Sed0002739 (gene) Chayote v1

Overview
NameSed0002739
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPoly [ADP-ribose] polymerase
LocationLG01: 58200234 .. 58202078 (+)
RNA-Seq ExpressionSed0002739
SyntenySed0002739
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGTATAACCAATAATACCGATCGACGACGCGCATCCTAGCTTTTTTCTTTTTCATTCATGTATCTCAAGACTCTTCTAAATGGTAAACTTGCTAGGTTACTTTTTCTTTTTGAAACAAGGATAACCACGTTAGTCTCTAGGCAGACACCGGGAGACATCGAAGAAGTAATGTCACAGGTGAGTCTCGAACCTGAGATCTTGAAAGGAGCATGCCTTCAAAACCCAAGTCTCTTCAACCACTGTGTCACCCTTGGGGATGCTATGTTACTCTTTTTGTAATCTATCCTAAAATAAATGAATGCCTTTTTGATGTATCTTGAATTGATATTTGACTTCATTGAATACAACTCTATTTTTGAAAGATGCTAAGTTTGTAGTGAAAAATTGGTATTCGATGGGAAACGGATTTTTGGTCTAAACAAAAGATCCATCTGGACAAAACGAAACCAGCAAGTTATCAAAATCAGTCTTGAATTCTCCCATCTCAGATGTAACCCTCCATTTTCTCCACTTTTTTCTTCTTTTCCTACGTAGAGAATATCATCATACCAACAGTTTTTTTCAGTTAACTCTGCTTCTTTATGATGTAGTTGATAAAAGAGTATCAAAATCCAAGTCAACGCCCTAATAGAAATATTGGCCAGTCAGATAAACCCGCCTTCTCCAGAATCTCTGTCCGTCCTTCAAGAACACAAGTTCATTGGTTGAGATCGTGCTTTTATGGCACAAGTTTTTATTGTGTTTATTTCACAAGTTTCCAATGATTATTAACCCAGTAATACAGGAGAAAAAAAATTCAGAAACATGGAGCTAATTCTGTTATTGATACATTCTCTTTCTTCTCATCCAGTGTTCTTAACTTTATCCTGACCAAGTGCTCAAACTCGACCTTCAAGATTTTGAAAGGTTATGAGTTTAATTTATTGTGGTTGTCTACTTAAAAATTACTTTTTTACAAATTTCTTTATGTCTAAATATTGCAGCATCAGTTGTGCTTTGCTTAGTTGTCTCGCCTGCCGAGAGAGAACGTGGTGGATCTTCCAAAGTTGAAGTAGTATGAGTTTCTTCCTTTCTAACCAAGATAAATGTAGTTCAGTTCAAGAGCTGTTTGGTTTTCAAAATTCCATACCATGAATGCTTATCTTTTTTAGTGAAAGAGGAATACAGGTCATATGAGAAGCTTAGCTGCTCGACAGCATTGAGAAGCAAGAATCTCAGCCATTGGTAGCTTATGATGTAGTTAACAGATCTACAGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTGTGTGTTTTCCAGGAATATGGAGCGAGTGTTGATAACATTATGCTACCAAATTTCTAACTTTCTTCACAGGCACTCGAAGCTCGAATCTGTTGAGGCACTTGTACAAAGGGTTCTTGCCAGCAATAATATACTCTAGTCCAGTCCCGGGTTACATGGTACTCAACAATTGTAATATTTTCTTTTAGACATCGAGATGAACCTGAATGCAGATTCTTGATTTTTCTTTGCAGTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

mRNA sequence

ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

Coding sequence (CDS)

ATGGCAAAGCATGAATATGAAGAGTTCTGTAAGGCTAGAAAAGAGAGTCTCTCCATTGATCAAATGAATGACCAAGACACAACTGGCCATCACTATGAAGTTGCTTCTAAATGGATCCCTAGGGACAAACAAGATCCATCTGAGGGGTTTGCCAAGGATTCTGATGATTATAAAAGTGATTGTATTCAGCAAACCTACGAGCCTGTAAAAGTTAGAGACATTGTATTCGATTACATACTCGAAGCATTATTGTTGAAGTTTGTCGTTCGAACTTTTGGTCGAGCCATTGTGTGCACTGATGATGCAGCAGAGGCAGCTAGTTATGGTTTTACTAGCGTAGCAGGCCAGAAGGATTTTTAG

Protein sequence

MAKHEYEEFCKARKESLSIDQMNDQDTTGHHYEVASKWIPRDKQDPSEGFAKDSDDYKSDCIQQTYEPVKVRDIVFDYILEALLLKFVVRTFGRAIVCTDDAAEAASYGFTSVAGQKDF
Homology
[Close]
BLAST of Sed0002739 vs. NCBI nr
Match: KAF6172097.1 (hypothetical protein GIB67_029515 [Kingdonia uniflora])

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0 

Query: 34  VASKWIPRDKQDPSEGFAKDSDDYKS--DCIQQTYEPVKVRDIVFDYILEALL------- 93
           ++SK I      P     K+ +DYK     +++TY+P+KV DI +   +E +        
Sbjct: 295 LSSKKIYEKLGCPVSPLEKEPEDYKMILKYLEKTYKPIKVEDISYGVTVENIFAVEPSAC 354

Query: 94  -----LKFVVRTFGRAIVCTDDAAEAASYGFTSV 114
                +K ++  FG+A+VCTD AAEAA YGFT+V
Sbjct: 355 PSLDDMKKLLNQFGKAVVCTDAAAEAAVYGFTAV 388

[Close]
BLAST of Sed0002739 vs. ExPASy TrEMBL
Match: A0A7J7NY45 (Poly [ADP-ribose] polymerase OS=Kingdonia uniflora OX=39325 GN=GIB67_029515 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 0 

Query: 34  VASKWIPRDKQDPSEGFAKDSDDYKS--DCIQQTYEPVKVRDIVFDYILEALL------- 93
           ++SK I      P     K+ +DYK     +++TY+P+KV DI +   +E +        
Sbjct: 295 LSSKKIYEKLGCPVSPLEKEPEDYKMILKYLEKTYKPIKVEDISYGVTVENIFAVEPSAC 354

Query: 94  -----LKFVVRTFGRAIVCTDDAAEAASYGFTSV 114
                +K ++  FG+A+VCTD AAEAA YGFT+V
Sbjct: 355 PSLDDMKKLLNQFGKAVVCTDAAAEAAVYGFTAV 388

The following BLAST results are available for this feature:
BLAST of Sed0002739 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF6172097.16.4e-0436.17hypothetical protein GIB67_029515 [Kingdonia uniflora][more]
BLAST of Sed0002739 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0002739 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7NY453.1e-0436.17Poly [ADP-ribose] polymerase OS=Kingdonia uniflora OX=39325 GN=GIB67_029515 PE=4... [more]
BLAST of Sed0002739 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002739.1Sed0002739.1mRNA