Sed0002680 (gene) Chayote v1

Overview
NameSed0002680
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 58612346 .. 58614317 (-)
RNA-Seq ExpressionSed0002680
SyntenySed0002680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTAAGAAGTTAAGATTGGCAGAGCATTCAACATCTCTATTGACGCGACTTTCGTTATCGCCAAATCGGGGCGCGGCTAAGGTGAGTTCTCACTTCTGAGTTCTGAGTCGTGTTTCTTCACCTAGTTTAGTAGTTTCCAGGTTTTTTTTTATCATTATTCTATTTTCTTGTTGTCTATAATATTCAAATGGCGAGCACAAATGTATCCATTCGGCCATTTCCATGTAATAATTGAAACTTGTGGGTTCTGTTTTTCTTTCTCTTTTATTTTGATACCCACTTGTGGGTTCTGCCTTTCAATGAAATTTGATATTCATGGATTGCAATTTTCGTGCTAATTTTAGTTTATACGAATGTTTGGCATTGGGTTAGGGTTTTCAAATTGGGAAATCCCAAGCTCGTTGGTTGGATTTGACGCTGTGTATGAATTCAAGTTAACTGTGATGGAGTCCCTCTCAAATTAATTAAAATTGAATTCATTTCTCAAATTTGTAAGTCTACATGTGAAAAAGAAACGTTAAACTTTTGGGGTGATTGGTTATTTATCTAGGGCTGGCCAGTTGCCAGAGGCAATTTGATTGCTTCTACTTTGAATCGTTCTTTGTTGTGGTTCATATCCTCTTTTTCAGCTGACTATCTCTTGAATTGAGATGTACTCGTCTCTGCATCAGTCATGAGTTTGTTTCGTGTCTGTATGATACCTAAAATACTTTATCTTATAACTCTCACTACACATTTTGTGAACATCCAATGTCTTGCACTCTTGGTTTTGCTATTTCATTAAATATCTTGCTCTTACTAATAAGCACGAGCACGACTTTTGCTGTCAAGTCTTAGGCCTGACCTTCTGTGAAAGTCCTTTTTCTGTATATACTCTCATAAAGAGCCTTAACAAACCAAACCAAACCAAACCAAAAGGTTATAGTTTCAATCTATAGTAGTCACTTACTTAGGGATTAGTTTTTTATGAATTTTCTTGACATCTAAATGTTGTAGAGTTATACAATATGTCGTGAGAAGATGATTGAGATGGACCTAAGCTAGTCTTGACACTTACAGTCTACAGATATAAAAGAAGTTATGTGCCAGAACTTATCACTTTTCTTGCTTGTTCAGAACTTCAGATGCTTATTATATTTTTATAGTTCTTTGATCTAACCACCACGAATTGTACATAACTTATCAAATTATGGAGAAACTTTACCATATGAATTTCCACCTCAAAACAAATTGACTCTGAGGGGAGTAATTCATATTTCTTATAAATGTGTTGAAAACTCCCCACCTTTCCAATGTGAGACAATTTCCACATAGTGAGCATGGTGAGTATCTCCAACATATGAACATAGCTTTTTTTTTTTTTTTTTTTTTTAATTTATATTTTTGTGACGATTTGGGTCAACTTACGTGAACCTTTTTTACAGGACAACATACTATATTTGGTTGTCAAGGAAACGTCTAAGATATTAATTCTTAGGCAGGTGACTATCATATATTAAATCCATCACCTATTAATTCCACGAACATCTTTTGACCACTAGGTTAACGCACGATGGTTTATGGTTTATGATATGAACTTAGTATAAGCCCATTTTTTAGAATTTATTGTCTTTTGCGCTATGCTAATCTTCTTTTAGCTTCTTGGTTTTTTTCCTAATTGTGCTTTGATATGTAGATTGTTGACTGTGCTGAGCGTTTCGTTTTCAACTTCTGTGGTTAGCCTTACATGGGAAACAAACCAGTGAAACCACAAGAACCTAGGGAAGAAATCTACTTGAAGATAGTGCCTCCTCTGGACCCTGCATATGTTAGGTGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAATCCTCGTGCTGTGAAGCCTCCCGATCATTACATAGAGTTCATGCACTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCAGATCTCGCCCATTTACTCAAATAG

mRNA sequence

ATGCAGGTTAAGAAGTTAAGATTGGCAGAGCATTCAACATCTCTATTGACGCGACTTTCGTTATCGCCAAATCGGGGCGCGGCTAAGCCTTACATGGGAAACAAACCAGTGAAACCACAAGAACCTAGGGAAGAAATCTACTTGAAGATAGTGCCTCCTCTGGACCCTGCATATGTTAGGTGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAATCCTCGTGCTGTGAAGCCTCCCGATCATTACATAGAGTTCATGCACTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCAGATCTCGCCCATTTACTCAAATAG

Coding sequence (CDS)

ATGCAGGTTAAGAAGTTAAGATTGGCAGAGCATTCAACATCTCTATTGACGCGACTTTCGTTATCGCCAAATCGGGGCGCGGCTAAGCCTTACATGGGAAACAAACCAGTGAAACCACAAGAACCTAGGGAAGAAATCTACTTGAAGATAGTGCCTCCTCTGGACCCTGCATATGTTAGGTGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCCAAGAAATCCTCGTGCTGTGAAGCCTCCCGATCATTACATAGAGTTCATGCACTTGAATGGATGGTTGGACGTGAGTTTAGACGATCCAGATCTCGCCCATTTACTCAAATAG

Protein sequence

MQVKKLRLAEHSTSLLTRLSLSPNRGAAKPYMGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMHLNGWLDVSLDDPDLAHLLK
Homology
[Close]
BLAST of Sed0002680 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 32  MGNKPVKPQE-PREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 91
           MGNKPVK QE  REEI+LKIVPPLD AYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 92  HLNGWLDVSLDDPDLAHLLK 111
            LNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Sed0002680 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 151.4 bits (381), Expect = 4.6e-33
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGNKPVK QE REEI LKIVPPLD AYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M 
Sbjct: 1   MGNKPVK-QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMR 60

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDV LDDPDLAHL K
Sbjct: 61  LNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Sed0002680 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-33
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0 

Query: 32  MGNKPVK-PQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 91
           MGN+ VK PQE R EI+LKIVPPLD AY+RWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 92  HLNGWLDVSLDDPDLAHLLK 111
            LNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Sed0002680 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGN+PVK  +P+EE++LKIVPPLD  YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 
Sbjct: 1   MGNRPVK--QPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDVSLDDPDLA LLK
Sbjct: 61  LNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Sed0002680 vs. NCBI nr
Match: CBI28268.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGNKPVK  E +EEI+LKIVPPLD AYVRWLARDLERIHGFTP+NPRAVKPPDHYIE+M 
Sbjct: 105 MGNKPVK--EEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMR 164

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDV+LDDPDLAHL K
Sbjct: 165 LNGWLDVNLDDPDLAHLFK 181

[Close]
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 73/80 (91.25%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 32  MGNKPVKPQE-PREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 91
           MGNKPVK QE  REEI+LKIVPPLD AYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 92  HLNGWLDVSLDDPDLAHLLK 111
            LNGWLDVSLDDPDLAHL K
Sbjct: 61  RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGNKPVK QE REEI LKIVPPLD AYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M 
Sbjct: 1   MGNKPVK-QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMR 60

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDV LDDPDLAHL K
Sbjct: 61  LNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 70/79 (88.61%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGNKPVK QE REEI LKIVPPLD AYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M 
Sbjct: 1   MGNKPVK-QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMR 60

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDV LDDPDLAHL K
Sbjct: 61  LNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMH 91
           MGN+PVK  +P+EE++LKIVPPLD  YVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 
Sbjct: 1   MGNRPVK--QPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMR 60

Query: 92  LNGWLDVSLDDPDLAHLLK 111
           LNGWLDVSLDDPDLA LLK
Sbjct: 61  LNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match: A0A061GNT1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 78/113 (69.03%), Postives = 85/113 (75.22%), Query Frame = 0 

Query: 1   MQVKKLRLAEH-----STSLLTRLSLSPNRGAAKPYMGNKPVKPQEPREEIYLKIVPPLD 60
           + V ++ LA H     STSLL  ++           MGNKPVK QE REEI LKIVPPLD
Sbjct: 33  LAVSQIALAVHECQLASTSLL--IAKLKRHWLGSLIMGNKPVK-QEQREEILLKIVPPLD 92

Query: 61  PAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMHLNGWLDVSLDDPDLAHL 109
            AYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M LNGWLDV LDDPDLAHL
Sbjct: 93  QAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYMRLNGWLDVKLDDPDLAHL 142

[Close]
BLAST of Sed0002680 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 6.3e-28
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 91
           MGNK    +E REEI+LKIVPPLD  ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1   MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 92  HLNGWLDVSLDDPDLAHLLK 111
            LNG LDV LDDPDLAHL K
Sbjct: 61  RLNGSLDVDLDDPDLAHLFK 80

[Close]
BLAST of Sed0002680 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 6.3e-28
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 0 

Query: 32  MGNKPVKPQEPREEIYLKIVPPLDPAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEFM 91
           MGNK    +E REEI+LKIVPPLD  ++RWLARDL+R+HGF P+ N RA+ PPD YIEFM
Sbjct: 1   MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 92  HLNGWLDVSLDDPDLAHLLK 111
            LNG LDV LDDPDLAHL K
Sbjct: 61  RLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:
BLAST of Sed0002680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152955.12.5e-3491.25uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha... [more]
XP_021278844.14.6e-3388.61uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte... [more]
XP_038901668.17.9e-3387.50uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara... [more]
KAA0061729.11.3e-3286.08uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa][more]
CBI28268.32.3e-3286.08unnamed protein product, partial [Vitis vinifera][more]
BLAST of Sed0002680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0002680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJ991.2e-3491.25uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A061GZN32.2e-3388.61Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ... [more]
A0A6J0ZWT32.2e-3388.61uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A5A7V7T46.5e-3386.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A061GNT11.1e-3269.03Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1[more]
BLAST of Sed0002680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22210.16.3e-2870.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G22210.26.3e-2870.00unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002680.1Sed0002680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
cellular_component GO:0032153 cell division site
cellular_component GO:0009507 chloroplast
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding