Sed0002638 (gene) Chayote v1

Overview


Name	Sed0002638
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ras-related protein Rab-18
Location	LG05: 46127579 .. 46132270 (-)
RNA-Seq Expression	Sed0002638
Synteny	Sed0002638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTTGTGGTTGCTTGGTGGATGATTGATGAATCAGCGTGAGTTGATTCCCGAGTTAAGGGCAGGATGGGTAGAGGAGTCGCCATTTTGAATCGAAATTCCATTGTTACCAAACCAAAGCATCATCAATAAGTTCTTCCCCTTTTCCCCCCCCCCTCAATGCAACTGCACCATATCATTTCATTTTGGTATTAAATCTCATCCCATTCTATGTTCATTTTCGTTATGATATTCATTCGATTCCGTTTCTGGCCCCGATTTCCCCCCTTTCATCTTCTGTTTTGATTTTATATATGGATCCCCTCTTTGATTAGATCCGTGATTTGGAAGCGATCTTGTTTTTTTTTTTCTCTATAAATCGTTGATTGGGCTGGAGCCATTGGAGGGCGGAGTTGATGGATTCCGCGTCCAATCAAACCGACTTTGATTACTTGTTCAAATTGCTGATGATTGGGGATTCCGGAGTTGGCAAAAGCAGTCTCCTCTTGAGTTTCACTTCCGACAGCTTCGAGGATCTCTCCCCTACAATCGGTGACATCTCTTTCTAACAACTGTTTCTCGATTTTCTTTTTCATTTTTTGATTTTGTGGGATCTCAATCATTTTGCTGAAAATGAGCCAAGACGTTGGTTTTTCATTTTAAGGAAAATGTTGAAAGATAATGAAATGCTACTGCTGAAGTTTCACTTTTTTACCTTCGATTCAGATCTCTTAACCCTTTTTTTTTTTTTTTTAATCAGCAAGAGCAGAATGAAGCTCTAGACAGTCAATTCTAATGTCATTCATAGAAAAAAATTAAGGAAATTTTAGCTAAGCTTAAATTAAGGAAATTTGTCCTGCAGTTATGTACGCTCTGTTAATATGTGTGTGTGTGTGTTCATCATGTCCCTGTGGGGTTACTTGATCTTCCTTGCTATGGCTTGATAACCAACCATCAGAGAATTAGAAATCAATTCTACTTAATTGATTGTTAATCTTTGTGCACAGGCGTGGATTTTAAGGTTAAGTATGTTAATGCTGGCGGTAAGAAGCTGAAGCTTGCAATTTGGGATACAGGTAATTAAGCTTGCCTATATACATCATTTTCGTAGAGTTCTTCTATTCGTTCTTCTTCCTCCATTTTCTTTTTTGAGACAGAATCTGTTCTCTTTCTCACTCGTGCAAGATACAAGTTTTTGTAAAGAAGCATGGAATGGATAAGTACAACTATGAAGAGTAGGAAGCTGGATAGAATGCTAAATTATAAATACATTGTGGCTTGGCCATTTGCATACGTTGTTCCTTGCTCAGCACCGCAAAAGTTGATCACTTCACGTCCTTATCTTGAACAGCATTAAGTGCTGGAAACTAGCAGGGGAAATCCATGCAGTACTCCATGATATTCCATGCACGCTTTTACTTGTATAGACTGTAGAATTTAGAAATGTCTAATTTTAGGCCTTGTACTATCAATAATTTTAGGCCTTGTACTACCATCCATGGAAACTAGTAGGAAATCCATGCGGTACTCCATGGTAATAAAATTAAGGTTAAAATACCATTTTGGTCTCTAGACTATGAATTTCTTTAACTTTCAAATGTCTAATTTTAGGCCTTGTACTATCAATAAATCATAAAATAAATCAGTTAAAGTTAATTTTTTTTACCACAGTTGGTTAGAAAGTAATGAAAATTTTCATTTAATAAAAGACATCATGTGAATATGTTTCCAAAATTTACGAGGGAAAATGTCTCCAAGGGGTAGCGTGGTGGTCAAAGGCTTGGACTTTGAAGGTGTGCTCCCCTCAAGATTCCAAGTTCAAGACTCACTTGTAACATTAATACTACAGATCTGTTTCTAGGAATTCTATAAAGTCTAACTCAATGTTCAATCACACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTATGGGTGCGTTATATCTCTTTTTTATGTGATTGTTTTAAGGATTGAACTGTATCTTACCATTACCTTAACGAAGTATTGAACTTCTAAAAATAAAGAGAAGTAATATCATAGACGTGTTTAGTTCAAACAGTATTCGAGATTATATCGAATTGTGACTTATTCTCTTGTTTGGCTGTGCAATATTTTGTAATTGCTTTTTATCTTGTTATCTTAATGTTGATTATGACATAAAAGGTAACTGTGACAGTTTATGATGTAACACGGAGAGAAACATTTACAAACCTATCTGAGGTATGGGCGAGGGAAGTAGACTTGTATTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGGTATTTGTTTTCAACTTCCATTTAAAATTACCCGTACGTTCCATTTTGTGTAGATGTTGATTAATTGATCAAATGTATGGTGAATAGAATTTCACATGCCCAAGGAATTTTTTCAGGTTAATTACTGATAATAGTGTGGTAATTTAGGGCCGATTAATTGAGTTATTAATAGGCAAGCTGTTTCCTTGTGGGTTTGTCAGGTATCCAGGCTGTTATTTACAATGTTATTAATAGTGAGATCCTTGTATACTAGTCATTCGAAGCACGAGATAGCTGATTCAAGACATTTCAATACCTTAAACAACTTAATTTTTTTACTCACAAAGATAACATTCGCTAAAATAAAAGGTTAATACTATAGTTAAATCTTATGTATGTTTTGTATATATTCTTAGTTAAACTTCATTTCTTTCCATGAAATGAAGATTAATAGTTAAGTATCATGTATGTTTTATATGTAATTCTTGGGTAAAACTTCATTTATATCCATAAAAGTTTTTTTATTCTGTACACACACACACACATATATATATATGAATTTTTTTGTTTTTTATATAGTGCGCCTTAAGTAAAAAGGCCCGCGCCTTTTGGTGTTCCTCAAGCCCCAAGCCTTAATGTTTCTTGGGTTTTTTATTCAAAAGCTTAGAACAGTGTCAAGGTTTCTGTTGAATTATGTTAAACCACCAATCAACCCAAAAATTTAAGTTGGTGGGTTGGAGTAAATTTAATTATATCAACCAACACTCCCCCTTACTTGTGGGCTTTGATATTTGAGAAATGCCCTACAAGTGGAATTTAATTTTAATTGGGGAGGAAATGACTTGACAGGGACTCGAACTCAGGACCTCCTGCTTTGATAACATGTTGAATTATGTTAAATCATCAATCAACCCAAAAGCTTAAGCTTGTGGATTGGAGTAAATTTAATTATATCAATCAACCGTTTCTTTCCTTGATGCAAAAGTGCCTAGGCAACTCAAATGCAAATGAAATCTAGCCTGTTCGAGAGGATTGACTCGTACTCCTAATGCATGTGACTCAAGCTAATTTCACTTCTACAAAATATACCGAACTTGTACTCCTAATTGCGAAGGGGTGTGTGTTATTTTATGGGGATTTTGGGATGAGATAATGATAAAATCTTTCGAGGAATGAAGTCTCTAGGTGATGCCTGGTCCCTTATTAGGTTCTATGGTTCTCTTTGGGCCTTCATGGCTAAAACTGATTATTCTCTGGGTCTTATTAATGTTGATTGGAGGTCGTTTGGGTAGGTTGCCTCCTTTAGTACCCTTTTATATATATATATATATATATATATATATATATATATACATACATAAACTGTGGGAGGAGATTCATTTCCATTTTTTCCCTTCTTAGTATAGCATATTATTTGAGACCTAAGCAAGTTGCCTGGAGTTATGAACTTGAGATCGGAAATTCACTTCCAAATGAATTCCAAGGTTGTTTAAGTTAGAAGGAAGAAATGAATTCAAGGTTGCTTGGAACAGTAATAGTTGCTTACTTATGGATTTTGGTTTAGTAAGACTCTTACCCTTCTCATATTGTTCTTGTCTGCCTGCATCCTACTTATTTCTATCTGGATATTTCTTTCCTCAGGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGACTTGGCCAGGGAGTATGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTAGAGTTAATGTACAACAATGCTTTGAAGAACTTGTTCTAAAGGTAAGAATATCAATTTAGCACTAGTTTTAGTTTATCTTTTGGTCAAAGGATTCATAATTGATTTATGACCATCAGGAACGTGTCATTTTCCCTGTTGTAACAATCACATTTCTGAGTTGCTAGGTATTAGAAAAAAGTTCGAAACCTTTTAAAATGTCTAGTAATGATCAATGATTATACTCTTTAGTCTCAAAAAAGAAAGATTATACTCCTTTTTTATCATCATTTTGAAATTTTGAATTATCCTGTGAACTTACTGGATTCTGCCTGAACATTCTTATATGCAGATTCTTGATACGCCCAGCCTTTTATCTGAAGGATCTAAAGGGGTGCGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGGTGGATCTACGAGCGGTTGTTGCTGAAGTTGATTCATTGTCTCTAACAACATTTGCTGGTTATTTTTCAAACTACTGTAAAACTAAAGCAGAAAAGCGTGGTGTTACAAGTTTATTATTTCTCTCACAAATTATGTTACAAATAGAAGGTGTTCTTGTCTTGTTGCTGGCTTTCTTGTATAGGGAAAAGTTGAAAATGGAAATATCAGATACATGATGATGATTTCAAATCTTTCTTGTTTTAATTTATTCGCTTTTCTCAGAA

mRNA sequence

GATTTTGTGGTTGCTTGGTGGATGATTGATGAATCAGCGTGAGTTGATTCCCGAGTTAAGGGCAGGATGGGTAGAGGAGTCGCCATTTTGAATCGAAATTCCATTGTTACCAAACCAAAGCATCATCAATAAGTTCTTCCCCTTTTCCCCCCCCCCTCAATGCAACTGCACCATATCATTTCATTTTGATCCGTGATTTGGAAGCGATCTTGTTTTTTTTTTTCTCTATAAATCGTTGATTGGGCTGGAGCCATTGGAGGGCGGAGTTGATGGATTCCGCGTCCAATCAAACCGACTTTGATTACTTGTTCAAATTGCTGATGATTGGGGATTCCGGAGTTGGCAAAAGCAGTCTCCTCTTGAGTTTCACTTCCGACAGCTTCGAGGATCTCTCCCCTACAATCGGCGTGGATTTTAAGGTTAAGTATGTTAATGCTGGCGGTAAGAAGCTGAAGCTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTATGGTTTATGATGTAACACGGAGAGAAACATTTACAAACCTATCTGAGGTATGGGCGAGGGAAGTAGACTTGTATTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGACTTGGCCAGGGAGTATGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTAGAGTTAATGTACAACAATGCTTTGAAGAACTTGTTCTAAAGATTCTTGATACGCCCAGCCTTTTATCTGAAGGATCTAAAGGGGTGCGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGGTGGATCTACGAGCGGTTGTTGCTGAAGTTGATTCATTGTCTCTAACAACATTTGCTGGTTATTTTTCAAACTACTGTAAAACTAAAGCAGAAAAGCGTGGTGTTACAAGTTTATTATTTCTCTCACAAATTATGTTACAAATAGAAGGTGTTCTTGTCTTGTTGCTGGCTTTCTTGTATAGGGAAAAGTTGAAAATGGAAATATCAGATACATGATGATGATTTCAAATCTTTCTTGTTTTAATTTATTCGCTTTTCTCAGAA

Coding sequence (CDS)

ATGGATTCCGCGTCCAATCAAACCGACTTTGATTACTTGTTCAAATTGCTGATGATTGGGGATTCCGGAGTTGGCAAAAGCAGTCTCCTCTTGAGTTTCACTTCCGACAGCTTCGAGGATCTCTCCCCTACAATCGGCGTGGATTTTAAGGTTAAGTATGTTAATGCTGGCGGTAAGAAGCTGAAGCTTGCAATTTGGGATACAGCTGGGCAGGAGAGATTCAGAACATTGACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTATGGTTTATGATGTAACACGGAGAGAAACATTTACAAACCTATCTGAGGTATGGGCGAGGGAAGTAGACTTGTATTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGATAAGGAAAGTTATAGAACAGTAACAAAGAAAGAGGGAATTGACTTGGCCAGGGAGTATGGTTGTCTTTTTACAGAATGCAGTGCCAAAACTAGAGTTAATGTACAACAATGCTTTGAAGAACTTGTTCTAAAGATTCTTGATACGCCCAGCCTTTTATCTGAAGGATCTAAAGGGGTGCGAAAGAACATCTTCAAGGAAAAGCCTCCACAGCCTGGTGGATCTACGAGCGGTTGTTGCTGA

Protein sequence

MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDCIKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPSLLSEGSKGVRKNIFKEKPPQPGGSTSGCC

Homology

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BLAST of Sed0002638 vs. NCBI nr
Match: XP_022156664.1 (ras-related protein RABC1-like [Momordica charantia])

HSP 1 Score: 404.1 bits (1037), Expect = 7.5e-109
Identity = 197/209 (94.26%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS+SNQ++FDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSSSNQSEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQP  STS CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Sed0002638 vs. NCBI nr
Match: XP_038901438.1 (ras-related protein RABC1-like [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 9.9e-109
Identity = 197/209 (94.26%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFT+DSFEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTTDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWARE+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES+RTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQP  STS CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Sed0002638 vs. NCBI nr
Match: XP_004147350.1 (ras-related protein RABC1 [Cucumis sativus] >KGN62201.1 hypothetical protein Csa_016939 [Cucumis sativus])

HSP 1 Score: 402.1 bits (1032), Expect = 2.9e-108
Identity = 196/209 (93.78%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQ   STS CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASTSSCC 209

[Close]

BLAST of Sed0002638 vs. NCBI nr
Match: XP_022971628.1 (ras-related protein RABC1-like [Cucurbita maxima])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYV AGGK+
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES+RTVTKKEGID+ARE GCLFTECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVRKNIFKEKPPQP  S S CC
Sbjct: 181 LLSEGSKGVRKNIFKEKPPQPDASASSCC 209

[Close]

BLAST of Sed0002638 vs. NCBI nr
Match: XP_008460888.1 (PREDICTED: ras-related protein RABC1-like [Cucumis melo] >KAA0040756.1 ras-related protein RABC1-like [Cucumis melo var. makuwa] >TYK02071.1 ras-related protein RABC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 395.6 bits (1015), Expect = 2.7e-106
Identity = 193/209 (92.34%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWA+E+DLYSTN DC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNPDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQ   S S CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASASSCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.4e-95
Identity = 168/209 (80.38%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q +FDYLFK+L+IGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+  G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES R V+KKEGID AREYGCLF ECSAKTRVNV+QCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           L +EGS G +KNIFK+ P Q   ++S  C
Sbjct: 181 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.7e-83
Identity = 144/209 (68.90%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q+ +D  FK+L+IGDSGVGKSSLL+SF S S EDL+PTIGVDFK+K +  GGK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRRETFTNL +VW +E++LYSTNQ+C
Sbjct: 61  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           ++MLVGNKVD+ES R V+++EGI LA+E  C+F ECSA+TR NV+QCFEEL LKI++ PS
Sbjct: 121 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LL EGS  V++NI K+KP     + SGCC
Sbjct: 181 LLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-73
Identity = 130/191 (68.06%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q+ +D  FK+L+IGDSGVGKSSLLLSF S S EDL+PTIGVDFK+K +   GK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+RETF NL+++WA+E++LYSTN DC
Sbjct: 61  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVD+ES R V+++EG+ LA++  CLF ECSA+TR NV  CFEEL LKI++ PS
Sbjct: 121 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 180

Query: 181 LLSEGSKGVRK 192
           LL EGS  V++
Sbjct: 181 LLEEGSSSVKR 191

[Close]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.7e-58
Identity = 119/200 (59.50%), Postives = 141/200 (70.50%), Query Frame = 0


Query: 11  DYLFKLLMIGDSGVGKSSLLLSFTSDSFED-LSPTIGVDFKVKYVNAGGKKLKLAIWDTA 70
           DY FK+L++GDSGVGKS +L  FTS  FE+  + TIGVDFKVKY+ A GK+ KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 71  GQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDCIKMLVGNKV 130
           GQERFRTLTSSYYRGAQGII VYDVTRR+TF +L   W RE D+YST +  IKM+V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 131 DKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPSLLSEGSKGV 190
           D  + R V+ +EG D AR +GCLF E SA+  + V Q FEEL+LKILDTP LL   + G 
Sbjct: 127 DLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAVGG 186

Query: 191 RKNIFKEKPPQPGGSTSGCC 210
            K         P G  +G C
Sbjct: 187 IK-----LGAVPTGQQAGVC 201

[Close]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot
Match: Q5ZLG1 (Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.5e-54
Identity = 111/196 (56.63%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 15  KLLMIGDSGVGKSSLLLSFTSDSFE-DLSPTIGVDFKVKYVNAGGKKLKLAIWDTAGQER 74
           K+L+IG+SGVGKSSLLL FT D+F+ +L+ TIGVDFKVK ++  G K KLAIWDTAGQER
Sbjct: 10  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query: 75  FRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDCIKMLVGNKVDKES 134
           FRTLT SYYRGAQG+I+VYDVTRR+TF  L   W  E++ Y T  D +KMLVGNK+DKE+
Sbjct: 70  FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVKMLVGNKIDKEN 129

Query: 135 YRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPSLLSEGSKGVRKNI 194
            R V + EG+  AR++  LF E SAKT   VQ  FEELV KI+ TP L    S+     +
Sbjct: 130 -REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGVKL 189

Query: 195 FKEKPPQPGGSTSGCC 210
             ++    GG+  G C
Sbjct: 190 SNKEEGHGGGACGGYC 203

[Close]

BLAST of Sed0002638 vs. ExPASy TrEMBL
Match: A0A6J1DU73 (ras-related protein RABC1-like OS=Momordica charantia OX=3673 GN=LOC111023514 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.7e-109
Identity = 197/209 (94.26%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS+SNQ++FDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSSSNQSEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQP  STS CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQPDASTSSCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy TrEMBL
Match: A0A0A0LQC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334520 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 196/209 (93.78%), Postives = 203/209 (97.13%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQ   STS CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASTSSCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy TrEMBL
Match: A0A6J1I7F2 (ras-related protein RABC1-like OS=Cucurbita maxima OX=3661 GN=LOC111470311 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYV AGGK+
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVTAGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES+RTVTKKEGID+ARE GCLFTECSAKTRVNVQQCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESFRTVTKKEGIDMARECGCLFTECSAKTRVNVQQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVRKNIFKEKPPQP  S S CC
Sbjct: 181 LLSEGSKGVRKNIFKEKPPQPDASASSCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy TrEMBL
Match: A0A5D3BQN6 (Ras-related protein RABC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00560 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 193/209 (92.34%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWA+E+DLYSTN DC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNPDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQ   S S CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASASSCC 209

[Close]

BLAST of Sed0002638 vs. ExPASy TrEMBL
Match: A0A1S3CDH6 (ras-related protein RABC1-like OS=Cucumis melo OX=3656 GN=LOC103499629 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 193/209 (92.34%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           MDS SNQT+FDYLFKLLMIGDSGVGKSSLLLSFTSD+FEDLSPTIGVDFKVKYV AGGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLSEVWA+E+DLYSTN DC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNPDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKESYRTVTKKEGID+AREYGCLF ECSAKTRVNVQQCFEELVLKILDTPS
Sbjct: 121 IKMLVGNKVDKESYRTVTKKEGIDMAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LLSEGSKGVR+NIFKEKPPQ   S S CC
Sbjct: 181 LLSEGSKGVRRNIFKEKPPQSDASASSCC 209

[Close]

BLAST of Sed0002638 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 348.2 bits (892), Expect = 4.6e-96
Identity = 168/209 (80.38%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q +FDYLFK+L+IGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+  G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES R V+KKEGID AREYGCLF ECSAKTRVNV+QCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           L +EGS G +KNIFK+ P Q   ++S  C
Sbjct: 181 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Sed0002638 vs. TAIR 10
Match: AT1G43890.2 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 348.2 bits (892), Expect = 4.6e-96
Identity = 168/209 (80.38%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q +FDYLFK+L+IGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+  G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES R V+KKEGID AREYGCLF ECSAKTRVNV+QCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           L +EGS G +KNIFK+ P Q   ++S  C
Sbjct: 181 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Sed0002638 vs. TAIR 10
Match: AT1G43890.3 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 348.2 bits (892), Expect = 4.6e-96
Identity = 168/209 (80.38%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q +FDYLFK+L+IGDSGVGKSSLLLSFTS++F+DLSPTIGVDFKVKY+  G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNLS++WA+E+DLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVDKES R V+KKEGID AREYGCLF ECSAKTRVNV+QCFEELVLKIL+TPS
Sbjct: 121 IKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           L +EGS G +KNIFK+ P Q   ++S  C
Sbjct: 181 LTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Sed0002638 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 308.5 bits (789), Expect = 4.0e-84
Identity = 144/209 (68.90%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q+ +D  FK+L+IGDSGVGKSSLL+SF S S EDL+PTIGVDFK+K +  GGK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRRETFTNL +VW +E++LYSTNQ+C
Sbjct: 61  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           ++MLVGNKVD+ES R V+++EGI LA+E  C+F ECSA+TR NV+QCFEEL LKI++ PS
Sbjct: 121 VRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPS 180

Query: 181 LLSEGSKGVRKNIFKEKPPQPGGSTSGCC 210
           LL EGS  V++NI K+KP     + SGCC
Sbjct: 181 LLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Sed0002638 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 277.7 bits (709), Expect = 7.6e-75
Identity = 130/191 (68.06%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MDSASNQTDFDYLFKLLMIGDSGVGKSSLLLSFTSDSFEDLSPTIGVDFKVKYVNAGGKK 60
           M S+S Q+ +D  FK+L+IGDSGVGKSSLLLSF S S EDL+PTIGVDFK+K +   GK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEVWAREVDLYSTNQDC 120
           LKL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+RETF NL+++WA+E++LYSTN DC
Sbjct: 61  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query: 121 IKMLVGNKVDKESYRTVTKKEGIDLAREYGCLFTECSAKTRVNVQQCFEELVLKILDTPS 180
           IKMLVGNKVD+ES R V+++EG+ LA++  CLF ECSA+TR NV  CFEEL LKI++ PS
Sbjct: 121 IKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVPS 180

Query: 181 LLSEGSKGVRK 192
           LL EGS  V++
Sbjct: 181 LLEEGSSSVKR 191

The following BLAST results are available for this feature:

BLAST of Sed0002638 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156664.1	7.5e-109	94.26	ras-related protein RABC1-like [Momordica charantia]	[more]
XP_038901438.1	9.9e-109	94.26	ras-related protein RABC1-like [Benincasa hispida]	[more]
XP_004147350.1	2.9e-108	93.78	ras-related protein RABC1 [Cucumis sativus] >KGN62201.1 hypothetical protein Csa...	[more]
XP_022971628.1	2.4e-107	93.30	ras-related protein RABC1-like [Cucurbita maxima]	[more]
XP_008460888.1	2.7e-106	92.34	PREDICTED: ras-related protein RABC1-like [Cucumis melo] >KAA0040756.1 ras-relat...	[more]

BLAST of Sed0002638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23657	6.4e-95	80.38	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
O49841	5.7e-83	68.90	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	1.1e-73	68.06	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
P36862	3.7e-58	59.50	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q5ZLG1	5.5e-54	56.63	Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1	[more]

BLAST of Sed0002638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU73	3.7e-109	94.26	ras-related protein RABC1-like OS=Momordica charantia OX=3673 GN=LOC111023514 PE...	[more]
A0A0A0LQC6	1.4e-108	93.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334520 PE=4 SV=1	[more]
A0A6J1I7F2	1.2e-107	93.30	ras-related protein RABC1-like OS=Cucurbita maxima OX=3661 GN=LOC111470311 PE=4 ...	[more]
A0A5D3BQN6	1.3e-106	92.34	Ras-related protein RABC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CDH6	1.3e-106	92.34	ras-related protein RABC1-like OS=Cucumis melo OX=3656 GN=LOC103499629 PE=4 SV=1	[more]

BLAST of Sed0002638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43890.1	4.6e-96	80.38	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.2	4.6e-96	80.38	RAB GTPASE HOMOLOG B18	[more]
AT1G43890.3	4.6e-96	80.38	RAB GTPASE HOMOLOG B18	[more]
AT5G03530.1	4.0e-84	68.90	RAB GTPase homolog C2A	[more]
AT3G09910.1	7.6e-75	68.06	RAB GTPase homolog C2B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 90..112 score: 40.38 coord: 55..68 score: 42.87
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 1..115 e-value: 1.6E-9 score: 20.5
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 2..115 e-value: 3.1E-36 score: 136.4
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 4..146
None	No IPR available	PANTHER	PTHR24073:SF1000	SMALL MONOMERIC GTPASE-RELATED	coord: 4..146
None	No IPR available	PROSITE	PS51419	RAB	coord: 1..146 score: 21.533812
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 2..115 e-value: 1.4E-5 score: -46.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 5..113 e-value: 3.6E-33 score: 114.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..146 score: 14.638307
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 5..107 e-value: 8.0E-14 score: 49.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..125 e-value: 1.6E-38 score: 133.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 5..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002638.1	Sed0002638.1	mRNA
Sed0002638.2	Sed0002638.2	mRNA
Sed0002638.3	Sed0002638.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding