Sed0002745 (gene) Chayote v1

Overview


Name	Sed0002745
Type	gene
Organism	Sechium edule (Chayote v1)
Description	BZIP transcription factor family protein
Location	LG11: 4126534 .. 4126884 (+)
RNA-Seq Expression	Sed0002745
Synteny	Sed0002745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACCTCTCTTATAATCTTCTACACAAAAAACACCAACTTCTCCCTTAGCCATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGAAACTAGTTCTTCTTCTTCTTCTTTATATGTCTTATTTTAAGTGTAACTCGCAC

mRNA sequence

CCAACCTCTCTTATAATCTTCTACACAAAAAACACCAACTTCTCCCTTAGCCATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGAAACTAGTTCTTCTTCTTCTTCTTTATATGTCTTATTTTAAGTGTAACTCGCAC

Coding sequence (CDS)

ATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGA

Protein sequence

MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIHTQIRSLETE

Homology

[Close]

BLAST of Sed0002745 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGI 60
          M+S NNKRQK KSPSCFFSIFSLFRSRD  +RRDE IDD RKVWPSD DR R+WVAEPGI
Sbjct: 1  MASTNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDETIDDMRKVWPSDEDRDRYWVAEPGI 60

Query: 61 DRKAKAYIEKIHTQIRSLETE 82
          DRKAKAYI+KIHTQIRS  TE
Sbjct: 61 DRKAKAYIDKIHTQIRSSGTE 81

[Close]

BLAST of Sed0002745 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of Sed0002745 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDE---AIDDTRKVWPSDGDRGRHWVAE 60
          M+S+N++R+K KSPSC FSI +LF+SR   +R D+   A++DTRKVWPSD D+GRHWVAE
Sbjct: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60

Query: 61 PGIDRKAKAYIEKIHTQIR 77
          PGIDRKAKAYI++IH QIR
Sbjct: 61 PGIDRKAKAYIDRIHYQIR 79

[Close]

BLAST of Sed0002745 vs. NCBI nr
Match: XP_010094905.1 (uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical protein L484_022654 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 5  NNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKA 64
          NN   + K  S FFS+F   R+R   R  D A++D R+VWPSD DRGR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

[Close]

BLAST of Sed0002745 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 6  NKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKAK 65
          NK +KS S   FF  F   R+R G     + +   RKVWPSD D+   WVAEPGIDRKAK
Sbjct: 4  NKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDRKAK 63

Query: 66 AYIEKIHTQIRSLETE 82
           YI++IH   R LETE
Sbjct: 64 DYIDRIHRN-RVLETE 78

[Close]

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIFSLF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS +T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0


Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 5  NNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKA 64
          NN   + K  S FFS+F   R+R   R  D A++D R+VWPSD DRGR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

[Close]

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 4  ANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDRGRHWVAEPG 63
          A NK++KS      FS+ ++F+SR   RR ++  DD     RK+WPSD D+G +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSAPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSLETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFIAKFH-EARITESE 77

[Close]

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 4  ANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDRGRHWVAEPG 63
          A NK++KS      FS+ ++F+SR   RR ++  DD     RK+WPSD D+G +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSLETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFITKFH-EARISESE 77

[Close]

BLAST of Sed0002745 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-08
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 18 FSIFSLFRSRDGGR-RRDEAIDD---TRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIH 73
          FS+FS F++R   R   D + DD   TRK   SD D+ R+WVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

[Close]

BLAST of Sed0002745 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 34 DEAIDD---TRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIH 73
          D + DD   TRK W SD D+ R+WVAEPGIDRKA A+I K H
Sbjct: 14 DASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:

BLAST of Sed0002745 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586063.1	3.9e-29	82.72	hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0056089.1	2.4e-26	79.52	hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAG6599163.1	1.9e-20	67.09	hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_010094905.1	8.2e-11	54.79	uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical p...	[more]
KAG6588556.1	1.4e-10	52.63	hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0002745 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ24	1.4e-27	80.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1	[more]
A0A5D3BDY2	1.1e-26	79.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
W9R5Q4	4.0e-11	54.79	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1	[more]
A0A067E306	5.7e-10	48.78	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1	[more]
V4SLM0	7.5e-10	48.78	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ...	[more]

BLAST of Sed0002745 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	3.1e-08	54.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	4.5e-07	61.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 4..76
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002745.1	Sed0002745.1	mRNA