Sed0002675 (gene) Chayote v1

Overview


Name	Sed0002675
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 1580770 .. 1581886 (+)
RNA-Seq Expression	Sed0002675
Synteny	Sed0002675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTAGAGTTTCAGTGATTTGGAGAATTTTGTTTTTCATAATTATGCTTTTAATGGTCTCTAATGTTTCTGCCACAAAATTCCTTGATGACAACATCCCTCTTGAAGATGGATTCATTGTTAAAGTTGGTGAATCTTCATCATTTGGTGAGTATCAACTTCTCTCTGTGATATGTGACTTCGAGTTTGGACGGGATGATAAAAACTTAAGATCGTGTTTGATAATTATTATTATTATTTTTTATCTATTTGTTTTAAAAAATGAAACATATAGATTTCATTGATTTTTTGTCCATCTGTTACCATATATGTTTTGAAATCTATAAAAACAGTTTGTACAATTTCTTTCTGCTTTTGGAAATTAACTAAGAATCCAAATCATTCTTTGAGAGATAAAAATTATTGTACACAAATTAAAAGGTTTTTTTTAGAACTAATGGAGTTCATAGCTTTTAGTTTGCATGATCAATAATTTGTTCATGATGAGCAAACAAAGTTGTCCCACATTTCTTAGATAAGAGAAAAATCTTGTGTATATAAAGAGGAGACAACACTTCCATTGATATAAAGTATCGAGAGATGCCAAAAAATAAAGTCATTAGGTGTGATTCTCAAAGTAGACACTTCATATCAATGTGAATGTTTGTTGTTTTTCGTTGTCCCTAACAAATGGTATCAGAGCTAAGGGTCTTCACTTAGCGATGTGTGTAAAGACTCTCAATATAGAACAAAGGAGGGACGAGTCTCATATGGCTCGATGTACTCAACAACACCTCCATTGATATGTGAGGCTTTTTGGCTAAAAAACAAAACCATGAGAGGTGATTCAAAGTGGAAAATATCATATTAATGTAGAGGTTCGTGGTCGTTCGTTATGTGTAACTGTTCATAATTTTATTTTTTGTAATTAAAATTAAGAATGTTGTCTATGTTTATGTACTCCAAAAATAGACCATGTGTTGAAGATATATATCATTTTTACTTTAAATATAATTTTATTTACTTTATGCTTTGATTTCAGATAACTTGGAGAGCGAGGTGGAAAATAAATCTGATGATTTCTTAAAATCGCACGCTAGCAATGACAGACCTCGAGGTGGAAACTACTAA

mRNA sequence

ATGGCTTCCATTAGAGTTTCAGTGATTTGGAGAATTTTGTTTTTCATAATTATGCTTTTAATGGTCTCTAATGTTTCTGCCACAAAATTCCTTGATGACAACATCCCTCTTGAAGATGGATTCATTGTTAAAGTTGGTGAATCTTCATCATTTGATAACTTGGAGAGCGAGGTGGAAAATAAATCTGATGATTTCTTAAAATCGCACGCTAGCAATGACAGACCTCGAGGTGGAAACTACTAA

Coding sequence (CDS)

ATGGCTTCCATTAGAGTTTCAGTGATTTGGAGAATTTTGTTTTTCATAATTATGCTTTTAATGGTCTCTAATGTTTCTGCCACAAAATTCCTTGATGACAACATCCCTCTTGAAGATGGATTCATTGTTAAAGTTGGTGAATCTTCATCATTTGATAACTTGGAGAGCGAGGTGGAAAATAAATCTGATGATTTCTTAAAATCGCACGCTAGCAATGACAGACCTCGAGGTGGAAACTACTAA

Protein sequence

MASIRVSVIWRILFFIIMLLMVSNVSATKFLDDNIPLEDGFIVKVGESSSFDNLESEVENKSDDFLKSHASNDRPRGGNY

Homology

[Close]

BLAST of Sed0002675 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-16
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MASIRVSVIWRILFFIIMLLMVSNVSATKFLDDNIPLEDGFIVKVGESSSFDNLESEVEN 60
          MAS  VSV WR +FFI MLLM SNVS+ K LD NIP+EDGF V++G SS F  LE E+E 
Sbjct: 1  MASTNVSVSWRAVFFIAMLLMASNVSSRKLLDANIPVEDGFNVEIGASSFFYELEGELEK 60

Query: 61 KSDDFLKSHASNDRPRGGNY 81
          + + F+KSH  ND PRGGNY
Sbjct: 61 RFESFIKSHTDNDVPRGGNY 80

[Close]

BLAST of Sed0002675 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-09
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASIRVSVIWRILFFIIMLLMVS----NVSATKFLDDNIPLEDGFIVKVGESSSFDNLES 60
          MAS RVS+I  ++FFIIMLL+ S    NVSA KFLD N PL+D F +++  SS F  ++ 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EVENKSDDFLKSHASNDRPRGGNY 81
          E++ + +D LK+   ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of Sed0002675 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MASIRVSVIWRILFFIIMLLMVS----NVSATKFLDDNIP-LEDGFIVKVGESSSFDNLE 60
          MAS RVS+I  +LFFIIML + S    N SA KFLD N P L+D F +++G SS F  LE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 SEVENKSDDFLKSHASNDRPRGGNY 81
           E++ + +D LK+   ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of Sed0002675 vs. ExPASy TrEMBL
Match: A0A0A0KW84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1  MASIRVSVIWRILFFIIMLLMVS----NVSATKFLDDNIPLEDGFIVKVGESSSFDNLES 60
          MAS RVS+I  ++FFIIMLL+ S    NVSA KFLD N PL+D F +++  SS F  ++ 
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EVENKSDDFLKSHASNDRPRGGNY 81
          E++ + +D LK+   ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of Sed0002675 vs. ExPASy TrEMBL
Match: A0A0A0KU24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1  MASIRVSVIWRILFFIIMLLMVS----NVSATKFLDDNIP-LEDGFIVKVGESSSFDNLE 60
          MAS RVS+I  +LFFIIML + S    N SA KFLD N P L+D F +++G SS F  LE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 SEVENKSDDFLKSHASNDRPRGGNY 81
           E++ + +D LK+   ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:

BLAST of Sed0002675 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600181.1	4.9e-16	62.50	hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53134.1	3.4e-09	51.19	hypothetical protein Csa_015383 [Cucumis sativus]	[more]
KGN53135.1	2.2e-08	52.94	hypothetical protein Csa_014652 [Cucumis sativus]	[more]

BLAST of Sed0002675 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW84	1.6e-09	51.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1	[more]
A0A0A0KU24	1.1e-08	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1	[more]

BLAST of Sed0002675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002675.1	Sed0002675.1	mRNA