Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTTACTCCGATCATGACCCTGATTGACAGATTTCTGCTCACCGATGATATGATAAACAAATTTGATTGTGCCAAGGCTCGCAGGCTGGAGAGGGTCACATCTGACCACTATCCCATTTGCCTTCCTCTTAGTAAAGAAAGATGGGGCCCGACCCCTTTTAGATTTATGAACACATGGTTGGATCATCGCTCTTTTACCCCCCTGTTGGAGAAATGGTGGTTGGATAATGCTATTTGTGATTGGCCTGGACATGGATTCATCCAAAAGCTCAAAGCTTTTAAGTTGATTGTTAAGGAATGGAATCACAGAACTTTTAGTCATCATAAGGCTTTTTGCCTTGCTTTCAAAGAAGAGCTTGACTCCATTGACAACGAAGAAGAATTGGCTAATTTAACCACAAATGAATTGCACAGAAGGCTTGAAATCAAGGCTGAGATTATGGAATTGACTTCTAGGGAAGATGCTCTCCGGCGGCAAAGGTGCACAGCGCAGTGA
mRNA sequence
ATGCGAGTTACTCCGATCATGACCCTGATTGACAGATTTCTGCTCACCGATGATATGATAAACAAATTTGATTGTGCCAAGGCTCGCAGGCTGGAGAGGGTCACATCTGACCACTATCCCATTTGCCTTCCTCTTAGTAAAGAAAGATGGGGCCCGACCCCTTTTAGATTTATGAACACATGGTTGGATCATCGCTCTTTTACCCCCCTGTTGGAGAAATGGTGGTTGGATAATGCTATTTGTGATTGGCCTGGACATGGATTCATCCAAAAGCTCAAAGCTTTTAAGTTGATTGTTAAGGAATGGAATCACAGAACTTTTAGTCATCATAAGGCTTTTTGCCTTGCTTTCAAAGAAGAGCTTGACTCCATTGACAACGAAGAAGAATTGGCTAATTTAACCACAAATGAATTGCACAGAAGGCTTGAAATCAAGGCTGAGATTATGGAATTGACTTCTAGGGAAGATGCTCTCCGGCGGCAAAGGTGCACAGCGCAGTGA
Coding sequence (CDS)
ATGCGAGTTACTCCGATCATGACCCTGATTGACAGATTTCTGCTCACCGATGATATGATAAACAAATTTGATTGTGCCAAGGCTCGCAGGCTGGAGAGGGTCACATCTGACCACTATCCCATTTGCCTTCCTCTTAGTAAAGAAAGATGGGGCCCGACCCCTTTTAGATTTATGAACACATGGTTGGATCATCGCTCTTTTACCCCCCTGTTGGAGAAATGGTGGTTGGATAATGCTATTTGTGATTGGCCTGGACATGGATTCATCCAAAAGCTCAAAGCTTTTAAGTTGATTGTTAAGGAATGGAATCACAGAACTTTTAGTCATCATAAGGCTTTTTGCCTTGCTTTCAAAGAAGAGCTTGACTCCATTGACAACGAAGAAGAATTGGCTAATTTAACCACAAATGAATTGCACAGAAGGCTTGAAATCAAGGCTGAGATTATGGAATTGACTTCTAGGGAAGATGCTCTCCGGCGGCAAAGGTGCACAGCGCAGTGA
Protein sequence
MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRCTAQ
Homology
BLAST of Sed0002431 vs. NCBI nr
Match:
XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])
HSP 1 Score: 128.6 bits (322), Expect = 4.9e-26
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 0
Query: 8 TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSF 67
+LID FLLT+ I+K A+R+ R TSDH+PI L + WG TPFRF N WL H++F
Sbjct: 191 SLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSHKTF 250
Query: 68 TPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEEL----DS 127
P LE WW + + WPGHG + KLK+ K +K W + H + KE+L +S
Sbjct: 251 KPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLW----ITEHFRCIHSQKEDLTNLMNS 310
Query: 128 IDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC 164
+D+ E +T ++ R++ K +++ + ++E+A RQRC
Sbjct: 311 LDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEEAFWRQRC 346
BLAST of Sed0002431 vs. NCBI nr
Match:
KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 115.2 bits (287), Expect = 5.6e-22
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
+R+ P + +DRFLL+ N F +R +ER+ SDH+PI L + +WGP PFR N+
Sbjct: 749 LRLNPTYSCLDRFLLSKGWENTFGLHTSRTMERIVSDHFPIILESPQIKWGPCPFRLNNS 808
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
L + F WW ++ +PG+ FIQ LK+ ++KEW H + + A EE
Sbjct: 809 SLKDKEFQKNFPDWWNNSKQFGFPGYAFIQSLKSLSKLIKEWQHNKVNLYDAKRKVLLEE 868
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
+DSID E N++T +R+ +K+E++ + + + + QR
Sbjct: 869 IDSIDKLELQGNMSTIHHQKRISLKSELLSIENNQALIWHQR 910
BLAST of Sed0002431 vs. NCBI nr
Match:
RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])
HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 60/162 (37.04%), Postives = 82/162 (50.62%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
M+V PI +DRFL + + + F L R TSDH PICL + WGPTPFRF N
Sbjct: 37 MQVDPICKRLDRFLFSSEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENM 96
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
WL H F WW + + W GH F++KLK K +KEWN R F + +
Sbjct: 97 WLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTD 156
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
L ID E+ NL + R+ + E+ +L +E+ RQ+
Sbjct: 157 LGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQK 198
BLAST of Sed0002431 vs. NCBI nr
Match:
RVX12042.1 (Splicing factor 3A subunit 2 [Vitis vinifera])
HSP 1 Score: 110.5 bits (275), Expect = 1.4e-20
Identity = 60/162 (37.04%), Postives = 82/162 (50.62%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
M+V PI +DRFL + + + F L R TSDH PICL + WGPTPFRF N
Sbjct: 586 MQVDPICKRLDRFLFSSEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENM 645
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
WL H F WW + + W GH F++KLK K +KEWN R F + +
Sbjct: 646 WLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTD 705
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
L ID E+ NL + R+ + E+ +L +E+ RQ+
Sbjct: 706 LGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQK 747
BLAST of Sed0002431 vs. NCBI nr
Match:
RVW51134.1 (SWI/SNF complex subunit SWI3C [Vitis vinifera])
HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 60/162 (37.04%), Postives = 83/162 (51.23%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
M+V PI +DRFL + + + F L R TSDH PICL + WGPTPFRF N
Sbjct: 302 MQVDPICKRLDRFLFSAEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENM 361
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
WL H F WW + ++ W GH F++KLK K +KEWN R F + +
Sbjct: 362 WLLHPEFKEKFRDWWQECSVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTD 421
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
L ID E+ NL + R+ + E+ +L +E+ RQ+
Sbjct: 422 LGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQK 463
BLAST of Sed0002431 vs. ExPASy TrEMBL
Match:
A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 2.4e-26
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 0
Query: 8 TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSF 67
+LID FLLT+ I+K A+R+ R TSDH+PI L + WG TPFRF N WL H++F
Sbjct: 191 SLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSHKTF 250
Query: 68 TPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEEL----DS 127
P LE WW + + WPGHG + KLK+ K +K W + H + KE+L +S
Sbjct: 251 KPFLETWWGNKPLHGWPGHGLMMKLKSLKYAIKLW----ITEHFRCIHSQKEDLTNLMNS 310
Query: 128 IDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC 164
+D+ E +T ++ R++ K +++ + ++E+A RQRC
Sbjct: 311 LDDLEGSQPVTPDQSRARIQAKEDLLSVVAKEEAFWRQRC 346
BLAST of Sed0002431 vs. ExPASy TrEMBL
Match:
A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
+R+ P + +DRFLL+ N F +R +ER+ SDH+PI L + +WGP PFR N+
Sbjct: 749 LRLNPTYSCLDRFLLSKGWENTFGLHTSRTMERIVSDHFPIILESPQIKWGPCPFRLNNS 808
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
L + F WW ++ +PG+ FIQ LK+ ++KEW H + + A EE
Sbjct: 809 SLKDKEFQKNFPDWWNNSKQFGFPGYAFIQSLKSLSKLIKEWQHNKVNLYDAKRKVLLEE 868
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
+DSID E N++T +R+ +K+E++ + + + + QR
Sbjct: 869 IDSIDKLELQGNMSTIHHQKRISLKSELLSIENNQALIWHQR 910
BLAST of Sed0002431 vs. ExPASy TrEMBL
Match:
A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 0
Query: 2 RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTW 61
R +P+ + +DRFL T++ F + L R+ SDH P+ + + +WGP PFRF N W
Sbjct: 538 RASPVCSRLDRFLFTNNWNIIFPFVRQELLVRIVSDHSPVVIDSNPPKWGPGPFRFDNHW 597
Query: 62 LDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEEL 121
LDH+SF+ E+WW + WPG F++KLK + VKEW+ TF ++A +A + L
Sbjct: 598 LDHKSFSKCFERWWKEEINDGWPGTKFMKKLKILQGKVKEWSKSTFGQNRAKKIALEGRL 657
Query: 122 DSIDNEEELANLTTNELHRRLEIKAEIMELTSRED 157
+D E + + L R ++K E L E+
Sbjct: 658 GVLDKLEGTSFWNQSLLDERRKLKEEWKWLNFEEE 692
BLAST of Sed0002431 vs. ExPASy TrEMBL
Match:
A0A803QQM3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 0
Query: 2 RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTW 61
R +P+ + +DRFL +++ + + L R+ SDH P+ + + +WGP PFRF N W
Sbjct: 1111 RASPVCSRLDRFLFSNNWNVIYPFVRQEMLVRLVSDHSPVVIDSNPPKWGPGPFRFDNHW 1170
Query: 62 LDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEEL 121
L+H+SF+ E WW + WPG F++KLK + VKEW+ TF +KA +A + L
Sbjct: 1171 LEHKSFSKCFESWWKEEINDGWPGTKFMKKLKLLQGKVKEWSKSTFGQNKATKIALEGRL 1230
Query: 122 DSIDNEEELANLTTNELHRRLEIKAEIMELTSRED 157
+D E ++ + L R ++K E +L E+
Sbjct: 1231 GVLDRLEGTSSWNQSVLDERRKLKEEWQQLHFEEE 1265
BLAST of Sed0002431 vs. ExPASy TrEMBL
Match:
A0A438JSU9 (Splicing factor 3A subunit 2 OS=Vitis vinifera OX=29760 GN=sf3a2 PE=3 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 6.6e-21
Identity = 60/162 (37.04%), Postives = 82/162 (50.62%), Query Frame = 0
Query: 1 MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNT 60
M+V PI +DRFL + + + F L R TSDH PICL + WGPTPFRF N
Sbjct: 586 MQVDPICKRLDRFLFSSEWDSFFSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENM 645
Query: 61 WLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHHKAFCLAFKEE 120
WL H F WW + + W GH F++KLK K +KEWN R F + +
Sbjct: 646 WLLHPEFKEKFRDWWQECTVEGWEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTD 705
Query: 121 LDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR 163
L ID E+ NL + R+ + E+ +L +E+ RQ+
Sbjct: 706 LGRIDRIEQEGNLNLELVSERILRRKELEDLLLKEEVQWRQK 747
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022158956.1 | 4.9e-26 | 39.38 | uncharacterized protein LOC111025405 [Momordica charantia] | [more] |
| KAA0035247.1 | 5.6e-22 | 33.95 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224... | [more] |
| RVW19678.1 | 1.4e-20 | 37.04 | Structural maintenance of chromosomes protein 3, partial [Vitis vinifera] | [more] |
| RVX12042.1 | 1.4e-20 | 37.04 | Splicing factor 3A subunit 2 [Vitis vinifera] | [more] |
| RVW51134.1 | 1.8e-20 | 37.04 | SWI/SNF complex subunit SWI3C [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1E2G6 | 2.4e-26 | 39.38 | uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| A0A5D3DFM9 | 2.7e-22 | 33.95 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A803QEA6 | 3.9e-21 | 35.48 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
| A0A803QQM3 | 5.1e-21 | 34.19 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
| A0A438JSU9 | 6.6e-21 | 37.04 | Splicing factor 3A subunit 2 OS=Vitis vinifera OX=29760 GN=sf3a2 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
