Sed0002447 (gene) Chayote v1

Overview


Name	Sed0002447
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 39-like
Location	LG07: 5886435 .. 5889062 (-)
RNA-Seq Expression	Sed0002447
Synteny	Sed0002447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAAAATTGGAATCCGAAAAGACTGAAAAAGCCACTCCCGTTTATGATCGGAACCCCACGTCGGAGTCCATTTCTTCTTCTCCGGTCAGTTTTCCGATCGATAGCTAGGGTTTCGCTCTCGTATATCTCCTCCTTACTTGTATTAACTTTCTGTTGTTTATCAGTTTTTTGGTTTATATATTTGTTGAATCTCGACTGTAAATTTGTTAGATTAAACCTCTTTTTGTTAGATTTCAGTTGCTGAAATTTGTTTAGAGATCTTCAAGAAATTCGTAAATATTGTACAGATATCTGTTATACCTGTCAATATATTGGATATATCATTTGCCGTTCCCAATTTCGTCGATTTTTTCCAAATTTGTGGAATTAGGGTTTCTATTCTGTCAGTTTTTTCGACGAATCGAGTTTTCCTTTCTTTTGTGCCAAATTTGAAATGAGTGTTCCTTATCCTCTTAACCAAATTACTCCTCCGGATCCTGAGGCTCTCGGCGATCGGCCGCCATTGCTTCCTCGACATTCTGATATTCTGAGGTCTGAAACTTTACCGAATTGGGGAATGCCTTCGAATTTTGAGATTCCACAATGGAACAATCTTAATAATAACCCTATGTTTAGACCTGCTTTTCACGATACTCGTAGATGGTTACCTTCAGGGCGTTCGAATGTTGATTTTCGGTCTGGAATATCGACAGAAATGGAAATGTGCAGACAGTTCCAGCGCAGGGGGGAATGTTCATATGGGGATCAGTGTCGTTTTCTTCATGGCATTCCTGAGAAAACTAGGGATGTTGGGTTCTCTAGCCAGATTTATGAGGCTAGAACAGTAGCTTCTGGTCATGTTATGGATCGAAGAAGGAGAGGGTCTGGTCAATTGGAAGAAACAAGATCAACAGTACAAACGATTGTTGCCTGCAGTGATACTCAAAAGCCTGAAAGTTGCAAAACCAGGCTCTGTTACCTCTGGCGGACGACTGGTCACTGCCCATATGGGGAGCTTTGTCGGTTTGCTCATGGAGAAGCAGGTATTTTCTTCTTTCGTTCCATTATCGTTTCATATGTTTTCAAGTGACTTGTAACTTTCTAAACTATCATGGGTTGGCTTAGAAGACAAGAGGGCCTTGAGGAACCAAAAGATTGTGGGTTCAAGGTCATTTACCTAGAAATTATACGGTTTATCTTAAGAGAATAGTCAATGTATGTACAAGCCAGCAAAAACGCTCACGTATATGATTTTATCTATTTTCTTCTGCCATTTTCTATTTATGGGATAAATAACCTTGGCTTGATTCAAATCAATCCCCCTTCCCTTCAAGTTCAACAATGACCCATGATCAAGGATATATGTCTTTGTAGAGTTACGTGGATGGATATATATCTTAGTTGAGCTACGATCAGGTTAGCTAGCAAATGAATTCCCTCATAGTTGCCTTTGTTGGATGATAAATTTTGGGGGCTCCTTGGAAACGAAGTGCAAAACAGACTTAGGGTCTTATCAATCATTGATTAGATATTGTTCCTCAGAACATGAAAAACAAAAAACAGTGATAATTTATTGTTGGTTTATGTTAATTTTAGTAAAATAGAATTTTTATCTTTTTAATTATGTTTTCTTTTTAGGGTTAGGTTAAATCTTATTTTCTTCTTTTATGATTAGGTATTATCTTTTCCTTTAACGATTAGGTCATCTCTGTGTATTTAAAATCATGGTTGGGTTCATTATTAAATTAAGAATTTCATCTTTCAACATAGTATCGGAATCTCAAATTTTTCTTTAAATTGATGGGTTGGACTTTGGAGTATACTTAATTATAACAATTAACACTCTCCCTCACTTGTGGGCTTTGAAATTTGAAAAATAGCCTACAAGTGGAATTTAATTTTAATTGGAGGAGAAACAGCAGAGATTCAAACTCATGACCTCCTTCTCTGATACTATCTTGAAAGTTGTTAAACCATCAATCAACCCAAAATCTTAAGCTGATGGGTTGGAGTAAATTTAATTACATCAACCAATATTTATATACTAGATTGGCCACCTTTTTGTGAGAGGTGTCTCTTGTTTCACCTGTTTTTTTGTATGCCATTTTGCTCTATTCTTTCGTTCTTTTATCGATGACGGTTTGGTTTATTATACAAAAAAAACATGTAAATATGCAAGCAGATTTACCATCCCAAACAATAAATGTCAACCATGTGGTATTACTCATTTATAAATGATGATTTCTATGTACATTTAATTAAAAGTTAGTTATTGTCAAACTACAGGCATTGATATTGCCCTTGTCTTCTTTGTTTTTGGAGAAAATAGAACTACAGAAGCTTGAGTCCTGCAGTGCATCAGAACGTGGGAGCGTAGGTGGTGCCTCTGCAACAACTTCTGCCGCTTCTGCACCTGGATTAAGGGACAACAGAGAAATTGAAAGCGACCGTGCGAATGGAGGACCAAGGATGAAGCAATTCTTTAAAGCAAAGGCGCATAAGAAGTTGATTGACATTTATGCCGACTGGCTCGAAAATTGATTTGACCAAAGACTGAGGCCTTCTCCATTGCTCACAAGTGGTTGAGAGCATAAAGGTTCTTCTAATACTTCTTAAGTGCATTTTGACATTTAAATGAATATAGGG

mRNA sequence

GGAAAAAAATTGGAATCCGAAAAGACTGAAAAAGCCACTCCCGTTTATGATCGGAACCCCACGTCGGAGTCCATTTCTTCTTCTCCGGTCAGTTTTCCGATCGATAGCTAGGGTTTCGCTCTCGTATATCTCCTCCTTACTTGTATTAACTTTCTGTTGTTTATCAGTTTTTTGGTTTATATATTTGTTGAATCTCGACTGTAAATTTGTTAGATTAAACCTCTTTTTGTTAGATTTCAGTTGCTGAAATTTGTTTAGAGATCTTCAAGAAATTCGTAAATATTGTACAGATATCTGTTATACCTGTCAATATATTGGATATATCATTTGCCGTTCCCAATTTCGTCGATTTTTTCCAAATTTGTGGAATTAGGGTTTCTATTCTGTCAGTTTTTTCGACGAATCGAGTTTTCCTTTCTTTTGTGCCAAATTTGAAATGAGTGTTCCTTATCCTCTTAACCAAATTACTCCTCCGGATCCTGAGGCTCTCGGCGATCGGCCGCCATTGCTTCCTCGACATTCTGATATTCTGAGGTCTGAAACTTTACCGAATTGGGGAATGCCTTCGAATTTTGAGATTCCACAATGGAACAATCTTAATAATAACCCTATGTTTAGACCTGCTTTTCACGATACTCGTAGATGGTTACCTTCAGGGCGTTCGAATGTTGATTTTCGGTCTGGAATATCGACAGAAATGGAAATGTGCAGACAGTTCCAGCGCAGGGGGGAATGTTCATATGGGGATCAGTGTCGTTTTCTTCATGGCATTCCTGAGAAAACTAGGGATGTTGGGTTCTCTAGCCAGATTTATGAGGCTAGAACAGTAGCTTCTGGTCATGTTATGGATCGAAGAAGGAGAGGGTCTGGTCAATTGGAAGAAACAAGATCAACAGTACAAACGATTGTTGCCTGCAGTGATACTCAAAAGCCTGAAAGTTGCAAAACCAGGCTCTGTTACCTCTGGCGGACGACTGGTCACTGCCCATATGGGGAGCTTTGTCGGTTTGCTCATGGAGAAGCAGAAAATAGAACTACAGAAGCTTGAGTCCTGCAGTGCATCAGAACGTGGGAGCGTAGGTGGTGCCTCTGCAACAACTTCTGCCGCTTCTGCACCTGGATTAAGGGACAACAGAGAAATTGAAAGCGACCGTGCGAATGGAGGACCAAGGATGAAGCAATTCTTTAAAGCAAAGGCGCATAAGAAGTTGATTGACATTTATGCCGACTGGCTCGAAAATTGATTTGACCAAAGACTGAGGCCTTCTCCATTGCTCACAAGTGGTTGAGAGCATAAAGGTTCTTCTAATACTTCTTAAGTGCATTTTGACATTTAAATGAATATAGGG

Coding sequence (CDS)

ATGAGTGTTCCTTATCCTCTTAACCAAATTACTCCTCCGGATCCTGAGGCTCTCGGCGATCGGCCGCCATTGCTTCCTCGACATTCTGATATTCTGAGGTCTGAAACTTTACCGAATTGGGGAATGCCTTCGAATTTTGAGATTCCACAATGGAACAATCTTAATAATAACCCTATGTTTAGACCTGCTTTTCACGATACTCGTAGATGGTTACCTTCAGGGCGTTCGAATGTTGATTTTCGGTCTGGAATATCGACAGAAATGGAAATGTGCAGACAGTTCCAGCGCAGGGGGGAATGTTCATATGGGGATCAGTGTCGTTTTCTTCATGGCATTCCTGAGAAAACTAGGGATGTTGGGTTCTCTAGCCAGATTTATGAGGCTAGAACAGTAGCTTCTGGTCATGTTATGGATCGAAGAAGGAGAGGGTCTGGTCAATTGGAAGAAACAAGATCAACAGTACAAACGATTGTTGCCTGCAGTGATACTCAAAAGCCTGAAAGTTGCAAAACCAGGCTCTGTTACCTCTGGCGGACGACTGGTCACTGCCCATATGGGGAGCTTTGTCGGTTTGCTCATGGAGAAGCAGAAAATAGAACTACAGAAGCTTGA

Protein sequence

MSVPYPLNQITPPDPEALGDRPPLLPRHSDILRSETLPNWGMPSNFEIPQWNNLNNNPMFRPAFHDTRRWLPSGRSNVDFRSGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA

Homology

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BLAST of Sed0002447 vs. NCBI nr
Match: XP_023513806.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 1.4e-56
Identity = 129/233 (55.36%), Postives = 154/233 (66.09%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLLPRHS--------DILRSETLPNWGMPSNFEIPQWN 60
           MS PYP +Q+TPPD EA G  PPL PR++            SE +P+  MPSNFEIPQWN
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLPPRYTVGRFPSFYRPTMSEVVPSRVMPSNFEIPQWN 60

Query: 61  NLN-----NNPMFRPAF---HDTRRWLPSGRSNVDF-------------RSGISTEMEMC 120
           N+N     N   +R A      TR WLPS R  +DF             R+G+STEM++C
Sbjct: 61  NVNIGLHDNELEWRYALASNDHTRGWLPSWR-GIDFHENRLPECPILNNRTGMSTEMKVC 120

Query: 121 RQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQLEETR 180
           RQFQRRG+C+YGDQCRFLH IPE T+D GFS+Q +E R VASGHVMD +     Q EE R
Sbjct: 121 RQFQRRGKCAYGDQCRFLHKIPENTKDFGFSTQNHEVRAVASGHVMDGKSM-FDQFEEVR 180

Query: 181 STVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           S VQT IVA S+   P +CKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 SKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 231

[Close]

BLAST of Sed0002447 vs. NCBI nr
Match: XP_023000378.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 224.9 bits (572), Expect = 6.1e-55
Identity = 129/237 (54.43%), Postives = 153/237 (64.56%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLL-----PRHS--------DILRSETLPNWGMPSNFE 60
           MS PYP +Q+TP D EA G  PPL      PR+S            SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNLN-----NNPMFRPAF---HDTRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN+N     N   +R A      TR WLPS R              V+ R+G++TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G+SSQ +E R VASGHVMDR+     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P SCKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. NCBI nr
Match: KAG7025772.1 (Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-54
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGD----RPPLLPRHSDILR---------SETLPNWGMPSNFE 60
           MS PYP +Q+TPPD EA G     RPP LP    + R         SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNN----LNNNPM---FRPAFHD-TRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN    L++N +   +  A +D TR WLPS R              V+ R+G+STE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPACPIVNSRTGMSTE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G SSQ +E R VASGHVMD +     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P +CKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. NCBI nr
Match: XP_022964047.1 (zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 222.2 bits (565), Expect = 3.9e-54
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGD----RPPLLPRHSDILR---------SETLPNWGMPSNFE 60
           MS PYP +Q+TPPD EA G     RPP LP    + R         SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNN----LNNNPM---FRPAFHD-TRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN    L++N +   +  A +D TR WLPS R              V+ R+G+STE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G SSQ +E R VASGHVMD +     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P +CKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. NCBI nr
Match: KAG6593433.1 (Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 5.2e-54
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGD----RPPLLPRHSDILR---------SETLPNWGMPSNFE 60
           MS PYP +Q+TPPD EA G     RPP LP    + R         SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNN----LNNNPM---FRPAFHD-TRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN    L++N +   +  A +D TR WLPS R              V+ R+G+STE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G SSQ +E R VASGHVMD +     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEIRAVASGHVMDGKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P +CKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot
Match: Q84UQ3 (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.3e-11
Identity = 41/119 (34.45%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 82  SGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRR 141
           SG + +   C++F     C YGD C FLH    K R+   S  I  + +V  G       
Sbjct: 166 SGRAYKGRHCKKFYTDEGCPYGDACTFLHDEQSKARE---SVAISLSPSVGGG------- 225

Query: 142 RGSGQLEETRSTVQTIVACSDT---QKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAE 198
            G G      +   +  A +     QKP + KTR+C  W  TG+CP+G  C FAHG AE
Sbjct: 226 GGGGSYNSAAAAAASASAAAGNGPMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAE 274

[Close]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot
Match: Q9LT81 (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-09
Identity = 42/131 (32.06%), Postives = 61/131 (46.56%), Query Frame = 0


Query: 72  PSGRSNVDFRSGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTV 131
           P   +N +    I   M++CR+F    EC YGD+C F+H    K R+   S ++ E+  +
Sbjct: 170 PVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE--DSGKLRESSVI 229

Query: 132 ASGHVM--DRRRRGSGQLEETRS---TVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYG 191
           + G           S  +E  R     V   +      K    KTRLC  +  TG CP+G
Sbjct: 230 SVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFG 289

Query: 192 ELCRFAHGEAE 198
           + C FAHG+AE
Sbjct: 290 DKCHFAHGQAE 298

[Close]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot
Match: Q9LQM3 (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-08
Identity = 38/128 (29.69%), Postives = 52/128 (40.62%), Query Frame = 0


Query: 82  SGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRD------------VGFSSQIYEAR 141
           SG S +   C++F     C YG+ C FLH    + R+             G         
Sbjct: 169 SGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGS 228

Query: 142 TVASGHVMDRRRRGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELC 198
               G   +    G G    + S +Q +       KP + KTR+C  W  TG+CP+G  C
Sbjct: 229 VGGGGSSSNVVVLGGGGGSGSGSGIQIL-------KPSNWKTRICNKWEITGYCPFGAKC 288

[Close]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot
Match: Q5PP65 (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-06
Identity = 38/113 (33.63%), Postives = 48/113 (42.48%), Query Frame = 0


Query: 89  EMCRQFQRRGECSY-GDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 148
           ++C +F R G C Y    C F H   E            E  T AS     R R      
Sbjct: 75  KLCFKF-RAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEAS-----RNRESFAVS 134

Query: 149 EETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRT 201
              R  V      + T K  + KTR+C  W+TTG+CP+G  C FAHG +E  T
Sbjct: 135 LGPRGNV------AQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHT 175

[Close]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot
Match: Q7F8R0 (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-06
Identity = 33/123 (26.83%), Postives = 50/123 (40.65%), Query Frame = 0


Query: 75  RSNVDFRSGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASG 134
           R +  F++G+ ++ + C +F     C +G+ C FLH  P            Y+A      
Sbjct: 23  RESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPGG----------YQA------ 82

Query: 135 HVMDRRRRGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHG 194
            V      G   +      +    A  D     + KTRLC  + T   C +G+ C FAHG
Sbjct: 83  -VAKMTNLGGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHG 128

Query: 195 EAE 198
           E E
Sbjct: 143 ERE 128

[Close]

BLAST of Sed0002447 vs. ExPASy TrEMBL
Match: A0A6J1KMG0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111494633 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.9e-55
Identity = 129/237 (54.43%), Postives = 153/237 (64.56%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLL-----PRHS--------DILRSETLPNWGMPSNFE 60
           MS PYP +Q+TP D EA G  PPL      PR+S            SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPSDHEARGVWPPLRPPPWPPRYSIGRFPSFYQPTMSEVVPSRVMPSNFE 60

Query: 61  IPQWNNLN-----NNPMFRPAF---HDTRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN+N     N   +R A      TR WLPS R              V+ R+G++TE
Sbjct: 61  IPQWNNVNIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMATE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G+SSQ +E R VASGHVMDR+     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGYSSQNHEVRAVASGHVMDRKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P SCKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPVPVSCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. ExPASy TrEMBL
Match: A0A6J1HGS0 (zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111464190 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.9e-54
Identity = 129/237 (54.43%), Postives = 155/237 (65.40%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGD----RPPLLPRHSDILR---------SETLPNWGMPSNFE 60
           MS PYP +Q+TPPD EA G     RPP LP    + R         SE +P+  MPSNFE
Sbjct: 1   MSDPYPFHQVTPPDHEARGVWPPLRPPPLPPRYTVGRFPSFYQPTMSEIVPSRVMPSNFE 60

Query: 61  IPQWNN----LNNNPM---FRPAFHD-TRRWLPSGRS------------NVDFRSGISTE 120
           IPQWNN    L++N +   +  A +D TR WLPS R              V+ R+G+STE
Sbjct: 61  IPQWNNVHIGLHDNELEWRYALASNDHTRGWLPSWRGIEFHENRLPECPIVNSRTGMSTE 120

Query: 121 MEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 180
           M++CRQFQRRG+C+YGDQCRFLH IPE T+D G SSQ +E R VASGHVMD +     Q 
Sbjct: 121 MKVCRQFQRRGKCAYGDQCRFLHKIPENTKDFGSSSQNHEVRAVASGHVMDGKSM-FDQF 180

Query: 181 EETRSTVQT-IVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           EE RS VQT IVA S+   P +CKTRLCYLW+TTGHC YGE+CRFAHGEAE +  E+
Sbjct: 181 EEVRSKVQTKIVARSEIPMPVNCKTRLCYLWQTTGHCSYGEVCRFAHGEAELQKLES 236

[Close]

BLAST of Sed0002447 vs. ExPASy TrEMBL
Match: A0A6J1JXX2 (uncharacterized protein LOC111488499 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111488499 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 7.8e-48
Identity = 119/214 (55.61%), Postives = 134/214 (62.62%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLLPRHSDILRSETLPNWGMPSNFEIPQWNNLN----- 60
           MS  Y  N+ITPP PEA GD   L P HSD      L    MPS   IP  NN N     
Sbjct: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD----SGLQQRTMPSKSRIPPSNNRNIGYDH 60

Query: 61  -NNPMFRPAFHDTRRWLPSGRSNVDFR----SGISTEMEMCRQFQRRGECSYGDQCRFLH 120
               M  PA +DT R LPS R  ++F     SG S EM+ CRQFQRR +C+YGDQCR+LH
Sbjct: 61  ELGCMSTPALNDTHRRLPSLR-GIEFHEGQLSGRSNEMKACRQFQRRRKCAYGDQCRYLH 120

Query: 121 GIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQLEETRSTVQT-IVACSDTQKPESC 180
            IPEKTRD G ++Q YE R V SGHVM+ RRRG  QLEE RS VQT IV   +  KP  C
Sbjct: 121 EIPEKTRDFGSTTQNYEVRIVDSGHVMN-RRRGLDQLEEVRSKVQTEIVVRGEIPKPVRC 180

Query: 181 KTRLCYLWRTTGHCPYGELCRFAHGEAENRTTEA 204
           KTRLCY  + TG CPYG +CR AH EAENRTT+A
Sbjct: 181 KTRLCYPLQKTGSCPYGAVCRIAHEEAENRTTKA 208

[Close]

BLAST of Sed0002447 vs. ExPASy TrEMBL
Match: A0A6J1JSF5 (uncharacterized protein LOC111488499 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488499 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-45
Identity = 119/226 (52.65%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLLPRHSDILRSETLPNWGMPSNFEIPQWNNLN----- 60
           MS  Y  N+ITPP PEA GD   L P HSD      L    MPS   IP  NN N     
Sbjct: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD----SGLQQRTMPSKSRIPPSNNRNIGYDH 60

Query: 61  -NNPMFRPAFHDTRRWLPSGRSNVDFR----SGISTEMEMCRQFQRRGECSYGDQCRFLH 120
               M  PA +DT R LPS R  ++F     SG S EM+ CRQFQRR +C+YGDQCR+LH
Sbjct: 61  ELGCMSTPALNDTHRRLPSLR-GIEFHEGQLSGRSNEMKACRQFQRRRKCAYGDQCRYLH 120

Query: 121 GIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQLEETRSTVQT-IVACSDTQKPESC 180
            IPEKTRD G ++Q YE R V SGHVM+ RRRG  QLEE RS VQT IV   +  KP  C
Sbjct: 121 EIPEKTRDFGSTTQNYEVRIVDSGHVMN-RRRGLDQLEEVRSKVQTEIVVRGEIPKPVRC 180

Query: 181 KTRLCYLWRTTGHCPYGELCRFAHGEA------------ENRTTEA 204
           KTRLCY  + TG CPYG +CR AH EA            ENRTT+A
Sbjct: 181 KTRLCYPLQKTGSCPYGAVCRIAHEEAGIDIVLVFFVFGENRTTKA 220

[Close]

BLAST of Sed0002447 vs. ExPASy TrEMBL
Match: A0A6J1JNJ8 (zinc finger CCCH domain-containing protein 39-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488499 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 114/208 (54.81%), Postives = 128/208 (61.54%), Query Frame = 0


Query: 1   MSVPYPLNQITPPDPEALGDRPPLLPRHSDILRSETLPNWGMPSNFEIPQWNNLN----- 60
           MS  Y  N+ITPP PEA GD   L P HSD      L    MPS   IP  NN N     
Sbjct: 1   MSATYRFNEITPPVPEARGDSSALPPPHSD----SGLQQRTMPSKSRIPPSNNRNIGYDH 60

Query: 61  -NNPMFRPAFHDTRRWLPSGRSNVDFR----SGISTEMEMCRQFQRRGECSYGDQCRFLH 120
               M  PA +DT R LPS R  ++F     SG S EM+ CRQFQRR +C+YGDQCR+LH
Sbjct: 61  ELGCMSTPALNDTHRRLPSLR-GIEFHEGQLSGRSNEMKACRQFQRRRKCAYGDQCRYLH 120

Query: 121 GIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQLEETRSTVQT-IVACSDTQKPESC 180
            IPEKTRD G ++Q YE R V SGHVM+ RRRG  QLEE RS VQT IV   +  KP  C
Sbjct: 121 EIPEKTRDFGSTTQNYEVRIVDSGHVMN-RRRGLDQLEEVRSKVQTEIVVRGEIPKPVRC 180

Query: 181 KTRLCYLWRTTGHCPYGELCRFAHGEAE 198
           KTRLCY  + TG CPYG +CR AH EAE
Sbjct: 181 KTRLCYPLQKTGSCPYGAVCRIAHEEAE 202

[Close]

BLAST of Sed0002447 vs. TAIR 10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10
Identity = 42/131 (32.06%), Postives = 61/131 (46.56%), Query Frame = 0


Query: 72  PSGRSNVDFRSGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRDVGFSSQIYEARTV 131
           P   +N +    I   M++CR+F    EC YGD+C F+H    K R+   S ++ E+  +
Sbjct: 170 PVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRE--DSGKLRESSVI 229

Query: 132 ASGHVM--DRRRRGSGQLEETRS---TVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYG 191
           + G           S  +E  R     V   +      K    KTRLC  +  TG CP+G
Sbjct: 230 SVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFG 289

Query: 192 ELCRFAHGEAE 198
           + C FAHG+AE
Sbjct: 290 DKCHFAHGQAE 298

[Close]

BLAST of Sed0002447 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 38/128 (29.69%), Postives = 52/128 (40.62%), Query Frame = 0


Query: 82  SGISTEMEMCRQFQRRGECSYGDQCRFLHGIPEKTRD------------VGFSSQIYEAR 141
           SG S +   C++F     C YG+ C FLH    + R+             G         
Sbjct: 169 SGRSFKGRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGS 228

Query: 142 TVASGHVMDRRRRGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELC 198
               G   +    G G    + S +Q +       KP + KTR+C  W  TG+CP+G  C
Sbjct: 229 VGGGGSSSNVVVLGGGGGSGSGSGIQIL-------KPSNWKTRICNKWEITGYCPFGAKC 288

[Close]

BLAST of Sed0002447 vs. TAIR 10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 38/113 (33.63%), Postives = 48/113 (42.48%), Query Frame = 0


Query: 89  EMCRQFQRRGECSY-GDQCRFLHGIPEKTRDVGFSSQIYEARTVASGHVMDRRRRGSGQL 148
           ++C +F R G C Y    C F H   E            E  T AS     R R      
Sbjct: 75  KLCFKF-RAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEAS-----RNRESFAVS 134

Query: 149 EETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENRT 201
              R  V      + T K  + KTR+C  W+TTG+CP+G  C FAHG +E  T
Sbjct: 135 LGPRGNV------AQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHT 175

[Close]

BLAST of Sed0002447 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-05
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 142 RGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENR 200
           RG G+ E+    ++      +       KT LC  W+ TG CPYG+ C+FAHG  E R
Sbjct: 201 RGGGKKEDQEEEIEV-----EVYNQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELR 253

[Close]

BLAST of Sed0002447 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-05
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 0


Query: 142 RGSGQLEETRSTVQTIVACSDTQKPESCKTRLCYLWRTTGHCPYGELCRFAHGEAENR 200
           RG G+ E+    ++      +       KT LC  W+ TG CPYG+ C+FAHG  E R
Sbjct: 200 RGGGKKEDQEEEIEV-----EVYNQGMTKTELCNKWQETGTCPYGDHCQFAHGIKELR 252

The following BLAST results are available for this feature:

BLAST of Sed0002447 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513806.1	1.4e-56	55.36	zinc finger CCCH domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000378.1	6.1e-55	54.43	zinc finger CCCH domain-containing protein 39-like [Cucurbita maxima]	[more]
KAG7025772.1	3.9e-54	54.43	Zinc finger CCCH domain-containing protein 39 [Cucurbita argyrosperma subsp. arg...	[more]
XP_022964047.1	3.9e-54	54.43	zinc finger CCCH domain-containing protein 39-like [Cucurbita moschata]	[more]
KAG6593433.1	5.2e-54	54.43	Zinc finger CCCH domain-containing protein 39, partial [Cucurbita argyrosperma s...	[more]

BLAST of Sed0002447 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84UQ3	3.3e-11	34.45	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
Q9LT81	4.0e-09	32.06	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LQM3	5.8e-08	29.69	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q5PP65	2.4e-06	33.63	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q7F8R0	7.1e-06	26.83	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Sed0002447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMG0	2.9e-55	54.43	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HGS0	1.9e-54	54.43	zinc finger CCCH domain-containing protein 39-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JXX2	7.8e-48	55.61	uncharacterized protein LOC111488499 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JSF5	3.6e-45	52.65	uncharacterized protein LOC111488499 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JNJ8	1.1e-44	54.81	zinc finger CCCH domain-containing protein 39-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Sed0002447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19360.1	2.9e-10	32.06	Zinc finger (CCCH-type) family protein	[more]
AT1G32360.1	4.1e-09	29.69	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	1.7e-07	33.63	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.1	4.7e-05	37.93	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G68200.2	4.7e-05	37.93	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 168..195 e-value: 3.2E-6 score: 36.7 coord: 85..112 e-value: 1.5E-6 score: 37.8
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 170..195 e-value: 1.8E-9 score: 37.3 coord: 91..111 e-value: 3.8E-9 score: 36.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 168..196 score: 14.999652
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 85..113 score: 16.464352
None	No IPR available	GENE3D	4.10.1000.10		coord: 87..117 e-value: 4.0E-9 score: 37.7 coord: 161..201 e-value: 1.7E-11 score: 45.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR12547:SF121	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 79..200
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 79..200
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 86..114
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 166..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002447.1	Sed0002447.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding