Sed0002509 (gene) Chayote v1

Overview


Name	Sed0002509
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG13: 10830371 .. 10834631 (+)
RNA-Seq Expression	Sed0002509
Synteny	Sed0002509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTGTTAATTTCCTTCTTCGGCTTGTGCATCTACATATGTTTCCAATGCTACAACCACGAATTTATAGATGCCCATCGAATAAGTCGTGAAAATAGACAAACGGCGACAATTGTGGATGTTGAGGAACTAAATCGCAAGACTCAAATGGCTATGGAAAAATTGATGAAGCCATCGATCGATTACGATTGTGCGGAGGATGATAAAGTTCGATTGAAGTTGAGTGAATGTGTGATATGTTTGGAGGAGTTTGGAGATAAAGTTTCATGTCGAGTTTTTCCTAATTGTAAGCATATGTTCCATATGCAATGCATACTCGATTGGTTAAGGATTAATCAAACTTGTCCTGTATGTCGGACTCAATTGTAGCCCGCAACTAACATGATTCTTTTAAGGTAATATGTGAAAAGTTTTGTCCTTTCATTTCCAATTCTATAAATTTATATCCTTTAAATATTGCGGTATATTTTATTTCTAAGTTGGGTTGGGGAAAATATTAATGAATCTATATTTGATATGTGCCCTTTACCATTTAATCCTCCTTCTTTCGGGATGAACTTTTAAAAAATAAGTTTTAGTCTCAAATATAGAAAATAATTATAAAAAAAGTAATTTTTCAAAAAATTAACAATTATAATTATTGATATTAATAATTTATAATAATATTATATTAATAATACATAATAAGTACTAATGAGTTTTTTTTAGTACAAGTATTAATAAATATTTATAATATAGATTTCAAAAAAGAAATTTATAATACAGTTTCAAATATTTTAAAATTTAACTATTTTATGAGAAAAACACATTCAATACAATTTTTTATAAAAAAAATATATAAACTCAATAATAATAATAATTAATATATATAGGATTTTTCATAAATAATAAAAAAGAAAAAAATTATCATAATAAAAAAAATTCAAATATACTAGAATTTTCCATTCATACCAAATTTCCCTAATTTATTACACTATTTTTTTTTCTAAATTAATGGTGAGTTAGCAAATATTGAAGTTTTCCCCAAACATCGATAACCGTCATCATAAATAGGAGCGATATGTAAATATGGTATGCCTTTGATTATGCTTTCCATATAAATTTTAACAACATTATATTTAAATGGTTTTTTTAGTACATATTAAGGGTGGGCGACAGATACCAATTGTCGGGATAAAACTTGTGACGCTGGTGTTGAATTGGTTGACAGATACCGATTCTCGGGATCGAACCTGTGACGTTGGTGTTGAACTGGTTCACAACTAAAAAATAAAATCATTGCGCCACTGACTCATTCAGTTATGTATAAATGATTGATTCTTCAAGATTGAAACACAAATATACATTTTAAGTGTGTGATATACAAAAATGAAGACTCTGAATAATAATCTTTTTACGATTTTTCTCTTGGTTTTTGCATCGACTTTTAATTTCTTCTCTTGTTTTGCCGACCAATTTCCAAATTCGCCTTGGAAAGTGAGGATTATGAACTACCAGAGAAATGAATCTCCACCCTTCATTGCAAGTCCAAGGACAATGATCTAGCTAAATGAAGAGCTCCATTTATTTTTTGTGATTTAAATTTAAAATTATGCATTATGATTATTTTATTTTCAAAATTAAGCATGTTTTTTGTTGAATAAAATTGGAATATGCTAGATCATTCAACTTGATTCTAGATGACCAAGGAAGGTTCTAGATCATAAACATATGTTCTAGAATGATGAAGAGAATTCTAGAACACCATTTGTCTAAGAATGATGAAGAGAATTCTAGAACACCATTTGTCTAAGATTGGTGAAGAGAATTCTAGAAACACACTTTGTTCAAGATTGGTGAAGAGAACTCTATAACACCATTTATTTAAGATTAGTAGGGAGAATTCTAGAACACACTTTGGCTAAGATTGTTAAAGAAAGATCTAGATATACACATTATCCAAAGTGAAGTTGTGGCAAAGTTGAGACCACATGATTTACTTGATCCCCAAGGTGAGATGTGGCCAATTTATGACAATAGGATTTACTTGGAGCCCAAGTTTATGTGCACTATAAATAGGTAATGTCATTAGTTGGCAAACCATCCAAAAATCTCTCAAGACATCCCACATCAAATTGAGTGAGGGTGTGAGATAAAAATAGAGAGAGTTTCTTCTTATAAGAGAGTTTGTTGCTACATTGTAAGAGAGAAAGTTTGTAACTCCTATTTTTATAATGAAGTTCTTCTATCCTTGCCTGTGGTTTTCCTATTTTGTTTAGAGGTTTTCAAAGTAAAATCACCGTGTCGTTCTTTCTCTTCTTCCTTGTTCATTATTATTGTTGATCTCAATCTATTATAGCTGTGACCCTACTCTATTCGATGCAAACAATCATATCAAGTGGTATCAGAGCCTGGTTCTTGGTGAAAATATCTACTTATCTATGGTTGCCACTAAAAGTGGATCCTCCACATCAGAAAATAAGTTAGATATTTTTAACCTTTATTGAAAGGCAAGAGAATTGTTTAGGATTCGTGGTAGAAGCAATGACGGCAAGGTTCAAGATTGAGAAGTTCAACAAGACCAATTTATCGTTGTGGAAGATGAAGATGAAGGCTATCTTGAGAAAAGATAATTGTCTGGCAACCATCAACGAAATGCTAGTGGACACACAGATGATAAGTGGAACGAGATGGACGAAAATGCTATTACAAATCTCATCTGACACTAGCAGATAGAGTGTTGTGAAGCATGGAGGAGAAGAAACTTTTGAGGGAGATTTGAGATCACAAAATTGTACGAGGTTAAATCACTTCACAACAAGTTTTTCCTTTAAGAGAAAATTGTATTCTCTCCAAATGTCTGAAATTCTACTTCAAAGTCTTCCTGATTCGTATGATCAACTTGTCATCAACTTGACAAATGAGGCTCTAGTGGTGAAAAGAGGCAGATCAACAGAAGAAAAAAAATCAAGAAGTAAGAAGGACGTGAAGTGCTACCATTCTCATAAGAAAAGACACCTGAAGAAGGATTGTTGAAATCTAAGCAAGAAAGATTTCAATCCTCAAGGAAATGTAGCAAACACCTCTAACGTAGGTGGTATTTTATGTTATGAAGCACAGACAACTATCAAAGGTAGAAAGAGTTTGGCTGATGAATGGTTCATCGACTAAGAAGACGGTTATGATCATGCCTTGATGATTGTATGTCTTGGAACTATCAAGTTGAAGTTCCATGATAGTGCTGCTCGTACAATTTAATAATTGAAATGCGTAGAAGACCTAGAAAGGAACTTGCTCTCATTAGGTCAACTTGAGAACCTTGATTGCAAAGTTGTGGTTGAGAGGAGCGCTGATACTTATGAAGGGAGAAAAAGTTGACACAAACCTATACATGTTGGTGGGAGAGACTTTGTAAAAAAGAGAGACATTTGTTGTCTCAAGTAGTCTAAGTGAAAGGTTTCAAAAGATGTGGCATCAGAAACTTGGGCACATGTCGGAGGAAGAAGTTGAAGTTCTTGCATAGCAAAATCTACTCCCATAGCTTATTAAGGTATGTTTACCTTTGTGTGAGCATCGCGTGGCAAGTGGGCAACACAAATTAAAGTTCAACGCATGAGATTCTATGGAGTTATTCTAGAATTAGTTCATTATGATGGACGGAAAGCACCGGTTACATCCTTAGAAGAAGCAAGGTACTTTGTGTTCTTTCTAGGCAGTGACTCCAAGAGGTGTTGGGTGTATCCCATCGAGAAGAAGGCAGATGTGTGTGTGGTCTTCAAAGTAATCAAAGTGCTAGTTGAACTTCAACCAAGAAAAAAGGTCAAGTGTGCTGATGGTGTGAAGGGGTATACATGTGGGATCCCACTACCCACAAGGTTATCATCAACATGCTTGAAAAAGAAATGTGAATGCTCCAACGAGAAGTAAAAATAGAAGGAACTTGGTTTGCAGGTTGAACGAATCTCTGTATGGTCTCATATAGGTGCCGAGATATTACAAGAGATTTTCCTTCATCGTGAGCCTTGTATACAACATACTCGGTGTAAGCCTTGTGCATATTTCAAGAGGTTTGGTGGAAAGATTTAATTATCTTGTTGTTGTATGGTGACGACATGTTGGTAGTAGGCCCCATCAAAGATTGTCTTAAGGAGTTGAAGGCTCAGTTGGATAGGGTGTTTGAAATGAAAGACTTGAGACCAGCAAACAAGATTCCGAGGATGCAAAATCACCGAGACAGAAATAA

mRNA sequence

ATGCCTATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTGTTAATTTCCTTCTTCGGCTTGTGCATCTACATATGTTTCCAATGCTACAACCACGAATTTATAGATGCCCATCGAATAAGTCGTGAAAATAGACAAACGGCGACAATTGTGGATGTTGAGGAACTAAATCGCAAGACTCAAATGGCTATGGAAAAATTGATGAAGCCATCGATCGATTACGATTGTGCGGAGGATGATAAAGTTCGATTGAAGTTGAGTGAATGTGTGATATGTTTGGAGGAGTTTGGAGATAAAGTTTCATGTCGAGTTTTTCCTAATTGTAAGCATATGTTCCATATGCAATGCATACTCGATTGTACTAATGAGTTTTTTTTAGTACAAGTATTAATAAATATTTATAATATAGATTTCAAAAAAGAAATTTATAATACAGTTAAATCACTTCACAACAAACTTGAGACCAGCAAACAAGATTCCGAGGATGCAAAATCACCGAGACAGAAATAA

Coding sequence (CDS)

ATGCCTATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTGTTAATTTCCTTCTTCGGCTTGTGCATCTACATATGTTTCCAATGCTACAACCACGAATTTATAGATGCCCATCGAATAAGTCGTGAAAATAGACAAACGGCGACAATTGTGGATGTTGAGGAACTAAATCGCAAGACTCAAATGGCTATGGAAAAATTGATGAAGCCATCGATCGATTACGATTGTGCGGAGGATGATAAAGTTCGATTGAAGTTGAGTGAATGTGTGATATGTTTGGAGGAGTTTGGAGATAAAGTTTCATGTCGAGTTTTTCCTAATTGTAAGCATATGTTCCATATGCAATGCATACTCGATTGTACTAATGAGTTTTTTTTAGTACAAGTATTAATAAATATTTATAATATAGATTTCAAAAAAGAAATTTATAATACAGTTAAATCACTTCACAACAAACTTGAGACCAGCAAACAAGATTCCGAGGATGCAAAATCACCGAGACAGAAATAA

Protein sequence

MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCILDCTNEFFLVQVLINIYNIDFKKEIYNTVKSLHNKLETSKQDSEDAKSPRQK

Homology

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BLAST of Sed0002509 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-28
Identity = 71/129 (55.04%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 1   MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIV 60
           MPIIV+FGF+LT++VL SFF LCIYICFQC+   FI A +  R+N           A  V
Sbjct: 162 MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAATV 221

Query: 61  DVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSECVICLEEFGDKVSCRVFPNCK 120
           + EELN +T   MEKL  P +DY C E+D      +L+EC ICLE FG++VSCRVFPNCK
Sbjct: 222 NPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCK 281

[Close]

BLAST of Sed0002509 vs. NCBI nr
Match: KAG6600728.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 4.1e-28
Identity = 71/129 (55.04%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 1   MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIV 60
           MPIIV+FGF+LT++VL SFF LCIYICFQC+   FI A +  R+N           A  V
Sbjct: 1   MPIIVLFGFVLTVLVLFSFFSLCIYICFQCHTQGFIGATQTHRDNGHGMATRAATRAATV 60

Query: 61  DVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSECVICLEEFGDKVSCRVFPNCK 120
           + EELN +T   MEKL  P +DY C E+D      +L+EC ICLE FG++VSCRVFPNCK
Sbjct: 61  NPEELNHQTHRVMEKLTMPLVDYGCKENDGEVASSELNECAICLEAFGNRVSCRVFPNCK 120

[Close]

BLAST of Sed0002509 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 1   MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIV 60
           M IIVIFG  L I+V+++FF LC+YICFQCYNH F +   I  E+        R T+  V
Sbjct: 1   MHIIVIFGLFLIILVILTFFALCLYICFQCYNHGFPEDDSIITESGESTTTTTRATSVAV 60

Query: 61  DVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHM 120
           D  E+NR  Q+AMEKL KPS +YD  +D++    LS+C ICLEEF +   CRVFPNCKHM
Sbjct: 61  DSNEINRHIQIAMEKLTKPSTEYDYEKDNEAVSVLSQCAICLEEFENTDLCRVFPNCKHM 120

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BLAST of Sed0002509 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-17
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 48  TATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFP 107
           T  + D EE NR+ QMAMEKL KPS  Y+C E+D+    LSEC ICLE+ G++VSCRVFP
Sbjct: 181 TTMVADPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFP 240

Query: 108 NCKHMFHMQCILD 121
           NCKH+FH  CI++
Sbjct: 241 NCKHIFHTHCIIN 253

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BLAST of Sed0002509 vs. NCBI nr
Match: XP_023545744.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 37  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSECVICL 96
           + H ++         V+ EELN +   AMEKL  P +DY C E+D      +L+EC ICL
Sbjct: 62  NGHGMATRAATRVATVNPEELNHQIHRAMEKLTMPLVDYGCKENDGEVAGSELNECAICL 121

Query: 97  EEFGDKVSCRVFPNCKHMFHMQCIL 120
           E FG++VSCRVFPNCKHMFH  CI+
Sbjct: 122 EAFGNRVSCRVFPNCKHMFHTHCII 146

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BLAST of Sed0002509 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 89  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           EC +CL EF D  S RV PNCKH FH+ CI
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCI 104

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BLAST of Sed0002509 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-04
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0


Query: 71  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           P   Y   ++ K+  K  EC ICL E  D  + R+ P C H+FH+ CI
Sbjct: 105 PVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCI 152

[Close]

BLAST of Sed0002509 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.3e-04
Identity = 33/128 (25.78%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 4   IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK- 63
           + + G L T  +L+S++   I  C   +  + +    +SR  R  Q   +V   EL  + 
Sbjct: 39  VAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRG 98

Query: 64  ---TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSECVICLEEFGDKVSCRVFPNCK 119
              + +    + K    YD  +       +++   +  EC +CL EF D+   R+ PNC 
Sbjct: 99  LDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCS 158

[Close]

BLAST of Sed0002509 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04
Identity = 36/121 (29.75%), Postives = 55/121 (45.45%), Query Frame = 0


Query: 4   IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR-- 63
           I + G L T  +L+S++   I++   C N   ID  R  R   ++    I    E+NR  
Sbjct: 46  IAVIGILATAFLLVSYY---IFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGL 105

Query: 64  --KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQC 119
                 A+        D    E+D+ +    EC +CL EF +    R+ PNC H+FH+ C
Sbjct: 106 DESAIRAIPVFKFKKRDVVAGEEDQSK-NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDC 162

[Close]

BLAST of Sed0002509 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-16
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 56  ELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHM 115
           E NR+ QMAMEKL KPS  Y+C E+D+    LSEC ICLE+ G++VSCRVFPNCKH+FH 
Sbjct: 7   ERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFPNCKHIFHT 66

Query: 116 QCILD 121
            CI++
Sbjct: 67  HCIIN 71

[Close]

BLAST of Sed0002509 vs. ExPASy TrEMBL
Match: A0A7J9IC66 (RING-type domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_028082 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.8e-06
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 62  QMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           Q A+EKL+ P I Y     DK  LK SEC ICL+++    SCRVFP+CKHMFH+ CI
Sbjct: 111 QQALEKLL-PPIAYGV---DKHALKSSECPICLDDYVVGESCRVFPDCKHMFHLSCI 163

[Close]

BLAST of Sed0002509 vs. ExPASy TrEMBL
Match: A0A5D2TCP0 (RING-type E3 ubiquitin transferase OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G243600v1 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 31/88 (35.23%), Postives = 46/88 (52.27%), Query Frame = 0


Query: 33  HEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSEC 92
           H   D H+       ++ +V      + +Q  ++K ++P         E++K+ L+ SEC
Sbjct: 24  HSRRDIHQDIENGLPSSPVVHPAMQRQPSQTELDKTLRPITVGTIVRYEEEKIELQYSEC 83

Query: 93  VICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           VICLEEF     CRV PNCKH +H  CI
Sbjct: 84  VICLEEFKGGDCCRVLPNCKHQYHQHCI 111

[Close]

BLAST of Sed0002509 vs. ExPASy TrEMBL
Match: A0A7J8VQV2 (RING-type E3 ubiquitin transferase (Fragment) OS=Gossypium klotzschianum OX=34286 GN=Goklo_005092 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 37  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSECVICL 96
           D H+  +    ++ +V      + +Q  ++K ++P         E++K+  + SECVICL
Sbjct: 28  DIHQDIKNGLPSSPVVHPAMQRQPSQTELDKTLRPITVGTIVRYEEEKIESQYSECVICL 87

Query: 97  EEFGDKVSCRVFPNCKHMFHMQCI 119
           EEF     CRV PNCKH +H  CI
Sbjct: 88  EEFKGGDCCRVLPNCKHQYHQHCI 111

[Close]

BLAST of Sed0002509 vs. ExPASy TrEMBL
Match: A0A5N5I0S3 (RING-H2 finger protein ATL64-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029625 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 37/112 (33.04%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 8   GFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENRQTATIVDVEELNRKTQMAMEK 67
           G  + I V++ F G+ + +      H  I     +R N Q   +V    +    +M+ E+
Sbjct: 2   GMEILISVILLFVGIVVLVVI----HVCIVGRAFNRANNQGVNLVQRSSIFGIRRMSNEE 61

Query: 68  L-MKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           L M P  DY  AE+        +C +CLE F     CR+ PNCKH FH QCI
Sbjct: 62  LNMLPCFDYK-AEEKGTTTSPGDCAVCLESFKGGEKCRLLPNCKHSFHAQCI 108

[Close]

BLAST of Sed0002509 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 8.0e-06
Identity = 19/30 (63.33%), Postives = 21/30 (70.00%), Query Frame = 0


Query: 89  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           EC +CL EF D  S RV PNCKH FH+ CI
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVDCI 104

[Close]

BLAST of Sed0002509 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-05
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 0


Query: 71  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
           P   Y   ++ K+  K  EC ICL E  D  + R+ P C H+FH+ CI
Sbjct: 105 PVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCI 152

[Close]

BLAST of Sed0002509 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.0e-05
Identity = 33/128 (25.78%), Postives = 58/128 (45.31%), Query Frame = 0


Query: 4   IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK- 63
           + + G L T  +L+S++   I  C   +  + +    +SR  R  Q   +V   EL  + 
Sbjct: 39  VAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRG 98

Query: 64  ---TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSECVICLEEFGDKVSCRVFPNCK 119
              + +    + K    YD  +       +++   +  EC +CL EF D+   R+ PNC 
Sbjct: 99  LDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCS 158

[Close]

BLAST of Sed0002509 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 6.7e-05
Identity = 36/121 (29.75%), Postives = 55/121 (45.45%), Query Frame = 0


Query: 4   IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR-- 63
           I + G L T  +L+S++   I++   C N   ID  R  R   ++    I    E+NR  
Sbjct: 46  IAVIGILATAFLLVSYY---IFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNRGL 105

Query: 64  --KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQC 119
                 A+        D    E+D+ +    EC +CL EF +    R+ PNC H+FH+ C
Sbjct: 106 DESAIRAIPVFKFKKRDVVAGEEDQSK-NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDC 162

[Close]

BLAST of Sed0002509 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 42.4 bits (98), Expect = 4.4e-04
Identity = 29/120 (24.17%), Postives = 50/120 (41.67%), Query Frame = 0


Query: 8   GFLLTIIVLISFFGLCIYICFQCYNHEFI------DAHRISRENRQTATIVDVEELNRKT 67
           G ++   ++I FF + + +    Y   ++         R SR  R T      +     T
Sbjct: 28  GKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAAT 87

Query: 68  QMAMEKLMKPSIDYDC---AEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI 119
            +   + + P++          D+      EC +CL EF +  + RV PNC+H FH+ CI
Sbjct: 88  SVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCI 147

The following BLAST results are available for this feature:

BLAST of Sed0002509 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031368.1	4.1e-28	55.04	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6600728.1	4.1e-28	55.04	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6577374.1	3.8e-26	53.54	RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011652743.1	2.5e-17	60.27	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]
XP_023545744.1	4.4e-14	49.41	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0002509 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LF65	1.1e-04	63.33	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
Q8W571	3.3e-04	39.58	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q9LSW9	4.3e-04	25.78	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	9.5e-04	29.75	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]

BLAST of Sed0002509 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Y8	8.6e-16	63.08	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P...	[more]
A0A7J9IC66	2.8e-06	56.14	RING-type domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_02...	[more]
A0A5D2TCP0	3.6e-06	35.23	RING-type E3 ubiquitin transferase OS=Gossypium mustelinum OX=34275 GN=E1A91_D10...	[more]
A0A7J8VQV2	1.4e-05	34.52	RING-type E3 ubiquitin transferase (Fragment) OS=Gossypium klotzschianum OX=3428...	[more]
A0A5N5I0S3	1.2e-04	33.04	RING-H2 finger protein ATL64-like OS=Pyrus ussuriensis x Pyrus communis OX=24484...	[more]

BLAST of Sed0002509 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15975.1	8.0e-06	63.33	RING/U-box superfamily protein	[more]
AT4G40070.1	2.3e-05	39.58	RING/U-box superfamily protein	[more]
AT5G43420.1	3.0e-05	25.78	RING/U-box superfamily protein	[more]
AT1G04360.1	6.7e-05	29.75	RING/U-box superfamily protein	[more]
AT3G16720.1	4.4e-04	24.17	TOXICOS EN LEVADURA 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 38..125 e-value: 6.5E-9 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 89..118 e-value: 7.3E-9 score: 35.2
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 9..118
None	No IPR available	PANTHER	PTHR45798:SF62	RING-H2 FINGER PROTEIN ATL3-LIKE	coord: 9..118
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 89..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002509.1	Sed0002509.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity