Sed0002745 (gene) Chayote v1

Overview
NameSed0002745
Typegene
OrganismSechium edule (Chayote v1)
DescriptionBZIP transcription factor family protein
LocationLG11: 4126534 .. 4126884 (+)
RNA-Seq ExpressionSed0002745
SyntenySed0002745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACCTCTCTTATAATCTTCTACACAAAAAACACCAACTTCTCCCTTAGCCATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGAAACTAGTTCTTCTTCTTCTTCTTTATATGTCTTATTTTAAGTGTAACTCGCAC

mRNA sequence

CCAACCTCTCTTATAATCTTCTACACAAAAAACACCAACTTCTCCCTTAGCCATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGAAACTAGTTCTTCTTCTTCTTCTTTATATGTCTTATTTTAAGTGTAACTCGCAC

Coding sequence (CDS)

ATGTCCTCAGCCAACAACAAGAGACAAAAGTCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTGTTCAGATCCCGAGATGGTGGAAGGAGGCGAGATGAAGCGATAGACGATACGCGAAAGGTGTGGCCGAGCGATGGCGATAGAGGCCGACACTGGGTCGCTGAGCCTGGCATCGATAGGAAGGCTAAGGCTTACATCGAGAAGATCCATACGCAAATACGATCGCTCGAAACCGAATGA

Protein sequence

MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIHTQIRSLETE
Homology
BLAST of Sed0002745 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 3.9e-29
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGI 60
          M+S NNKRQK KSPSCFFSIFSLFRSRD  +RRDE IDD RKVWPSD DR R+WVAEPGI
Sbjct: 1  MASTNNKRQKPKSPSCFFSIFSLFRSRDSRKRRDETIDDMRKVWPSDEDRDRYWVAEPGI 60

Query: 61 DRKAKAYIEKIHTQIRSLETE 82
          DRKAKAYI+KIHTQIRS  TE
Sbjct: 61 DRKAKAYIDKIHTQIRSSGTE 81

BLAST of Sed0002745 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of Sed0002745 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MSSANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDE---AIDDTRKVWPSDGDRGRHWVAE 60
          M+S+N++R+K KSPSC FSI +LF+SR   +R D+   A++DTRKVWPSD D+GRHWVAE
Sbjct: 1  MASSNDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWVAE 60

Query: 61 PGIDRKAKAYIEKIHTQIR 77
          PGIDRKAKAYI++IH QIR
Sbjct: 61 PGIDRKAKAYIDRIHYQIR 79

BLAST of Sed0002745 vs. NCBI nr
Match: XP_010094905.1 (uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical protein L484_022654 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 5  NNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKA 64
          NN   + K  S FFS+F   R+R   R  D A++D R+VWPSD DRGR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

BLAST of Sed0002745 vs. NCBI nr
Match: KAG6588556.1 (hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 6  NKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKAK 65
          NK +KS S   FF  F   R+R G     + +   RKVWPSD D+   WVAEPGIDRKAK
Sbjct: 4  NKHKKSHSSFSFFGFFKSKRARKGEHYEHDELSCPRKVWPSDADKCHRWVAEPGIDRKAK 63

Query: 66 AYIEKIHTQIRSLETE 82
           YI++IH   R LETE
Sbjct: 64 DYIDRIHRN-RVLETE 78

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIFSLF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS +T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 2  SSANNKRQK-SKSPSCFFSIFSLFRSRDGGRRRDEA--IDDTRKVWPSDGDRGRHWVAEP 61
          SSANNKRQK  KS SC FSIF LF+SRDGG+R D+A  +DDTRKVWPSDGD+GRHWVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIEKIHTQIRSLETE 82
          GIDRKAKAYIEKIH QIRS E +
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 5  NNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDTRKVWPSDGDRGRHWVAEPGIDRKA 64
          NN   + K  S FFS+F   R+R   R  D A++D R+VWPSD DRGR WVAEPGIDRKA
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR---RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDRKA 63

Query: 65 KAYIEKIHTQIRS 78
          +A+I KIH  + +
Sbjct: 64 EAFIAKIHKNMNT 72

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.7e-10
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 4  ANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDRGRHWVAEPG 63
          A NK++KS      FS+ ++F+SR   RR ++  DD     RK+WPSD D+G +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSAPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSLETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFIAKFH-EARITESE 77

BLAST of Sed0002745 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 4  ANNKRQKSKSPSCFFSIFSLFRSRDGGRRRDEAIDDT----RKVWPSDGDRGRHWVAEPG 63
          A NK++KS      FS+ ++F+SR   RR ++  DD     RK+WPSD D+G +WVAEPG
Sbjct: 2  AGNKQKKSS-----FSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPG 61

Query: 64 IDRKAKAYIEKIHTQIRSLETE 82
          IDRKA A+I K H + R  E+E
Sbjct: 62 IDRKASAFITKFH-EARISESE 77

BLAST of Sed0002745 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-08
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 18 FSIFSLFRSRDGGR-RRDEAIDD---TRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIH 73
          FS+FS F++R   R   D + DD   TRK   SD D+ R+WVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

BLAST of Sed0002745 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 34 DEAIDD---TRKVWPSDGDRGRHWVAEPGIDRKAKAYIEKIH 73
          D + DD   TRK W SD D+ R+WVAEPGIDRKA A+I K H
Sbjct: 14 DASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586063.13.9e-2982.72hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056089.12.4e-2679.52hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642... [more]
KAG6599163.11.9e-2067.09hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_010094905.18.2e-1154.79uncharacterized protein LOC21405464 [Morus notabilis] >EXB57548.1 hypothetical p... [more]
KAG6588556.11.4e-1052.63hypothetical protein SDJN03_17121, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ241.4e-2780.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1[more]
A0A5D3BDY21.1e-2679.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9R5Q44.0e-1154.79Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1[more]
A0A067E3065.7e-1048.78Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1[more]
V4SLM07.5e-1048.78Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G05858.13.1e-0854.24unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.14.5e-0761.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 4..76
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002745.1Sed0002745.1mRNA