Sed0002579 (gene) Chayote v1

Overview


Name	Sed0002579
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	LG12: 30207041 .. 30207648 (+)
RNA-Seq Expression	Sed0002579
Synteny	Sed0002579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGATATCAGATTCTTCATCTTCTTCCTCAAGAAAACAAATTCTTCGATTCAGATCCATCCATGGCTGGAACTGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGACTACGGCGGCGACTCCAAGAACGACGGCACAGTCTCAGCAGCGAAGACCGGCTCCGCGGCCAAGTACAAGCACAAGCTCGGCGAAGGCCTCGGCAAGACCAGAGCCGCCGCCTCTAATGGCGTCAACAAGCTCAAACAGGGAACCTCTCTTGGCTTCCAATGGATCAAAGATAAATACAACAAAACCGCCCATAAGAATTAGATTCCTGTGTTCGTTTCTCTTTTTCATCACCTTCTTCGTAGCTTAATCTTCGTTTTGATGTATGTAGATAACACATGTGCACGATTTGATTTGTTTTTTTTTTTTTCTTTTTTCCTCTGTTTTTGGATCTGATTGTTTATCCGTGTTGTTTAATTTTATTAATTTTCCATTTCTTTCTTCTTTTTTTCGTTTAATTTGTTAATGGAAGATCGGATCGGCGGAATAAAAATCGCATGATCCTCAACTGTTTATTGGAAATCAAATTAGGGCTAATATCCGAATGAGCGATACAGTGA

mRNA sequence

TTTGGATATCAGATTCTTCATCTTCTTCCTCAAGAAAACAAATTCTTCGATTCAGATCCATCCATGGCTGGAACTGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGACTACGGCGGCGACTCCAAGAACGACGGCACAGTCTCAGCAGCGAAGACCGGCTCCGCGGCCAAGTACAAGCACAAGCTCGGCGAAGGCCTCGGCAAGACCAGAGCCGCCGCCTCTAATGGCGTCAACAAGCTCAAACAGGGAACCTCTCTTGGCTTCCAATGGATCAAAGATAAATACAACAAAACCGCCCATAAGAATTAGATTCCTGTGTTCGTTTCTCTTTTTCATCACCTTCTTCGTAGCTTAATCTTCGTTTTGATGTATGTAGATAACACATGTGCACGATTTGATTTGTTTTTTTTTTTTTCTTTTTTCCTCTGTTTTTGGATCTGATTGTTTATCCGTGTTGTTTAATTTTATTAATTTTCCATTTCTTTCTTCTTTTTTTCGTTTAATTTGTTAATGGAAGATCGGATCGGCGGAATAAAAATCGCATGATCCTCAACTGTTTATTGGAAATCAAATTAGGGCTAATATCCGAATGAGCGATACAGTGA

Coding sequence (CDS)

ATGGCTGGAACTGGAAACGGCTCCTACGATTGGGCGGACCAGTGGGACTACGGCGGCGACTCCAAGAACGACGGCACAGTCTCAGCAGCGAAGACCGGCTCCGCGGCCAAGTACAAGCACAAGCTCGGCGAAGGCCTCGGCAAGACCAGAGCCGCCGCCTCTAATGGCGTCAACAAGCTCAAACAGGGAACCTCTCTTGGCTTCCAATGGATCAAAGATAAATACAACAAAACCGCCCATAAGAATTAG

Protein sequence

MAGTGNGSYDWADQWDYGGDSKNDGTVSAAKTGSAAKYKHKLGEGLGKTRAAASNGVNKLKQGTSLGFQWIKDKYNKTAHKN

Homology

[Close]

BLAST of Sed0002579 vs. NCBI nr
Match: XP_022921775.1 (uncharacterized protein LOC111429929 [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 2.3e-21
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 5  GNGSYDWADQWDYGGDSKNDGTVSAAKTG---SAAKYKHKLGEGLGKTRAAASNGVNKLK 64
          GNGSYDWADQWDY  DSK+  T +  K+G   +  KYK K+GEGLGKT+A ASNGV K+K
Sbjct: 3  GNGSYDWADQWDY-SDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKVK 62

Query: 65 QGTSLGFQWIKDKYNKTAHK 82
          QGTSLGFQWIKDKYNKTAHK
Sbjct: 63 QGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of Sed0002579 vs. NCBI nr
Match: KAG6589470.1 (Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 5.2e-21
Identity = 57/80 (71.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 5   GNGSYDWADQWDYGGDSKNDGTVSAAKTG---SAAKYKHKLGEGLGKTRAAASNGVNKLK 64
           GNGSYDWADQWDY  DSK+  T +  K+G   +  KYK K+GEGLGKT+A ASNGV K+K
Sbjct: 84  GNGSYDWADQWDY-SDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKVK 143

Query: 65  QGTSLGFQWIKDKYNKTAHK 82
           +GTSLGFQWIKDKYNKTAHK
Sbjct: 144 EGTSLGFQWIKDKYNKTAHK 162

[Close]

BLAST of Sed0002579 vs. NCBI nr
Match: XP_022988421.1 (uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharacterized protein LOC111485668 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 8.8e-21
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 5   GNGSYDWADQWDYGGDSKNDGTVSAAKTG----SAAKYKHKLGEGLGKTRAAASNGVNKL 64
           GNGSYDWADQWDY  DSK+  T +  K+G    +  KYK K+GEGLGKT+A ASNGV K+
Sbjct: 41  GNGSYDWADQWDY-SDSKDVVTETKKKSGGGGNTTTKYKQKVGEGLGKTKAVASNGVKKV 100

Query: 65  KQGTSLGFQWIKDKYNKTAHK 82
           K+GTSLGFQWIKDKYNKTAHK
Sbjct: 101 KEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of Sed0002579 vs. NCBI nr
Match: XP_023516550.1 (uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 5   GNGSYDWADQWDYGGDSKNDGTVSAAKTG---SAAKYKHKLGEGLGKTRAAASNGVNKLK 64
           G+GSYDWADQWDY  DSK+  T +  K+G   +  KYK K+GEGLGKT+A ASNGV K+K
Sbjct: 41  GSGSYDWADQWDY-SDSKDVVTENKKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKVK 100

Query: 65  QGTSLGFQWIKDKYNKTAHK 82
           +GTSLGFQWIKDKYNKTAHK
Sbjct: 101 EGTSLGFQWIKDKYNKTAHK 119

[Close]

BLAST of Sed0002579 vs. NCBI nr
Match: XP_008453134.1 (PREDICTED: uncharacterized protein LOC103493940 [Cucumis melo] >KAA0057896.1 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Cucumis melo var. makuwa] >TYJ98584.1 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-20
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MAGTGNGSYDWADQWDYGGD----SKNDGTVSAAKTGSAAKYKHKLGEGLGKTRAAASNG 60
          MA   N SYDWADQWDY       + N   +S +   S+AKYK K+GEGLGKT+A ASNG
Sbjct: 1  MAAGNNSSYDWADQWDYNDSADVVTNNKKKISGSGGNSSAKYKQKVGEGLGKTKAVASNG 60

Query: 61 VNKLKQGTSLGFQWIKDKYNKTAHK 82
          V K+K+GTSLGFQWIKDKYNKTAHK
Sbjct: 61 VKKVKEGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of Sed0002579 vs. ExPASy TrEMBL
Match: A0A6J1E6S2 (uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC111429929 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 5  GNGSYDWADQWDYGGDSKNDGTVSAAKTG---SAAKYKHKLGEGLGKTRAAASNGVNKLK 64
          GNGSYDWADQWDY  DSK+  T +  K+G   +  KYK K+GEGLGKT+A ASNGV K+K
Sbjct: 3  GNGSYDWADQWDY-SDSKDVVTENTKKSGGGNTTTKYKQKVGEGLGKTKAVASNGVKKVK 62

Query: 65 QGTSLGFQWIKDKYNKTAHK 82
          QGTSLGFQWIKDKYNKTAHK
Sbjct: 63 QGTSLGFQWIKDKYNKTAHK 81

[Close]

BLAST of Sed0002579 vs. ExPASy TrEMBL
Match: A0A6J1JCZ5 (uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-21
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 5   GNGSYDWADQWDYGGDSKNDGTVSAAKTG----SAAKYKHKLGEGLGKTRAAASNGVNKL 64
           GNGSYDWADQWDY  DSK+  T +  K+G    +  KYK K+GEGLGKT+A ASNGV K+
Sbjct: 41  GNGSYDWADQWDY-SDSKDVVTETKKKSGGGGNTTTKYKQKVGEGLGKTKAVASNGVKKV 100

Query: 65  KQGTSLGFQWIKDKYNKTAHK 82
           K+GTSLGFQWIKDKYNKTAHK
Sbjct: 101 KEGTSLGFQWIKDKYNKTAHK 120

[Close]

BLAST of Sed0002579 vs. ExPASy TrEMBL
Match: A0A5A7UUQ6 (Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002040 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MAGTGNGSYDWADQWDYGGD----SKNDGTVSAAKTGSAAKYKHKLGEGLGKTRAAASNG 60
          MA   N SYDWADQWDY       + N   +S +   S+AKYK K+GEGLGKT+A ASNG
Sbjct: 1  MAAGNNSSYDWADQWDYNDSADVVTNNKKKISGSGGNSSAKYKQKVGEGLGKTKAVASNG 60

Query: 61 VNKLKQGTSLGFQWIKDKYNKTAHK 82
          V K+K+GTSLGFQWIKDKYNKTAHK
Sbjct: 61 VKKVKEGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of Sed0002579 vs. ExPASy TrEMBL
Match: A0A1S3BW93 (uncharacterized protein LOC103493940 OS=Cucumis melo OX=3656 GN=LOC103493940 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 1  MAGTGNGSYDWADQWDYGGD----SKNDGTVSAAKTGSAAKYKHKLGEGLGKTRAAASNG 60
          MA   N SYDWADQWDY       + N   +S +   S+AKYK K+GEGLGKT+A ASNG
Sbjct: 1  MAAGNNSSYDWADQWDYNDSADVVTNNKKKISGSGGNSSAKYKQKVGEGLGKTKAVASNG 60

Query: 61 VNKLKQGTSLGFQWIKDKYNKTAHK 82
          V K+K+GTSLGFQWIKDKYNKTAHK
Sbjct: 61 VKKVKEGTSLGFQWIKDKYNKTAHK 85

[Close]

BLAST of Sed0002579 vs. ExPASy TrEMBL
Match: A0A6J1C2W0 (uncharacterized protein LOC111007442 OS=Momordica charantia OX=3673 GN=LOC111007442 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 57/80 (71.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 5  GNGSYDWADQWDYGGDSKNDGTVSAAK--TGSAAKYKHKLGEGLGKTRAAASNGVNKLKQ 64
          GNGSYDWADQWDY  DSK   T    K   G  AKYK K+GEGLGKT+A ASNGV K+K+
Sbjct: 3  GNGSYDWADQWDY-SDSKEIVTDKNKKGGGGGGAKYKQKVGEGLGKTKAVASNGVKKVKE 62

Query: 65 GTSLGFQWIKDKYNKTAHKN 83
          GTSLG QWIKDKYNKT HKN
Sbjct: 63 GTSLGLQWIKDKYNKTTHKN 81

[Close]

BLAST of Sed0002579 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-16
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 11 WADQWDYGGDSKNDGTVSAAKTGSAAKYKHKLGEGLGKTRAAASNGVNKLKQGTSLGFQW 70
          WA+QWD    S    T      G+++KYK K+G GLGKT+AAAS+G+ K+K GTSLG  W
Sbjct: 6  WAEQWDSNQQSSGKTTHGGEGGGASSKYKEKVGAGLGKTKAAASSGLKKVKIGTSLGLNW 65

Query: 71 IKDKYNKTAHKN 83
          +KDKYNKT  KN
Sbjct: 66 VKDKYNKTTTKN 77

[Close]

BLAST of Sed0002579 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 4.1e-16
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 6  NGSYDWADQWDYGGDSKNDGTV---------SAAKTGSAAKYKHKLGEGLGKTRAAASNG 65
          NG+  WADQWD  GDS   G +          +  T +  KYK K+G+GL KT+A AS+G
Sbjct: 2  NGT-SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSG 61

Query: 66 VNKLKQGTSLGFQWIKDKYNKTAHK 82
            KLK G+++GF+W+KDKY+KT HK
Sbjct: 62 FKKLKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:

BLAST of Sed0002579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921775.1	2.3e-21	72.50	uncharacterized protein LOC111429929 [Cucurbita moschata]	[more]
KAG6589470.1	5.2e-21	71.25	Alpha-N-acetylglucosaminidase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022988421.1	8.8e-21	70.37	uncharacterized protein LOC111485668 [Cucurbita maxima] >XP_022988422.1 uncharac...	[more]
XP_023516550.1	2.6e-20	70.00	uncharacterized protein LOC111780400 [Cucurbita pepo subsp. pepo]	[more]
XP_008453134.1	2.6e-20	64.71	PREDICTED: uncharacterized protein LOC103493940 [Cucumis melo] >KAA0057896.1 put...	[more]

BLAST of Sed0002579 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6S2	1.1e-21	72.50	uncharacterized protein LOC111429929 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1JCZ5	4.3e-21	70.37	uncharacterized protein LOC111485668 OS=Cucurbita maxima OX=3661 GN=LOC111485668...	[more]
A0A5A7UUQ6	1.2e-20	64.71	Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=C...	[more]
A0A1S3BW93	1.2e-20	64.71	uncharacterized protein LOC103493940 OS=Cucumis melo OX=3656 GN=LOC103493940 PE=...	[more]
A0A6J1C2W0	2.1e-20	71.25	uncharacterized protein LOC111007442 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Sed0002579 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	2.4e-16	55.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	4.1e-16	48.24	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 8..81
None	No IPR available	PANTHER	PTHR33386:SF5	OS02G0740600 PROTEIN	coord: 8..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002579.1	Sed0002579.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030639	polyketide biosynthetic process
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups