Sed0002542 (gene) Chayote v1

Overview


Name	Sed0002542
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	LG12: 1024234 .. 1030377 (-)
RNA-Seq Expression	Sed0002542
Synteny	Sed0002542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATATTTCACAAAAACTCTGAAGGGCCATTTAAGCAAATTCCATTTCAGACATTTTAACCCAAATAACCTGCAGCAGTGTTCACGATAGCAGATCATTTCCAAGGTTTTTGTGTACTTCGATCTCCGCCGTGCTCGGCAGTTCTACAGTGACGGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCTCTGTCCAGCTACACCTTCGGCACTAAAGAACCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAAGTAAGGCGAATTTACTCGATTCCTCAAACCCTAACTTTTTTTTGTTTCTTTTCGAAGTTTTAGACTTGTATTGTTCTTGAAAGTTAGGTATTCTGACTGTTTCGTTCCGTGGATTGTTGTTCATTTTACACTTGATGTGTGCGCCTGTATCAGCACATGGAATCGTGGAAAAATTTGTGTAGTTTTATGATCTTCCTTGATTTTTTGTCGAAAGATTTGCTCATTACTGGTTTTGTGAAAGTACAAGATGTAAAAAGTAAGGTCGAGAGTCCCCAGGCGCGGTGGTCTGGTCGTAGACCTGGGATTTGAAGGTTTACTCCCCTCAAGGTCTAGGTTTGAGAATTATTAGTGACATTAATCATAGACACCTCCGGTTTCTCCATTCCTTCCATATGTCCCGATATATGGCTCGGAGACGGGCATGGTTAACCGATTATAGTGGAGCGTAACTTCTATTTCCCGGTTTAAAGATAATAATAATAATAATGCCGAGGGTATTATGTATATTCTAATTTTAAGAAACAGTTTATTTGGTGAAACTGTATTATTTGGTTTTTTTTTTTTGGAAACAAGGGTAACCATGCCCGTCCCTAGGCCAGGCACTGGGAGACATCGAAGGAGTAATATCACAGCCGAGTCTCGAACCTGGAACCGCATACCCTCGAAGCCCAAGTCTTCAACCACTATGCCATCCCTTGGGGACCGTATTATTTGGTTTTACTCGAGTCATTTATTAGAATTAGAGTGTTAAGTTTTATTTGTATGAGATTTTTTCAGATTATACTCGAGCCATTTGTTCATAGAAAAGCCTCGTGCTTTCTTGTTATTATTTGTTTTCATTGTTTCGTCCTGGCCTGAAAATTTGTCATCTTCTACTTACCGGCTTTGGAGGAATATTAAGTTGAATGAGTAACTCGTACTGACGTGTGAACCGGTTCACAGCTATATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTTAGTGCATATCTTCACAGTATTTCATCTTAATGTATTCATTGTTTCCTTATTATTTTTAGTATTATTGTTTTAAAAATGAATGTCTAAATGTATTGTCGAGCTATAGGCGTTTTAGTCGGATGTCATCGTTTGTGTCTTCATTTTATTTTTATATTCATTGAAGTGTGAATCACTGCAAATGTTCTATAACAAACTATAATATTTAGAAGCCACAAAACATATATTGTATTACTCATATACATCCTTCATCTAAAATATTGACATATAAGTATGCAATTCGAAGGGAAAATTTGTGTTATCGAATGCTCTATTCTCCCTTTTGTTCTTCACCTGAGTTGTACATATTGAAATACAGTGACGATTAGATCTGAACATCCATCATTATCGCCTTTTAGACTATACCCAAACAAAGTACGCATCCAACGAAACCTCTGTATACTTTAACATGGGATCTCCCCACCTATGTCTACTTCTTCCTGGAAAATTTTGGTGTAATCCGTGGAAGCCCATGCAAATTTTGATACAAAAGTAATACCTTGCTTCTATTTTTAATTGTTCTGATATGTCACTATATAACTTAATAGTTTTTTGGTTGCTAAGCCGAATTATGTATTTTAAATTTTTATTTCTTCTGTAACTGACATTTATATATTTTGTAAAACGACTCCAAAATATCCTAATTCTGTTCGGATTGAAGCCACGCTAAAGTTGGATTTAAAATTCACCATCTACCTAGTAATTAATTTACTAAGAGTTTTTTTGACAACTAAATGTTGTCAGGTCAGAAGGTTTGTGAGATTAGTCATGGTGTGCATAAGTTGGTCGAAACACTCGCAAATATCACAAAAAAACAGAACCAGTCGGATTTCAGTTCACACACTGTGCTTTCCAACCCAGACATCCTTTGTTAAGTTGGCCATCTTGAGAATTGAAGAGGATCTATCCTCTTTTTTCTAGACTTCAAGGAATTCACTTTCTCCTTGAATGTCTTGACGAAGGTTCCATTATGTCTAGCCATAAAGAATATACCGAACATTAAAATTTGCAACAAGGAATATGTGTAAGCAGAATCTAGAGTATCCAACATATTTCAACGTCTTTTATCGAAACATATTTTAATGTTGATGAAGACATCTAGAAGCATGCTTGGAAATATACTGATTATTTCATTTCCTTTTCCAATAATCTTGTTTTGAAACAAGGTAACCATGCCCGTCCCTAGGTCAGGCACCGGAGATACCGAAGGAGTAATGTCACAGCTGAGTTTCGAACCCAGGACCTTGAGGGGAGCATACCCTCAAAGCCCAAGTCTTCAACGTGCCACCCCTTGGAGACTTTCCTTTTCCAATAATGATATTCTTAATATCCGTCTCAATAAAAATTGCACTTGTCTTATCTCTGGACTTCAAAAAGGCTAAGGTGACGGAGGCTAAAGGATTTTTGTCAATAGCTGACATAGGGGAAAAAATTCAACCTCCTAGCCCCTAGGGTTATTCAGGAGATTCATTGTCTCGTTGTTTGTGTTGATAAGAGCTGTGCTGAGTAGAAGGCAAAACACAGTTATTGCCAGGTTTTTCTAGAAGTTTTTATTATTATTATTTTTCTAATATTCGTGAGAGTTTGGGTCAACTTACACGCATCTCGACCATTTTCAAGAGACATACCGGCTGACCCTACAACATTCAGATGTCAAGAAAAAGTATAGGAAATTAATTCTTGGGTAAGTGATCATCATGGACTGAACCATTCATCTCTTGGTTACATAAGGCGCTTCTTGACCACTAGGATCAGACTAATTCACTAATGGTTAGGTTTTTCTAGGAGTTAATTTAATAAAAAAAAGATCTATGAAGATTAATCGGTTGTAATATGTCGATAGGATATCTATTTTTTGTGCCTACTATGGTTGAAGAATCTGATCAATGTGTTGTAGCGGTTAAGGCCAGCATTAATGTGGATCATTTGCTGTTATCTCAGTCATGCATCAAGACCTTGGCAGGTATGGAGAATGACTAGGACTTCAACTCCTTGTGAGCTAGAAAATATTGACTTAATCAGGGAGGTAAAATACAACATGGAGAAGTAATAATTCTGCTGGAAGTTCTTAGATGTATATCTCCAAGTTCATTAAGAAACTGATAATTACTGTGTGCTCCAATTGGGAAGGGAATCCAATTAAATCTCGGAAAATCTTTAGCTGAGAAAGAATGGTCATTTGCTTCTCTCTTCCCCGACTATATCTTAAAAAAAATAGGGGAAAAGATAAAAAAAACCAATATCAGTTGAAATGTGTTTTTTTTTATGAAACAGAAATGTGGTATCTAGCAGCCTCATTTTAAGAGAAATCTGTTGGATGCCAAAATAACCATGTTGAAGAACCAAAGGAAGTCTCAAAACATGAGGATAAGCTGTCAAACCCAAAAGCTAAAGTGGTTTATAGAATAGGACTTCAATTATACAAGGCACACTAAATTACAAAAACAACGTCTGTTGGGTTTACCAAGAGAAGGCTGGTTGAAATGCCGGATCCCACGCTGCTTTGCATCCCTTAGACTTGTTTTTGAAGATTCAATAGTTTCTCTCAGCATGTAATTTCGAAACAGCAGCTTTAATATAATCATACTAGAGAATTTTAGGTTCCTGCGAGTTGAATGTTTCTTTTAACTCATTAAGCTTTCTCTTTAGTTGATGCAATTTAGTGACTAATATTCAAGAGTCACATACCTTACCGTGACCAGTGTTTTAAAAAGCCCCGTTAGGCGCACCTCTTGCGCCTCGCCTGGGAAAGGCCAGGTGCGCTTAATAAGGCGCGCGCCTTTTGGCGCCTTACGTGAAGCCTCGGGCACCCAAAAGGCGCGCGCCTTGGAGGCTTTTTTATTTTTTCATGTTTTCACCTTTATCCTTTGTGAGATCCCCGTACTAGGTCATTCAAAGCGCAAGATAACCAATTCAAGACTTTCAATACCTTAAATAACTTAATTCTTCAACTCACAAAGACAACATTCGCTTAAATGAAAGGTTAATAGTTGAATCTTATGTATGTTTTGTATATATTCTTAGTTAAACTTCATTTCTTTCCATGAAATGAAGGTTTAATAGTTAAATATAATGTATGTTTTGTATATTATTCTTGGTTAAAACTTTATTTATGTCTATGAAAATGTGTATACACACATATATATAAAAAAATTGTGTTTTTTATATAGTGCGCCTGATGTAATAAAGCCCGCGCCTTATGGTGTCCCTTGCGCCTCAGGTCCCAGAGGCCCATTGCGCCGTGGGCTTTTTAAAACACTGACCGTGACATAGCTTTATCTTTTCATTCTTTCCTTTCATTCCCACAGGTGCAAGAACATAAGCATCCTCATATTCTACTTCTGCAAATTGGAAATACATTTTGCAAGCTCCCTGGGGGCCGTTTGAAGCCGGGCGAGAATGGTAAGATTTTATTTACTATTGAAGCCCCACACATTCAATTGAGTTAAATCTCTTTCTCTCTCATGTTTATTTTAACAACTGCAGAAATTGACGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCACATTCTCCTGCCCACCAACCTGATTGGCAGGTTTGGCTCATTTCTTATATTCCTGTGTGCAAATCTTTTTTTTTTATAGGAAACAAAAACTTTCATTGATTAAATGAAAATGTTACAAAACAAGCATATGATTCTACATTGCAAATTTTCTGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTCGAAACTGTCATGTATCCATATTGCCCGCCTCATATTACGAAACCTAAGGTATATGATTCTCTTTCTCACTTGTATTGTTGAGCTATTGCTCTTGTTGACTCTTTATTTTATATTTTTTAAACAACCATTTCCTTCTTATTTTGATTAACATTATAAAGAAATCAAAGACCCTTCGTAGGAAGTTTTTTTTTTACTGAATAACTGATTTATCTTACACTCTTTTATTTTAATTTTTAAAATTTATTTCCTCGTGGAAATAGAGAAAATCCTGATTAAGGTTTTTGATGATTCAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTACTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGGTGAGTTACATTTTTCTATGTAGATCCACAACAGTGTGAAAAGAAGTCAATTATCATGCATATTCTTAATTTTATTTTGATTTCAACATTGAAAACCTTTAAGCAACTTGTATGTGTTGGGGGGGTGGATATCAAGGAAAAGACAAAATTTTAAATAGATTCTATAAATGCTAGATGATTACTGATAGTACATATTGATCCCATGGGTCTCAAAAAATATCACAAGCTAAACACTAGTTTCCGATTTTCGCACTTGATCACAGAGATATGGACCAGTTATATCGACGATCCCGCAGCAGCTTTCGAGGTTTCAGTTCAACATGATCACCACGACATGAGATCCCAAGGCATGAACTCGGAATTTATAGCTTGGACAAGCTCTCAATTTGCGATATTAAGGACATTATCAACCTTTTTTGAGTTAGGATAGCATGCTTATTATATAGACTTTGTTGTTCTTGACATTTTCATCGATGAGTTTATAAGCCAGAACCTATGAACATTTATGTTACTTCTAACAAAGAAAATTGACTGATGTTTTGTGTAACGATTGAACTTTATGAAGGTTTTAGAGTGTGAAGTATGTATGTATGGTGCATCATTTGTAATAGTGGTTAAATTGTGGATACTCTCAGATTTTGTGGGTTCCAATTCAGAATCTTGGCCTTAGTTTTCTGTTTTTCTGGTTTTGTGCAACCTTTGAAGTGTG

mRNA sequence

GCCATATTTCACAAAAACTCTGAAGGGCCATTTAAGCAAATTCCATTTCAGACATTTTAACCCAAATAACCTGCAGCAGTGTTCACGATAGCAGATCATTTCCAAGGTTTTTGTGTACTTCGATCTCCGCCGTGCTCGGCAGTTCTACAGTGACGGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCTCTGTCCAGCTACACCTTCGGCACTAAAGAACCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCTCATATTCTACTTCTGCAAATTGGAAATACATTTTGCAAGCTCCCTGGGGGCCGTTTGAAGCCGGGCGAGAATGAAATTGACGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCACATTCTCCTGCCCACCAACCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTCGAAACTGTCATGTATCCATATTGCCCGCCTCATATTACGAAACCTAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTACTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATATGGACCAGTTATATCGACGATCCCGCAGCAGCTTTCGAGGTTTCAGTTCAACATGATCACCACGACATGAGATCCCAAGGCATGAACTCGGAATTTATAGCTTGGACAAGCTCTCAATTTGCGATATTAAGGACATTATCAACCTTTTTTGAGTTAGGATAGCATGCTTATTATATAGACTTTGTTGTTCTTGACATTTTCATCGATGAGTTTATAAGCCAGAACCTATGAACATTTATGTTACTTCTAACAAAGAAAATTGACTGATGTTTTGTGTAACGATTGAACTTTATGAAGGTTTTAGAGTGTGAAGTATGTATGTATGGTGCATCATTTGTAATAGTGGTTAAATTGTGGATACTCTCAGATTTTGTGGGTTCCAATTCAGAATCTTGGCCTTAGTTTTCTGTTTTTCTGGTTTTGTGCAACCTTTGAAGTGTG

Coding sequence (CDS)

ATGGTGACGTCGCCGGTGGTGAACACCTATCCTCTGTCCAGCTACACCTTCGGCACTAAAGAACCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCTCATATTCTACTTCTGCAAATTGGAAATACATTTTGCAAGCTCCCTGGGGGCCGTTTGAAGCCGGGCGAGAATGAAATTGACGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCACATTCTCCTGCCCACCAACCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTCGAAACTGTCATGTATCCATATTGCCCGCCTCATATTACGAAACCTAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTACTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATATGGACCAGTTATATCGACGATCCCGCAGCAGCTTTCGAGGTTTCAGTTCAACATGATCACCACGACATGA

Protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITTT

Homology

[Close]

BLAST of Sed0002542 vs. NCBI nr
Match: XP_022147484.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita moschata] >XP_022974610.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_022975252.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X1 [Cucurbita maxima] >XP_022975253.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like isoform X2 [Cucurbita maxima] >XP_022975430.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita maxima] >XP_023541013.1 pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7028617.1 Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 7.8e-111
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. NCBI nr
Match: XP_004133873.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_008438064.1 PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis melo] >XP_038876350.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Benincasa hispida] >KAA0048979.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Cucumis melo var. makuwa] >TYK17587.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 409.5 bits (1051), Expect = 1.7e-110
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SP+ QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. NCBI nr
Match: XP_031259563.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera] >XP_031261299.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera])

HSP 1 Score: 404.1 bits (1037), Expect = 7.3e-109
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA  PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. NCBI nr
Match: XP_022924789.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita maxima] >XP_023528578.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.7 bits (1036), Expect = 9.5e-109
Identity = 194/200 (97.00%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA QPDWQIGECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. NCBI nr
Match: XP_021293201.1 (pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica] >EOY23171.1 Cleavage/polyadenylation specificity factor, 25kDa subunit [Theobroma cacao])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 191/200 (95.50%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH 
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA  PDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETIMYPYCPPHITKPKECKKLFLVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 4.7e-103
Identity = 176/200 (88.00%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLG +S A  PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot
Match: Q7T3C6 (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.9e-65
Identity = 116/189 (61.38%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 67  LQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E++GLKR +T  LG      Q DW I +C+  WWRPNFE 
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVKQ-DWVIDDCIGNWWRPNFEP 157

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 158 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 217

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 218 PQLLSRFNF 225

[Close]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot
Match: Q6DJE4 (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis OX=8355 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.9e-65
Identity = 116/189 (61.38%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E++GLKR +T  LG      Q DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVQQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.7e-65
Identity = 116/189 (61.38%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E++GLKR +T  LG      Q DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot
Match: O43809 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.7e-65
Identity = 116/189 (61.38%), Postives = 140/189 (74.07%), Query Frame = 0


Query: 7   VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILL 66
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 67  LQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFET 126
           LQ+G TF KLPGG L PGE+E++GLKR +T  LG      Q DW I +C+  WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQ-DWVIDDCIGNWWRPNFEP 156

Query: 127 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186
             YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 187 PQQLSRFQF 196
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Sed0002542 vs. ExPASy TrEMBL
Match: A0A6J1IEE3 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111473295 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 3.8e-111
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. ExPASy TrEMBL
Match: A0A6J1D153 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111016395 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 3.8e-111
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. ExPASy TrEMBL
Match: A0A6J1GGL6 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC111453755 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 3.8e-111
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SPA QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. ExPASy TrEMBL
Match: A0A5D3D0Y8 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004570 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.4e-111
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SP+ QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. ExPASy TrEMBL
Match: A0A0A0L8Y2 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_3G122550 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.4e-111
Identity = 196/200 (98.00%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK
Sbjct: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLGA+SP+ QPDWQIGECVAIWW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRFQFNMITT
Sbjct: 181 PVISTIPQQLSRFQFNMITT 200

[Close]

BLAST of Sed0002542 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 375.2 bits (962), Expect = 3.4e-104
Identity = 176/200 (88.00%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 1   MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHK 60
           M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH 
Sbjct: 1   MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60

Query: 61  HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWW 120
           HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLG +S A  PDW +GECVA WW
Sbjct: 61  HPHILLLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWW 120

Query: 121 RPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG 180
           RPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYG
Sbjct: 121 RPNFETMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYG 180

Query: 181 PVISTIPQQLSRFQFNMITT 201
           PVISTIPQQLSRF FNMI++
Sbjct: 181 PVISTIPQQLSRFHFNMISS 200

[Close]

BLAST of Sed0002542 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 240.7 bits (613), Expect = 9.9e-64
Identity = 109/193 (56.48%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 6   VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHIL 65
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 66  LLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDWQIGECVAIWWRPNFE 125
           LLQ  N+  KLPGGRL+PGE++I+GLKRKL SKL  +       +++GEC+ +WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185
           T+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 186 IPQQLSRFQFNMI 199
           IP+ LS+F FNM+
Sbjct: 208 IPKLLSKFSFNMM 220

The following BLAST results are available for this feature:

BLAST of Sed0002542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147484.1	7.8e-111	98.50	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia] >XP_022950750...	[more]
XP_004133873.1	1.7e-110	98.00	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus] >XP_008438064.1 P...	[more]
XP_031259563.1	7.3e-109	96.00	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera] >XP_031261299.1 pre...	[more]
XP_022924789.1	9.5e-109	97.00	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata] >XP_022980420....	[more]
XP_021293201.1	1.6e-108	95.50	pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica] >EOY23171.1 Cl...	[more]

BLAST of Sed0002542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXS3	4.7e-103	88.00	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q7T3C6	3.9e-65	61.38	Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955...	[more]
Q6DJE4	3.9e-65	61.38	Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis OX=8...	[more]
Q3ZCA2	8.7e-65	61.38	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
O43809	8.7e-65	61.38	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]

BLAST of Sed0002542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEE3	3.8e-111	98.50	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1D153	3.8e-111	98.50	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1GGL6	3.8e-111	98.50	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A5D3D0Y8	8.4e-111	98.00	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L8Y2	8.4e-111	98.00	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_3G1...	[more]

BLAST of Sed0002542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25550.1	3.4e-104	88.00	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]
AT4G29820.1	9.9e-64	56.48	homolog of CFIM-25	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 1..201 e-value: 1.6E-95 score: 316.6
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 6..193 e-value: 7.4E-83 score: 276.7
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 1..182
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 6..197 e-value: 2.4E-91 score: 306.3
None	No IPR available	PANTHER	PTHR13047:SF2	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 2-LIKE	coord: 1..182
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 49..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002542.1	Sed0002542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0003729	mRNA binding