAGAACCATGGTTATGGAGATTGTAGTATCAGCTGCTCTGTTGCTGGTTGGGATCGCTGTTTTGGTGCTGATCCATGTCTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGAAGGGGAGAGGATTATATGGAGAAGAAGCAAACTTTCAAATGAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAAAAAACAGAGAGAAGAAATGGAGTTGATTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATTGGGGAAATTTGCAGATTGTTGCCAAATTGTAGACATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTCAACACACCCTTTTGCCCAATTTGCAGAACTTGTGCTTTTGTTCCCAAAATTGGCTTGGCTTTGGAGCACCAAAATGATGGGATTCGCCAAATTCAGCTCAATTGAAGAACGTTTTTTTTTCAATCAAGTTCGCCGGGAAATGTCACTGCCGCTGCTTCCGCCGCCGGGTGCGGCGGCCGGAGGGAGATGAACTTCAGAAGAAGCACCGCCGTCAATAAGTGGGATGGACGTTATTACTGTTATTGGTGAAAAAGTTTGAGAATTTGGCAAATGGAAGGGGCTGAGAAGAAGGGGGTAAAAGTAGTGTTATGGATAATTTTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTGCTCTTGTTAATTTTTTTAAAAACTAGGTTTGTATGTCTGAAGTTGAGGAATTTGGGAGATTAAGGTCCTTTTTTATGTTTTGAGATTTGAGGTGCATATGGTATTGGATTAATTCAGTGATGAAAAATTAAATAATAATGGTAATTATTA

mRNA sequence

GAGACAGAGACATTCAAACACAAACCTCAACAAAAACACAAACACAAACACACAAGACCCACAAAAAAAAAAACCCCTTTCTTGGATTGGTTGGATTTTGAATTCAAGAACCATGGTTATGGAGATTGTAGTATCAGCTGCTCTGTTGCTGGTTGGGATCGCTGTTTTGGTGCTGATCCATGTCTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGAAGGGGAGAGGATTATATGGAGAAGAAGCAAACTTTCAAATGAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAAAAAACAGAGAGAAGAAATGGAGTTGATTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATTGGGGAAATTTGCAGATTGTTGCCAAATTGTAGACATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTCAACACACCCTTTTGCCCAATTTGCAGAACTTGTGCTTTTGTTCCCAAAATTGGCTTGGCTTTGGAGCACCAAAATGATGGGATTCGCCAAATTCAGCTCAATTGAAGAACGTTTTTTTTTCAATCAAGTTCGCCGGGAAATGTCACTGCCGCTGCTTCCGCCGCCGGGTGCGGCGGCCGGAGGGAGATGAACTTCAGAAGAAGCACCGCCGTCAATAAGTGGGATGGACGTTATTACTGTTATTGGTGAAAAAGTTTGAGAATTTGGCAAATGGAAGGGGCTGAGAAGAAGGGGGTAAAAGTAGTGTTATGGATAATTTTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTGCTCTTGTTAATTTTTTTAAAAACTAGGTTTGTATGTCTGAAGTTGAGGAATTTGGGAGATTAAGGTCCTTTTTTATGTTTTGAGATTTGAGGTGCATATGGTATTGGATTAATTCAGTGATGAAAAATTAAATAATAATGGTAATTATTA

Coding sequence (CDS)

ATGGTTATGGAGATTGTAGTATCAGCTGCTCTGTTGCTGGTTGGGATCGCTGTTTTGGTGCTGATCCATGTCTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGAAGGGGAGAGGATTATATGGAGAAGAAGCAAACTTTCAAATGAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAAAAAACAGAGAGAAGAAATGGAGTTGATTTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATTGGGGAAATTTGCAGATTGTTGCCAAATTGTAGACATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTCAACACACCCTTTTGCCCAATTTGCAGAACTTGTGCTTTTGTTCCCAAAATTGGCTTGGCTTTGGAGCACCAAAATGATGGGATTCGCCAAATTCAGCTCAATTGA

Protein sequence

MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGEEGERIIWRRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQNDGIRQIQLN

Homology

[Close]

BLAST of Sed0002756 vs. NCBI nr
Match: XP_022954431.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo] >KAG6573050.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012238.1 RING-H2 finger protein ATL56, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.9 bits (546), Expect = 4.4e-52
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPC 60
           MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPC
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG---IWRSNLGKNLSNQDLEKLPC 60

Query: 61  YEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPIC 120
           YEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRHSFHV+CIDSWL  TP CPIC
Sbjct: 61  YEYKSGEK-QSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 120

Query: 121 RTCAFVPKIGLALEHQND 135
           RTCA VPK GL LEHQND
Sbjct: 121 RTCAVVPKFGLVLEHQND 134

[Close]

BLAST of Sed0002756 vs. NCBI nr
Match: XP_022994122.1 (RING-H2 finger protein ATL56-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 5.8e-52
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPC 60
           MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPC
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG---IWRSNLGKNLSNQDLEKLPC 60

Query: 61  YEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPIC 120
           YEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRHSFHV+CIDSWL  TP CPIC
Sbjct: 61  YEYKSGEK-QSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 120

Query: 121 RTCAFVPKIGLALEHQND 135
           RTCA VPK GL LEHQND
Sbjct: 121 RTCAAVPKFGLVLEHQND 134

[Close]

BLAST of Sed0002756 vs. NCBI nr
Match: TQD76870.1 (hypothetical protein C1H46_037576 [Malus baccata])

HSP 1 Score: 157.5 bits (397), Expect = 8.4e-35
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 3   MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLP 62
           MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPI 122
           C++Y + EK    N   ++C VCLESFK GE CRLLPNCRHSFH QCIDSWL  TP CP+
Sbjct: 61  CFDYTAEEKGTTTNH-PVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPV 120

Query: 123 CRTCAFVPKIGLAL 130
           CRTCA  PKI ++L
Sbjct: 121 CRTCAKTPKIDVSL 133

[Close]

BLAST of Sed0002756 vs. NCBI nr
Match: TQD71521.1 (hypothetical protein C1H46_042940 [Malus baccata])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 79/134 (58.96%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 3   MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLP 62
           MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPI 122
           C++Y + EK    N   ++C VCLESFK GE CRLLPNCRHSFH QC+DSWL  TP CP+
Sbjct: 61  CFDYTAEEKGTTTNH-PVDCAVCLESFKGGEKCRLLPNCRHSFHAQCVDSWLLKTPVCPV 120

Query: 123 CRTCAFVPKIGLAL 130
           CRTCA  PKI ++L
Sbjct: 121 CRTCAKTPKIDVSL 133

[Close]

BLAST of Sed0002756 vs. NCBI nr
Match: XP_010101192.2 (RING-H2 finger protein ATL80 [Morus notabilis])

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 81/147 (55.10%), Postives = 101/147 (68.71%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG-------ERIIWRRSKLSNEDLE 60
           MVMEIV+S  LL VGIAVLV+IH+CIVGRAF RG +G         I+    ++S+EDL+
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLK 60

Query: 61  KLPCYEYK-SGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTP 120
            +PC++Y  SGEK        ++C VCLE+FK G+ CRLLP+C HSFH QCIDSWL  TP
Sbjct: 61  MIPCFDYNMSGEK----ESSFVDCAVCLENFKAGDKCRLLPSCNHSFHSQCIDSWLLRTP 120

Query: 121 FCPICRTCAFVPKIGLALEHQNDGIRQ 139
            CPICRTCA   KIG+ L  +  G+ Q
Sbjct: 121 VCPICRTCAKPAKIGVVLGEEASGVSQ 143

[Close]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-13
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 42  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQ 101
           RR  L N  +E  P + Y S  K  +    DLEC +CL   +  E  RLLP C H FH+ 
Sbjct: 92  RRGGLDNAVVESFPVFAY-SSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHID 151

Query: 102 CIDSWLFNTPFCPICRT 119
           CID+WL++   CP+CR+
Sbjct: 152 CIDTWLYSHATCPVCRS 167

[Close]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 9.3e-13
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 46  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDS 105
           LS + L KLPCY   S E   R+      C +CL+  K GEI R LP C H+FH+ C+D 
Sbjct: 151 LSGDSLRKLPCY-IMSSEMVRRQ---VTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDK 210

Query: 106 WLFNTPFCPICR 118
           WL     CPICR
Sbjct: 211 WLIRHGSCPICR 218

[Close]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.9e-12
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 70  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC 120
           G+D ECV+CL  F  GE  RLLP C H FHV+CID WL     CP CR C
Sbjct: 130 GLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNC 179

[Close]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 7.9e-12
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 42  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQ 101
           + S +    +E LP + +  G  +  ++G  LEC VCL  F+  E+ RLLP C+H+FHV+
Sbjct: 117 KNSGIDRSVIESLPVFRF--GALSGHKDG--LECAVCLARFEPTEVLRLLPKCKHAFHVE 176

Query: 102 CIDSWLFNTPFCPICR 118
           C+D+WL     CP+CR
Sbjct: 177 CVDTWLDAHSTCPLCR 188

[Close]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 38/104 (36.54%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 28  GRAFRGEEGERIIWRRSKLSNED---LEKLPCYEYKSGEKTERRNGVDLECVVCLESFKI 87
           GR   G+      W  S  S  D   + K+   +Y+ G+          +C VCL  F  
Sbjct: 111 GRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTT----DCSVCLGEFSD 170

Query: 88  GEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLA 129
           GE  RLLP C H+FH QCID+WL +   CP+CR       +GLA
Sbjct: 171 GESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLA 210

[Close]

BLAST of Sed0002756 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPC 60
           MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPC
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG---IWRSNLGKNLSNQDLEKLPC 60

Query: 61  YEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPIC 120
           YEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRHSFHV+CIDSWL  TP CPIC
Sbjct: 61  YEYKSGEK-QSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 120

Query: 121 RTCAFVPKIGLALEHQND 135
           RTCA VPK GL LEHQND
Sbjct: 121 RTCAVVPKFGLVLEHQND 134

[Close]

BLAST of Sed0002756 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.8e-52
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPC 60
           MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPC
Sbjct: 1   MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG---IWRSNLGKNLSNQDLEKLPC 60

Query: 61  YEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPIC 120
           YEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRHSFHV+CIDSWL  TP CPIC
Sbjct: 61  YEYKSGEK-QSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPIC 120

Query: 121 RTCAFVPKIGLALEHQND 135
           RTCA VPK GL LEHQND
Sbjct: 121 RTCAAVPKFGLVLEHQND 134

[Close]

BLAST of Sed0002756 vs. ExPASy TrEMBL
Match: A0A540KRN2 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.0e-35
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 3   MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLP 62
           MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPI 122
           C++Y + EK    N   ++C VCLESFK GE CRLLPNCRHSFH QCIDSWL  TP CP+
Sbjct: 61  CFDYTAEEKGTTTNH-PVDCAVCLESFKRGEKCRLLPNCRHSFHAQCIDSWLLKTPVCPV 120

Query: 123 CRTCAFVPKIGLAL 130
           CRTCA  PKI ++L
Sbjct: 121 CRTCAKTPKIDVSL 133

[Close]

BLAST of Sed0002756 vs. ExPASy TrEMBL
Match: A0A540KBC1 (RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_042940 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.9e-35
Identity = 79/134 (58.96%), Postives = 99/134 (73.88%), Query Frame = 0


Query: 3   MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLP 62
           MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LP
Sbjct: 1   MEILISVILLFVGVAVLVVIHVCIIGRAFNRGHDQGVNLVQRSSIVAIKKMSNEELNMLP 60

Query: 63  CYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPI 122
           C++Y + EK    N   ++C VCLESFK GE CRLLPNCRHSFH QC+DSWL  TP CP+
Sbjct: 61  CFDYTAEEKGTTTNH-PVDCAVCLESFKGGEKCRLLPNCRHSFHAQCVDSWLLKTPVCPV 120

Query: 123 CRTCAFVPKIGLAL 130
           CRTCA  PKI ++L
Sbjct: 121 CRTCAKTPKIDVSL 133

[Close]

BLAST of Sed0002756 vs. ExPASy TrEMBL
Match: A0A6P3YXL3 (RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.5e-34
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 0


Query: 1   MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG--ERIIWRRS----KLSNEDLEK 60
           MVMEIV+S  LL VGIAVLV+IHVCIVGRAF RG +G    ++ R S    ++SNEDL+ 
Sbjct: 1   MVMEIVISVILLFVGIAVLVVIHVCIVGRAFGRGNQGMVNMVVQRSSIGSKRMSNEDLKM 60

Query: 61  LPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFC 120
           LPC++Y  G + +  +   ++C VCLE+FK GE CRLLPNCRHSFH  CIDSWL  TP C
Sbjct: 61  LPCFDYVDG-RDKGSSSSPVDCAVCLENFKDGEKCRLLPNCRHSFHALCIDSWLLKTPIC 120

Query: 121 PICRTCAFVPKIGLAL 130
           PICRTCA  PK+ + L
Sbjct: 121 PICRTCANPPKVDVIL 135

[Close]

BLAST of Sed0002756 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 42  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQ 101
           RR  L N  +E  P + Y S  K  +    DLEC +CL   +  E  RLLP C H FH+ 
Sbjct: 92  RRGGLDNAVVESFPVFAY-SSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHID 151

Query: 102 CIDSWLFNTPFCPICRT 119
           CID+WL++   CP+CR+
Sbjct: 152 CIDTWLYSHATCPVCRS 167

[Close]

BLAST of Sed0002756 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 6.6e-14
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 46  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDS 105
           LS + L KLPCY   S E   R+      C +CL+  K GEI R LP C H+FH+ C+D 
Sbjct: 151 LSGDSLRKLPCY-IMSSEMVRRQ---VTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDK 210

Query: 106 WLFNTPFCPICR 118
           WL     CPICR
Sbjct: 211 WLIRHGSCPICR 218

[Close]

BLAST of Sed0002756 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 70  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC 120
           G+D ECV+CL  F  GE  RLLP C H FHV+CID WL     CP CR C
Sbjct: 130 GLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNC 179

[Close]

BLAST of Sed0002756 vs. TAIR 10
Match: AT5G05810.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 42  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQ 101
           + S +    +E LP + +  G  +  ++G  LEC VCL  F+  E+ RLLP C+H+FHV+
Sbjct: 63  KNSGIDRSVIESLPVFRF--GALSGHKDG--LECAVCLARFEPTEVLRLLPKCKHAFHVE 122

Query: 102 CIDSWLFNTPFCPICR 118
           C+D+WL     CP+CR
Sbjct: 123 CVDTWLDAHSTCPLCR 134

[Close]

BLAST of Sed0002756 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 43  RSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQC 102
           R  L ++ +  LP Y Y    K  +RN    +CV+CL  F+ GE  +++P+C H FHV C
Sbjct: 113 RRGLDSQAVRSLPVYRYTKAAK--QRNE---DCVICLSDFEEGETVKVIPHCGHVFHVDC 172

Query: 103 IDSWLFNTPFCPICRT 119
           +D+WL +   CP+CR+
Sbjct: 173 VDTWLSSYVTCPLCRS 183

The following BLAST results are available for this feature:

BLAST of Sed0002756 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954431.1	4.4e-52	80.43	RING-H2 finger protein ATL56-like [Cucurbita moschata] >XP_023542202.1 RING-H2 f...	[more]
XP_022994122.1	5.8e-52	80.43	RING-H2 finger protein ATL56-like [Cucurbita maxima]	[more]
TQD76870.1	8.4e-35	59.70	hypothetical protein C1H46_037576 [Malus baccata]	[more]
TQD71521.1	1.4e-34	58.96	hypothetical protein C1H46_042940 [Malus baccata]	[more]
XP_010101192.2	2.4e-34	55.10	RING-H2 finger protein ATL80 [Morus notabilis]	[more]

BLAST of Sed0002756 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W571	1.9e-13	42.86	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q8LBA0	9.3e-13	47.22	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
P0C034	7.9e-12	58.00	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q5EAE9	7.9e-12	40.79	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q7XLY8	1.3e-11	36.54	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Sed0002756 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQW8	2.1e-52	80.43	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ...	[more]
A0A6J1JUU5	2.8e-52	80.43	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE...	[more]
A0A540KRN2	4.0e-35	59.70	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_037576 P...	[more]
A0A540KBC1	6.9e-35	58.96	RING-type domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_042940 P...	[more]
A0A6P3YXL3	1.5e-34	59.56	RING-H2 finger protein ATL74-like OS=Ziziphus jujuba OX=326968 GN=LOC107406134 P...	[more]

BLAST of Sed0002756 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40070.1	1.3e-14	42.86	RING/U-box superfamily protein	[more]
AT1G74410.1	6.6e-14	47.22	RING/U-box superfamily protein	[more]
AT1G49220.1	5.6e-13	58.00	RING/U-box superfamily protein	[more]
AT5G05810.1	5.6e-13	40.79	RING/U-box superfamily protein	[more]
AT2G27940.1	1.3e-12	39.47	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 75..116 e-value: 4.3E-6 score: 36.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 74..117 e-value: 3.3E-11 score: 43.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 75..117 score: 11.987676
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 35..121 e-value: 5.3E-19 score: 69.7
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..133
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..133
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 68..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002756.1	Sed0002756.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane