Sed0002611 (gene) Chayote v1

Overview


Name	Sed0002611
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ZnMc domain-containing protein
Location	LG03: 987744 .. 989212 (-)
RNA-Seq Expression	Sed0002611
Synteny	Sed0002611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAACGTCCATGCATACAAATCGACATGTCGAACTCGAAAGCTCAACGAATGATGAAGATGGTATGGTTAGGCATTGTTATAAGTGTCGTAATTTTGAGGTTCCCTGTTTCGGAAGGATGCTGGGCCGACAACAGCAACATGAACAGCTAATTTCATCTCAAATTCCACAAAGTTTCTCACTATTCATTTTTTCCAGGAAACCCTAAATGGCCGACCCCTTCAAAATACAATTTAACCTTCTCATTCCCTAACGGAATCCCCGCCATAGCTCAAGCTTTCAACAAGTGGGCTTCCCAAACCCCGTTCACGTTTATCCAAGTCCTAATTACTATTTAAATAAGCTAAAATATACTTACATTTTTAAAGTTGATGGTACTCGAAGTTCATATTTTGTTTCTTACTATTCTCAAATAATATGAAAATATGGATTACCGGTAAATAATGAAACTACCATGTTACTGACCATTTGATACTGATGAGATACTGATGACGATATTTTTAATTTATTACTTTTTTATTAAAAAAAACAAAATTTATGTTAAGACCACTTTTAAATATTTTTAGTGAGTTTAAGGAGCAAAAGGACTCAAATCTCAACATTTATGAATTGAAATTAAAGTTTAAAATTTTAAGCCCTTCCTTGATAAGCATTTTGTTTTTAAAATTTAAGCTTATTTTTTACCATGTGTTTCATCTTTTGTACAATGGGTTCATCTCTCTTCTTAAGAAAGTAGATGAATGTTAATCAAATTTAAAAAACAAAAATAAGTTTTTGAAAGCTATTTTTTTGTTTCTAAATTTTGGTTTGGTTTCCAGCATATTTAAGATAGTTGTTGTAGGCTTAAATTTAAAAAATCAAATGGTTATTTTTTTTTTAAAACAAAAATCAAATGGTTATTAAATGGGGAATTAATGTTTGAAATTAGACTTGAAATTTTAAGAACCAAAATGGAATACCTTTCAAAAGGGTCTAAAATAATATTAGAACCATTTAAATTTTATGAGATTGTCTCTAGATTTTGTTACATATTTTTTAGGATTAGTAAAACGATTCTCAAGAAATTGATCTTGGATTAGAAGATTTATGTCTTTTTTCAAAAAAAAAAAAAAAAAAATTATGGCAGGTCTCCAACAATTCCCCTTCGGACCTCACAATAAGCTTTCAAAGAGGGTCCCATGGGGATGGGGCTCCGTTTGATGGGCCAGGGGGAATCCTAGCCCATGCCTTTGCACCGCAGGACGGCCGGCTTCACTTCGACGCCGATGAAAAGTATTCGATCGTCGCCCTTTCGGGTCATTTTGACCTCGAAAGTGTGGGGATTCATGAGATTGGACACCTTCTCGGGCTTGGTCACAGCAATGTTACTCAGGCTATTATGTACCCCTTCATTAGTTCTGGAACTGTCAAGACCAACCTTGATGCTGATGATGTTAACGGAATGAAGGCTTTGTATAATTTCTGA

mRNA sequence

ATGGAGCAACGTCCATGCATACAAATCGACATGTCGAACTCGAAAGCTCAACGAATGATGAAGATGGTCTCCAACAATTCCCCTTCGGACCTCACAATAAGCTTTCAAAGAGGGTCCCATGGGGATGGGGCTCCGTTTGATGGGCCAGGGGGAATCCTAGCCCATGCCTTTGCACCGCAGGACGGCCGGCTTCACTTCGACGCCGATGAAAAGTATTCGATCGTCGCCCTTTCGGGTCATTTTGACCTCGAAAGTGTGGGGATTCATGAGATTGGACACCTTCTCGGGCTTGGTCACAGCAATGTTACTCAGGCTATTATGTACCCCTTCATTAGTTCTGGAACTGTCAAGACCAACCTTGATGCTGATGATGTTAACGGAATGAAGGCTTTGTATAATTTCTGA

Coding sequence (CDS)

ATGGAGCAACGTCCATGCATACAAATCGACATGTCGAACTCGAAAGCTCAACGAATGATGAAGATGGTCTCCAACAATTCCCCTTCGGACCTCACAATAAGCTTTCAAAGAGGGTCCCATGGGGATGGGGCTCCGTTTGATGGGCCAGGGGGAATCCTAGCCCATGCCTTTGCACCGCAGGACGGCCGGCTTCACTTCGACGCCGATGAAAAGTATTCGATCGTCGCCCTTTCGGGTCATTTTGACCTCGAAAGTGTGGGGATTCATGAGATTGGACACCTTCTCGGGCTTGGTCACAGCAATGTTACTCAGGCTATTATGTACCCCTTCATTAGTTCTGGAACTGTCAAGACCAACCTTGATGCTGATGATGTTAACGGAATGAAGGCTTTGTATAATTTCTGA

Protein sequence

MEQRPCIQIDMSNSKAQRMMKMVSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF

Homology

[Close]

BLAST of Sed0002611 vs. NCBI nr
Match: XP_022959874.1 (metalloendoproteinase 1-like [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 9.0e-39
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFD 82
           V +++P+D+TI+F R SHGDG PFDGPGG LAHAFAP DGRLHFDAD+ Y I A    FD
Sbjct: 100 VPSSAPADITITFARLSHGDGYPFDGPGGTLAHAFAPTDGRLHFDADDSYVIGAAPNAFD 159

Query: 83  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF 135
           LESV +HE+GH+LGLGHSNV QAIMYP ISSGTVK  L ADD+NG+KALY F
Sbjct: 160 LESVAVHEMGHILGLGHSNVVQAIMYPSISSGTVKKELQADDINGIKALYGF 211

[Close]

BLAST of Sed0002611 vs. NCBI nr
Match: KAG6602460.1 (Metalloendoproteinase 2-MMP, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 9.0e-39
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFD 82
           V +++P+D+TI+F R SHGDG PFDGPGG LAHAFAP DGRLHFDAD+ Y I A    FD
Sbjct: 100 VPSSAPADITITFARLSHGDGYPFDGPGGTLAHAFAPTDGRLHFDADDSYVIGAAPNAFD 159

Query: 83  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF 135
           LESV +HE+GH+LGLGHSNV QAIMYP ISSGTVK  L ADD+NG+KALY F
Sbjct: 160 LESVAVHEMGHILGLGHSNVVQAIMYPSISSGTVKKELQADDINGIKALYGF 211

[Close]

BLAST of Sed0002611 vs. NCBI nr
Match: XP_023544550.1 (metalloendoproteinase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-37
Identity = 78/112 (69.64%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFD 82
           V ++ P+D+TI+F R +HGDG PFDG GG LAHAFAP DGRLHFDAD+ Y I A    FD
Sbjct: 100 VPSSDPADITITFARLNHGDGYPFDGKGGTLAHAFAPTDGRLHFDADDSYVIGAAPNAFD 159

Query: 83  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF 135
           LESV +HE+GH+LGLGHSNV QAIMYP ISSGTVK  L ADD+NG+KALY F
Sbjct: 160 LESVAVHEMGHILGLGHSNVVQAIMYPSISSGTVKKELQADDINGIKALYGF 211

[Close]

BLAST of Sed0002611 vs. NCBI nr
Match: XP_022134258.1 (metalloendoproteinase 3-MMP-like [Momordica charantia])

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 13  NSKAQRMMKMVSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY 72
           +SK +     V+NN  +D+TISFQRG+HGDG PFDGPGG+LAHAFAP DGRLH D D++Y
Sbjct: 92  DSKTKFSFTRVANNVRADITISFQRGNHGDGYPFDGPGGVLAHAFAPTDGRLHLDGDDRY 151

Query: 73  SIVALSGHFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 132
           ++ A+ G+FD  SV +HEIGH++GLGHSN  QAIMYP+I+ G VK  L  DD+NG++ALY
Sbjct: 152 AVGAVPGNFDTSSVVVHEIGHIMGLGHSNDPQAIMYPYINDGVVKATLQQDDLNGIRALY 211

[Close]

BLAST of Sed0002611 vs. NCBI nr
Match: XP_017224741.1 (PREDICTED: metalloendoproteinase 1-like [Daucus carota subsp. sativus] >KZM82817.1 hypothetical protein DCAR_030386 [Daucus carota subsp. sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 25  NNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFDLE 84
           N   SDLTI+F RG HGDG+PFDGPGGILAHAF P DGRLHFDADE++SI A+  + DLE
Sbjct: 236 NFQSSDLTITFYRGDHGDGSPFDGPGGILAHAFYPTDGRLHFDADERFSIGAIPNYIDLE 295

Query: 85  SVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYN 134
           SV +HEIGHLLGL HS V  AIMYP I  G VKTNL  DD+ G+KALYN
Sbjct: 296 SVAVHEIGHLLGLSHSTVQNAIMYPSIPYGVVKTNLQPDDIQGIKALYN 344

[Close]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot
Match: O04529 (Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana OX=3702 GN=2MMP PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.7e-28
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 27  SPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY-------SIVALSG 86
           S SD+TI F  G HGDG PFDG  G LAHAF+P  G+ H DADE +       S ++++ 
Sbjct: 211 STSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADENWVVSGDLDSFLSVTA 270

Query: 87  HFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
             DLESV +HEIGHLLGLGHS+V ++IMYP I++G  K +L  DDV G++ LY
Sbjct: 271 AVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLY 323

[Close]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot
Match: P29136 (Metalloendoproteinase 1 OS=Glycine max OX=3847 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 6.3e-27
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 29  SDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY------SIVALSGHFD 88
           +++ I F   +HGD  PFDGPGGIL HAFAP DGR HFDADE +      +   ++  FD
Sbjct: 192 ANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWVASGDVTKSPVTSAFD 251

Query: 89  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
           LESV +HEIGHLLGLGHS+  +AIMYP I   T K NL  DD++G++ LY
Sbjct: 252 LESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRKLY 301

[Close]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot
Match: Q5XF51 (Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana OX=3702 GN=3MMP PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.1e-26
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSI-------- 82
           V   S SD++I F  G HGDG PFDGP   LAHAF+P  G  H D +E + +        
Sbjct: 211 VERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGEGGDGF 270

Query: 83  VALSGHFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
           +++S   DLESV +HEIGHLLGLGHS+V  +IMYP I +G  K +L  DDV G++ LY
Sbjct: 271 ISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEGVQYLY 328

[Close]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot
Match: Q8GWW6 (Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana OX=3702 GN=4MMP PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-24
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 29  SDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDA--------DEKYSIVALSGH 88
           +D+ I F  G HGDG PFDG  G+LAH F+P++GRLH D         DE+ S VA+   
Sbjct: 188 ADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAETWAVDFDEEKSSVAV--- 247

Query: 89  FDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
            DLESV +HEIGH+LGLGHS+V  A MYP +   + K NL+ DDV G+++LY
Sbjct: 248 -DLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVGVQSLY 295

[Close]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot
Match: O23507 (Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana OX=3702 GN=1MMP PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.0e-24
Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSI-VALSGH- 82
           V + + +DL I F  G HGDG PFDG  G LAHAFAP++GRLH DA E + +   L G  
Sbjct: 204 VDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWIVDDDLKGSS 263

Query: 83  ---FDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
               DLESV  HEIGHLLGLGHS+   A+MYP +   T K +L  DDV G+  LY
Sbjct: 264 EVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAGVLKLY 318

[Close]

BLAST of Sed0002611 vs. ExPASy TrEMBL
Match: A0A6J1H9C5 (metalloendoproteinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460805 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-39
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFD 82
           V +++P+D+TI+F R SHGDG PFDGPGG LAHAFAP DGRLHFDAD+ Y I A    FD
Sbjct: 100 VPSSAPADITITFARLSHGDGYPFDGPGGTLAHAFAPTDGRLHFDADDSYVIGAAPNAFD 159

Query: 83  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF 135
           LESV +HE+GH+LGLGHSNV QAIMYP ISSGTVK  L ADD+NG+KALY F
Sbjct: 160 LESVAVHEMGHILGLGHSNVVQAIMYPSISSGTVKKELQADDINGIKALYGF 211

[Close]

BLAST of Sed0002611 vs. ExPASy TrEMBL
Match: A0A6J1C1I2 (metalloendoproteinase 3-MMP-like OS=Momordica charantia OX=3673 GN=LOC111006559 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.4e-37
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 13  NSKAQRMMKMVSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY 72
           +SK +     V+NN  +D+TISFQRG+HGDG PFDGPGG+LAHAFAP DGRLH D D++Y
Sbjct: 92  DSKTKFSFTRVANNVRADITISFQRGNHGDGYPFDGPGGVLAHAFAPTDGRLHLDGDDRY 151

Query: 73  SIVALSGHFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 132
           ++ A+ G+FD  SV +HEIGH++GLGHSN  QAIMYP+I+ G VK  L  DD+NG++ALY
Sbjct: 152 AVGAVPGNFDTSSVVVHEIGHIMGLGHSNDPQAIMYPYINDGVVKATLQQDDLNGIRALY 211

[Close]

BLAST of Sed0002611 vs. ExPASy TrEMBL
Match: A0A175YHG4 (ZnMc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030386 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.0e-37
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 25  NNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFDLE 84
           N   SDLTI+F RG HGDG+PFDGPGGILAHAF P DGRLHFDADE++SI A+  + DLE
Sbjct: 236 NFQSSDLTITFYRGDHGDGSPFDGPGGILAHAFYPTDGRLHFDADERFSIGAIPNYIDLE 295

Query: 85  SVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYN 134
           SV +HEIGHLLGL HS V  AIMYP I  G VKTNL  DD+ G+KALYN
Sbjct: 296 SVAVHEIGHLLGLSHSTVQNAIMYPSIPYGVVKTNLQPDDIQGIKALYN 344

[Close]

BLAST of Sed0002611 vs. ExPASy TrEMBL
Match: A0A6J1JKI7 (metalloendoproteinase 2-MMP-like OS=Cucurbita maxima OX=3661 GN=LOC111487737 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.1e-37
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFD 82
           V +++P+D+TI+F R +HGDG  FDG GG LAHAFAP DGRLHFDAD+ Y I A  G FD
Sbjct: 100 VPSSAPADITITFARLNHGDGYSFDGKGGTLAHAFAPTDGRLHFDADDPYVIGAAPGAFD 159

Query: 83  LESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYNF 135
           LESV +HE+GH+LGLGHS V QAIMYP ISSGTVK +L ADD+NG+KALY F
Sbjct: 160 LESVAVHEMGHILGLGHSTVPQAIMYPSISSGTVKKDLQADDINGIKALYGF 211

[Close]

BLAST of Sed0002611 vs. ExPASy TrEMBL
Match: A0A175YGL0 (ZnMc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030385 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.9e-36
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 29  SDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSIVALSGHFDLESVGI 88
           SDLT+++ RG HGDG+ FDGPGG+LAHAF P DGRLHFD DE++SI A+  + DLESV +
Sbjct: 244 SDLTVTYYRGDHGDGSAFDGPGGVLAHAFFPTDGRLHFDVDERWSIGAIPNYVDLESVAV 303

Query: 89  HEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALYN 134
           HEIGHLLGLGHS V  AIMYP IS G VKTN  ADDV G+KALYN
Sbjct: 304 HEIGHLLGLGHSTVPDAIMYPSISYGVVKTNFHADDVRGIKALYN 348

[Close]

BLAST of Sed0002611 vs. TAIR 10
Match: AT1G70170.1 (matrix metalloproteinase )

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-29
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 27  SPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY-------SIVALSG 86
           S SD+TI F  G HGDG PFDG  G LAHAF+P  G+ H DADE +       S ++++ 
Sbjct: 211 STSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLDADENWVVSGDLDSFLSVTA 270

Query: 87  HFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
             DLESV +HEIGHLLGLGHS+V ++IMYP I++G  K +L  DDV G++ LY
Sbjct: 271 AVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDLTNDDVEGIQYLY 323

[Close]

BLAST of Sed0002611 vs. TAIR 10
Match: AT1G24140.1 (Matrixin family protein )

HSP 1 Score: 117.9 bits (294), Expect = 6.4e-27
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSI-------- 82
           V   S SD++I F  G HGDG PFDGP   LAHAF+P  G  H D +E + +        
Sbjct: 211 VERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLDGEENWIVSGEGGDGF 270

Query: 83  VALSGHFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
           +++S   DLESV +HEIGHLLGLGHS+V  +IMYP I +G  K +L  DDV G++ LY
Sbjct: 271 ISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVDLTTDDVEGVQYLY 328

[Close]

BLAST of Sed0002611 vs. TAIR 10
Match: AT2G45040.1 (Matrixin family protein )

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-25
Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 29  SDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDA--------DEKYSIVALSGH 88
           +D+ I F  G HGDG PFDG  G+LAH F+P++GRLH D         DE+ S VA+   
Sbjct: 188 ADIKIGFFNGDHGDGEPFDGVLGVLAHTFSPENGRLHLDKAETWAVDFDEEKSSVAV--- 247

Query: 89  FDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
            DLESV +HEIGH+LGLGHS+V  A MYP +   + K NL+ DDV G+++LY
Sbjct: 248 -DLESVAVHEIGHVLGLGHSSVKDAAMYPTLKPRSKKVNLNMDDVVGVQSLY 295

[Close]

BLAST of Sed0002611 vs. TAIR 10
Match: AT4G16640.1 (Matrixin family protein )

HSP 1 Score: 112.1 bits (279), Expect = 3.5e-25
Identity = 61/115 (53.04%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 23  VSNNSPSDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKYSI-VALSGH- 82
           V + + +DL I F  G HGDG PFDG  G LAHAFAP++GRLH DA E + +   L G  
Sbjct: 204 VDDFTTADLKIGFYAGDHGDGLPFDGVLGTLAHAFAPENGRLHLDAAETWIVDDDLKGSS 263

Query: 83  ---FDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
               DLESV  HEIGHLLGLGHS+   A+MYP +   T K +L  DDV G+  LY
Sbjct: 264 EVAVDLESVATHEIGHLLGLGHSSQESAVMYPSLRPRTKKVDLTVDDVAGVLKLY 318

[Close]

BLAST of Sed0002611 vs. TAIR 10
Match: AT1G59970.1 (Matrixin family protein )

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-25
Identity = 57/113 (50.44%), Postives = 70/113 (61.95%), Query Frame = 0


Query: 29  SDLTISFQRGSHGDGAPFDGPGGILAHAFAPQDGRLHFDADEKY---------SIVALSG 88
           +D+ I F  G HGDG PFDG  G LAHA +P  G LH D DE +          I+ ++ 
Sbjct: 201 ADIVIGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLDGDEDWLISNGEISRRILPVTT 260

Query: 89  HFDLESVGIHEIGHLLGLGHSNVTQAIMYPFISSGTVKTNLDADDVNGMKALY 133
             DLESV +HEIGHLLGLGHS+V  AIM+P IS G  K  L  DD+ G++ LY
Sbjct: 261 VVDLESVAVHEIGHLLGLGHSSVEDAIMFPAISGGDRKVELAKDDIEGIQHLY 313

The following BLAST results are available for this feature:

BLAST of Sed0002611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959874.1	9.0e-39	71.43	metalloendoproteinase 1-like [Cucurbita moschata]	[more]
KAG6602460.1	9.0e-39	71.43	Metalloendoproteinase 2-MMP, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023544550.1	2.2e-37	69.64	metalloendoproteinase 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022134258.1	4.9e-37	61.67	metalloendoproteinase 3-MMP-like [Momordica charantia]	[more]
XP_017224741.1	1.4e-36	70.64	PREDICTED: metalloendoproteinase 1-like [Daucus carota subsp. sativus] >KZM82817...	[more]

BLAST of Sed0002611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04529	9.7e-28	53.98	Metalloendoproteinase 2-MMP OS=Arabidopsis thaliana OX=3702 GN=2MMP PE=1 SV=1	[more]
P29136	6.3e-27	55.45	Metalloendoproteinase 1 OS=Glycine max OX=3847 PE=1 SV=2	[more]
Q5XF51	9.1e-26	50.00	Metalloendoproteinase 3-MMP OS=Arabidopsis thaliana OX=3702 GN=3MMP PE=1 SV=1	[more]
Q8GWW6	1.7e-24	51.79	Metalloendoproteinase 4-MMP OS=Arabidopsis thaliana OX=3702 GN=4MMP PE=1 SV=1	[more]
O23507	5.0e-24	53.04	Metalloendoproteinase 1-MMP OS=Arabidopsis thaliana OX=3702 GN=1MMP PE=1 SV=1	[more]

BLAST of Sed0002611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H9C5	4.4e-39	71.43	metalloendoproteinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460805 PE=4 ...	[more]
A0A6J1C1I2	2.4e-37	61.67	metalloendoproteinase 3-MMP-like OS=Momordica charantia OX=3673 GN=LOC111006559 ...	[more]
A0A175YHG4	7.0e-37	70.64	ZnMc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_...	[more]
A0A6J1JKI7	9.1e-37	68.75	metalloendoproteinase 2-MMP-like OS=Cucurbita maxima OX=3661 GN=LOC111487737 PE=...	[more]
A0A175YGL0	5.9e-36	70.48	ZnMc domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_...	[more]

BLAST of Sed0002611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70170.1	6.9e-29	53.98	matrix metalloproteinase	[more]
AT1G24140.1	6.4e-27	50.00	Matrixin family protein	[more]
AT2G45040.1	1.2e-25	51.79	Matrixin family protein	[more]
AT4G16640.1	3.5e-25	53.04	Matrixin family protein	[more]
AT1G59970.1	7.9e-25	50.44	Matrixin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021190	Peptidase M10A	PRINTS	PR00138	MATRIXIN	coord: 86..111 score: 55.21 coord: 120..133 score: 45.56 coord: 29..57 score: 59.55
IPR006026	Peptidase, metallopeptidase	SMART	SM00235	col_5	coord: 3..134 e-value: 1.1E-9 score: 48.1
IPR001818	Peptidase M10, metallopeptidase	PFAM	PF00413	Peptidase_M10	coord: 23..132 e-value: 6.5E-37 score: 126.8
IPR024079	Metallopeptidase, catalytic domain superfamily	GENE3D	3.40.390.10	Collagenase (Catalytic Domain)	coord: 10..134 e-value: 2.8E-39 score: 137.0
None	No IPR available	PANTHER	PTHR10201:SF272	METALLOENDOPROTEINASE 2-MMP-LIKE	coord: 21..133
None	No IPR available	PANTHER	PTHR10201	MATRIX METALLOPROTEINASE	coord: 21..133
None	No IPR available	SUPERFAMILY	55486	Metalloproteases ("zincins"), catalytic domain	coord: 22..133
IPR033739	Peptidase M10A, catalytic domain	CDD	cd04278	ZnMc_MMP	coord: 23..132 e-value: 3.01452E-49 score: 152.743

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002611.1	Sed0002611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008237	metallopeptidase activity