Sed0002404 (gene) Chayote v1

Overview


Name	Sed0002404
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF 3339)
Location	LG12: 34610381 .. 34610593 (+)
RNA-Seq Expression	Sed0002404
Synteny	Sed0002404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTTCTGTTCGTGGTGCTGAGTCCGGGGCTGCTGTTTCAGATCCCCGGCAAAGGGGGCAAAGTGGTGGAGTTCGGGAACCTGCAGACCAGTGGGGCTTCCATACTTGTGCACGCCGTCATCTACTTCGGCCTCATCACCATCTTACTTATTGCCGTCGGTGTTCACATCTACACCGGCTAA

mRNA sequence

ATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTTCTGTTCGTGGTGCTGAGTCCGGGGCTGCTGTTTCAGATCCCCGGCAAAGGGGGCAAAGTGGTGGAGTTCGGGAACCTGCAGACCAGTGGGGCTTCCATACTTGTGCACGCCGTCATCTACTTCGGCCTCATCACCATCTTACTTATTGCCGTCGGTGTTCACATCTACACCGGCTAA

Coding sequence (CDS)

ATGGCAGATTGGGGGCCGGTGATTATAGCGGTGGTTCTGTTCGTGGTGCTGAGTCCGGGGCTGCTGTTTCAGATCCCCGGCAAAGGGGGCAAAGTGGTGGAGTTCGGGAACCTGCAGACCAGTGGGGCTTCCATACTTGTGCACGCCGTCATCTACTTCGGCCTCATCACCATCTTACTTATTGCCGTCGGTGTTCACATCTACACCGGCTAA

Protein sequence

MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILLIAVGVHIYTG

Homology

[Close]

BLAST of Sed0002404 vs. NCBI nr
Match: RRT80049.1 (hypothetical protein B296_00004232 [Ensete ventricosum] >RWW84345.1 hypothetical protein BHE74_00007053 [Ensete ventricosum] >RZR70491.1 hypothetical protein BHM03_00000307 [Ensete ventricosum])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGNLQTSG SILVHAVIYF LITI L
Sbjct: 1  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNLQTSGVSILVHAVIYFALITIFL 60

Query: 61 IAVGVHIYTG 71
          IAVGVH+YTG
Sbjct: 61 IAVGVHVYTG 70

[Close]

BLAST of Sed0002404 vs. NCBI nr
Match: RWV99467.1 (hypothetical protein GW17_00037624, partial [Ensete ventricosum])

HSP 1 Score: 124.4 bits (311), Expect = 3.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
           MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGNLQTSG SILVHAVIYF LITI L
Sbjct: 60  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNLQTSGVSILVHAVIYFALITIFL 119

Query: 61  IAVGVHIYTG 71
           IAVGVH+YTG
Sbjct: 120 IAVGVHVYTG 129

[Close]

BLAST of Sed0002404 vs. NCBI nr
Match: XP_013446994.1 (uncharacterized protein LOC25502017 [Medicago truncatula] >KEH21021.1 transmembrane protein, putative [Medicago truncatula] >RHN43299.1 hypothetical protein MtrunA17_Chr8g0386301 [Medicago truncatula])

HSP 1 Score: 123.6 bits (309), Expect = 6.6e-25
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPVIIAVVLFV+LSPGLLFQIPG+ GKV+EFGN+QTSGASILVHA+IYFGLITILL
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPGR-GKVIEFGNMQTSGASILVHAIIYFGLITILL 60

Query: 61 IAVGVHIYTG 71
          IAVGVHIYTG
Sbjct: 61 IAVGVHIYTG 69

[Close]

BLAST of Sed0002404 vs. NCBI nr
Match: XP_009379975.1 (PREDICTED: uncharacterized protein LOC103968468 [Musa acuminata subsp. malaccensis] >CAG1853774.1 unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGN QTSG SILVHAVIYF LITI L
Sbjct: 1  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNFQTSGVSILVHAVIYFALITIFL 60

Query: 61 IAVGVHIYTG 71
          IAVGVH+YTG
Sbjct: 61 IAVGVHVYTG 70

[Close]

BLAST of Sed0002404 vs. NCBI nr
Match: XP_004503745.1 (uncharacterized protein LOC101508777 [Cicer arietinum])

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPVIIAVVLFV+LSPGLLFQIPG+ G+V+EFGN+QTSGASILVHA+IYFGLITILL
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPGR-GRVIEFGNMQTSGASILVHAIIYFGLITILL 60

Query: 61 IAVGVHIYTG 71
          IA+GVHIYTG
Sbjct: 61 IAIGVHIYTG 69

[Close]

BLAST of Sed0002404 vs. ExPASy TrEMBL
Match: A0A427AUU6 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00004232 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGNLQTSG SILVHAVIYF LITI L
Sbjct: 1  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNLQTSGVSILVHAVIYFALITIFL 60

Query: 61 IAVGVHIYTG 71
          IAVGVH+YTG
Sbjct: 61 IAVGVHVYTG 70

[Close]

BLAST of Sed0002404 vs. ExPASy TrEMBL
Match: A0A444DMX7 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00037624 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
           MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGNLQTSG SILVHAVIYF LITI L
Sbjct: 60  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNLQTSGVSILVHAVIYFALITIFL 119

Query: 61  IAVGVHIYTG 71
           IAVGVH+YTG
Sbjct: 120 IAVGVHVYTG 129

[Close]

BLAST of Sed0002404 vs. ExPASy TrEMBL
Match: A0A072TV19 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25502017 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPVIIAVVLFV+LSPGLLFQIPG+ GKV+EFGN+QTSGASILVHA+IYFGLITILL
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPGR-GKVIEFGNMQTSGASILVHAIIYFGLITILL 60

Query: 61 IAVGVHIYTG 71
          IAVGVHIYTG
Sbjct: 61 IAVGVHIYTG 69

[Close]

BLAST of Sed0002404 vs. ExPASy TrEMBL
Match: M0RIX4 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103968468 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.4e-25
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV++AVVLFV+LSPGLLFQIPGKGG++VEFGN QTSG SILVHAVIYF LITI L
Sbjct: 1  MADWGPVVVAVVLFVLLSPGLLFQIPGKGGRLVEFGNFQTSGVSILVHAVIYFALITIFL 60

Query: 61 IAVGVHIYTG 71
          IAVGVH+YTG
Sbjct: 61 IAVGVHVYTG 70

[Close]

BLAST of Sed0002404 vs. ExPASy TrEMBL
Match: A0A1S2YFK1 (uncharacterized protein LOC101508777 OS=Cicer arietinum OX=3827 GN=LOC101508777 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.3e-25
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPVIIAVVLFV+LSPGLLFQIPG+ G+V+EFGN+QTSGASILVHA+IYFGLITILL
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPGR-GRVIEFGNMQTSGASILVHAIIYFGLITILL 60

Query: 61 IAVGVHIYTG 71
          IA+GVHIYTG
Sbjct: 61 IAIGVHIYTG 69

[Close]

BLAST of Sed0002404 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-25
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV+IAV+LFVVLSPGLLFQIP  GG+VVEFGN+QTSGASILVHA+I+FGLITI  
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPA-GGRVVEFGNMQTSGASILVHAIIFFGLITIFT 60

Query: 61 IAVGVHIYTG 71
          IA+ VHIY+G
Sbjct: 61 IAINVHIYSG 69

[Close]

BLAST of Sed0002404 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-24
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          MADWGPV++AV+LFV+L+PGLLFQIP + G+VVEFGN+QTSGASILVH +I+FGLITI  
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPAR-GRVVEFGNMQTSGASILVHTIIFFGLITIFT 60

Query: 61 IAVGVHIYTG 71
          IA+ +HIYTG
Sbjct: 61 IAIRLHIYTG 69

[Close]

BLAST of Sed0002404 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 44/67 (65.67%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILLI 61
          ADWGPVI+AV LF++LSPGLLFQ+P +  +V+EFGN+ TSG SILVHA+IYF ++TIL+I
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPAR-TRVMEFGNMSTSGISILVHAIIYFCILTILII 62

Query: 62 AVGVHIY 69
          A+ +HI+
Sbjct: 63 AIQIHIH 68

[Close]

BLAST of Sed0002404 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 89.7 bits (221), Expect = 9.8e-19
Identity = 40/70 (57.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILL 60
          M+DWGPV++ V+LFV+L+PGLLFQ+PG+  K VEFGN QTS  S++VH+++YF L+ + L
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGR-QKYVEFGNFQTSAVSVIVHSLLYFSLVCVFL 60

Query: 61 IAVGVHIYTG 71
          +A+ +HIY G
Sbjct: 61 LALKIHIYIG 69

[Close]

BLAST of Sed0002404 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 88.6 bits (218), Expect = 2.2e-18
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVVLSPGLLFQIPGKGGKVVEFGNLQTSGASILVHAVIYFGLITILLI 61
          ADWGPV +AVVLFVVLSPGLLFQ+P +  +V+E GN+ TSG SILVHA+++F +ITIL+I
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPAR-RRVLECGNMTTSGISILVHAILFFAIITILVI 63

Query: 62 AVGVHIY 69
          A+ +HI+
Sbjct: 64 AIQIHIH 69

The following BLAST results are available for this feature:

BLAST of Sed0002404 vs. NCBI nr


Match Name	E-value	Identity	Description
RRT80049.1	3.9e-25	87.14	hypothetical protein B296_00004232 [Ensete ventricosum] >RWW84345.1 hypothetical...	[more]
RWV99467.1	3.9e-25	87.14	hypothetical protein GW17_00037624, partial [Ensete ventricosum]	[more]
XP_013446994.1	6.6e-25	91.43	uncharacterized protein LOC25502017 [Medicago truncatula] >KEH21021.1 transmembr...	[more]
XP_009379975.1	1.1e-24	85.71	PREDICTED: uncharacterized protein LOC103968468 [Musa acuminata subsp. malaccens...	[more]
XP_004503745.1	1.9e-24	88.57	uncharacterized protein LOC101508777 [Cicer arietinum]	[more]

BLAST of Sed0002404 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A427AUU6	1.9e-25	87.14	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00004232 PE=4 SV=1	[more]
A0A444DMX7	1.9e-25	87.14	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0003762...	[more]
A0A072TV19	3.2e-25	91.43	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25502017 PE=4 ...	[more]
M0RIX4	5.4e-25	85.71	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103968...	[more]
A0A1S2YFK1	9.3e-25	88.57	uncharacterized protein LOC101508777 OS=Cicer arietinum OX=3827 GN=LOC101508777 ...	[more]

BLAST of Sed0002404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63500.1	1.4e-25	81.43	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	5.9e-24	74.29	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	2.6e-19	65.67	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	9.8e-19	57.14	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.2e-18	65.67	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..68 e-value: 1.3E-34 score: 118.2
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..70
None	No IPR available	PANTHER	PTHR33128:SF40	SUBFAMILY NOT NAMED	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002404.1	Sed0002404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane