Sed0002398 (gene) Chayote v1

Overview


Name	Sed0002398
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B
Location	LG02: 45156867 .. 45161483 (+)
RNA-Seq Expression	Sed0002398
Synteny	Sed0002398

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAAAGAAAAAAGAAAAAAGAAAAAATGAACGGTGGTGATAAAACTTGATTCTCTCATCTGAGTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATCCATTCCACCAGATCTAACGCCCTAATTTCAGTTTCTCCCACCAGGTAAATTCGATCCCATTTTTTTTTCAATTTCTATTTCAAATCTCTCAATTCCACTTCAAACCCACTACACCCTTTTCGTTTTTCTATGGATTTCCTCATTTTTTCCGCTCCAATTCTTCCATTTTTGGCTCTGGATTCTTCTCTGTTTATGGGTTTTGTCGCGTTTTTAGGGTTTTGGCGAAGAAGAAGTAGAAGATGGCTGATGCTCCGGCGAGCCCCGGCGGTGGAAGCCATGAAAGCGGCGACCATAGTCCGAGGTCGAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAACATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAACGGCAAGATTGCTAAGGACGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTGTCACTAGCGAGTACGACAGTGTGTTTGATTTTGTTTTGTTAATTGTTGTTTGTTTAGGCGTATTAAGTTTTTTATTTTTGAAATTTAAGCCCAGGAACAATTACTTGACTATGTGTTTTTTCTTATTTTTATAGATGTTTTTAATTTGGAAACAAAAAAGAATTAGCTTCGAGAAACTAAATTTTGTTTTAGTGTTTGAAATTTGATTAGCATTCAAGATGGAACTCATATAAGGAAATTTCAGTATAAATAAGCTTAAATTTCAAAAATTAAAAACCAAAAACATATGCTACGTTTGATAACTATTTTGTTTTTGGTTTATGAAATTTAAGCTTATTTCTACTCAAATTTCCTAATATGTGTTCCATCTTTTCTACTATGTATCTATATTTCCTTAAGAAAGTAGGTGACTACTAACCAAATTTTAAAAACAAAAACAAGCTTTTGGAAGCTACTTTTTTTTTGTTTCCGAATTTTGATTTTGTTTATTAAAATATAGTTAAGATGTAGATGTCCACATAAGGAAAAAAGTATAGTAAGGTAGTTGTTGTAGGCTTAAATTTCATAAACGAAAAACAAAAAACAAAATGGTTATCAAACGGGGACATAATGTTTATTGTTAGTAATTTTTCTTCTGAATTTGGGGATGTTTTTTGTGGTTGAATTTGTATTTATGTAGGGCCAGTGACAAATGCCAGAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCAATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACCAAATACAGAGAGGTATTTAATTGGCTAATGCTAATGTTTCCTGTTATTTTGATGATAAACTGTTGAAATTTTACAGTTTGCATATTGTTCATGATTCGTTTGAAATAGGGAGCTCTGCATCTATGTCTCAAATTTTGATTTCTTTGTTTGTTGTTTTGTTAGTTCTTATACTGTTCTTTGTGCTTATGAACTGATGGTTGGATGTTTTGTTTTTTGCCTTTTTTACCTGCTGGTTGCGACTTTGGGACGTTTTAGACTGAGGTAAGATTAGAGTTTTTTCCTTTACGTTTCTATGATTTGTCAATATCATGTATGAAATTAGGTGATATATATGTATATATTGTCTTTGTTGTGTGACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCATCTTCTAAGAAAGAAGCTCTTCCAACCCCTAGTGCTCAGGTCAATTATAAGAGTTGGTTTTTTTTCTTCTTCATTGAGCTGGATTTTTGGTGTTTTCCTCTGAACTTCTTTCTTTCTTAATTATGTAGATTGCTCTTCATCAAGGGTTTTCACAAGGAGTTAATTATGGAAATTCTCAAGTACTCTTTCTCGCTCTTTCTTTTTCTCTCACACTCAAGAAAACACCCATGCATGCACTTTTGTTGAAGATACCACATCAGAAAAATGCAGACCTCTAAGCATTTATAAGATTGTTGAGCTATTCCTCTCACTACTTCATTGGTTTTGAGATGGATTCGTATATTATCTAATTTGGTATCATGGTACATTAAATCTATGTGGGTATTCGGTCCAATAAAAATGAAATTATAGTGAAAAATACGCTTGTTTCTGATAAAATTCTCTTATAGGAGCCAATAAAAATGAAATTATTAGAATCCCAATTCCGATTCAAGATTAGTAAACCTCTAAAGGCACTATCTTGAGGAGGCATAAGATCCCACATTAAAATAGTGAGTAAATCTCCTAAAATTTATAAGATATAAGATATATGAGCTACTCTTCACCTTACTGGTGGGTTTTGAAATGGAAGAAGCAAAGAAGCAGTTCTGCTAGTGAACTAGGGTTACTTTAGTATGACTTCATTTGGATGGTGATAGTTATGTTTTAGTCAGGGGTGTTTGGGGGCAAGAGGATCAAATTGGTGAGATTGGAAGTATCTCCTTTACCTATGTTTGGGCCATCGGCAATCATTTTTCCCATAATCCTATTTATCGCCCTTATCTCCCTCATCATCACTATTCATTCTTTCCCTAATCACTTTTCATTTTTTCCATAACTAATATGCATTCCCTTATAAACATATTCATTCATATGGTTTCTCATAATCATTCTTGGCACCCCAGATAGGTAACAGTCCTTTCCCTCTTGCAATTAAACACAAGTAACGGTTCTCTTTAACCATTCCTTTCACCCAAACAAACACAGGTAATCATCCTTCATCCGGTTACAATTCCTTTTTGCAGTCTCGTTCCTCCTACAATCCTTTGATTCTCTGTGTTCCAACACCTCTTTAATGGGATACTTTTGTTGGGTAAGACGATGAGTTCTCGTTGAGAAAATAAAAAATCTTTTTTCCTAACTACAAGTCTACAATAAAGAACTTCAACAAAAAAGAACAAGATCGAACTCATAATTACTACAAGAAAAGGACTAGTGACCGGCGCCCACAAAAACTTACTTTGATCCCTTGAATATTCTGGATATACAATCAAAAGTTATTTTTAATAATTCTCAAGTTACTTAAAAACGTTCTAGAGGAAGCCTGAGAACTTGTCCATATAATTGTATAAGGATCTGTTTGTGAATTGTATCCATAGGACACTTCACATTGGATCTGTTTGCCAATTGTATCCATAGAACTCTGAACATTTGCTGGAGTTCATACTGTAGCAGGTTAGCAGCAACATAGTTATAGTGTGTAGAGAAGAAAAACATGTCAAGAATAAAGTATGCCAACAGCTATTCTATAGGACTTGCTGCCCCACACTCTTCTATACTAGATCTACTAGGCCTGTAGACTTCCAATTTTCTCTAAGAGTCGCAGTTTGGTCATTTATGGAGGGGTTTTGGTTTTTTTTCTTACCGTTTATTAACTTTGTATTGAAAACTAGTTTTGTTTCTAGTTCATACTTCATATCTTCGTGATTCTCTAGGCTCTTTCTTTCCTTGGTACATTTGGGGTTTATTTTAGAGCTCTCATATCATGTTTTCCACTTTAATATTGGCAACCAAATGTACTAGGGTATTGTAGTAGTCCCTATCGTGCGACATTAGTTAGAGGTGTGTTCAAGGTTGCATAGACATTTACGGATATTAAAAGTCTCAAATTTTTGTCCTATAAACACAATTGATAAACCTAAGAAGGGCATGAGTGCCCTTGGGTATGGAGGAGCGAAGCTCCGATTCTGGGTCATCAATTAGAATTTGGAACATACCAGTTACAAGTATGATGTTAATAATTTCGTTCTACCACGGGGTGACACAGTGGTTGAAGACTTGGACTTTGAGGGTATGCTCCCCCCAAGGTCCCAGATTCAAGACTTGCATGTATCTAGTCTAGGGATGGACGTGGTTACCCTTGTTTTAAAAAATAATTTCATTGTACCATTCACAATAGTTTCAAGTAGTGTCTTTAGAAGTATTTTTATTTAAAACACTTCCAAAGAAAAATTTACTTCTCTCTCCTTTAGGTTTAGTACCATTTTTACATTATTATTATTATTTTTTTCCAGTCACAAGGCCAGCATCTGATGGTTCCTATGCAAGGCACAGACTAAAATTGCCTCGAATTCGACCATTTAAACTATTGAATATGGAGATCTTTGTTCAGCATAACAGCAAAAATGTGAGTTTATTTATTTGTAGTTTGGGTGGCCTTGGTACTTCTATTTGTAGAAACAGTTGAAACCTTGTATATTATTATGGCTCTGTATTGGATTGGAGCTGGACATAGACTACATAGTAGTATTTAAGAGAGGTTCCAAGTCCTGGGGTATCCCATTTATTTGTGACTTGTAAACCTTACAGCATTGGCAAGGACTTGAAGATCTTGAAAAGACTGAGTAGCAGCAGCACCCATTTACCTTTTCTTCCTTTTTATTTTATTTTAAAAAAAAATAATCTTCCTGATCAAAACAATAAAATGTGTTTGTCATTGGATTTGCTTCTAGAAGTTCTTTAATCCTTCTTTGCTGTAGATGAAATGAATGGTATGAACTGTGAACTTCTGTATTCTTGTGTTGATCTTTAATGTCAGATGGAAAAGTAGTGTCCCTAC

mRNA sequence

TGAAAAAAGAAAAAAGAAAAAAGAAAAAATGAACGGTGGTGATAAAACTTGATTCTCTCATCTGAGTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATCCATTCCACCAGATCTAACGCCCTAATTTCAGTTTCTCCCACCAGGGTTTTGGCGAAGAAGAAGTAGAAGATGGCTGATGCTCCGGCGAGCCCCGGCGGTGGAAGCCATGAAAGCGGCGACCATAGTCCGAGGTCGAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAACATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAACGGCAAGATTGCTAAGGACGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTGTCACTAGCGAGGCCAGTGACAAATGCCAGAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCAATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACCAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCATCTTCTAAGAAAGAAGCTCTTCCAACCCCTAGTGCTCAGATTGCTCTTCATCAAGGGTTTTCACAAGGAGTTAATTATGGAAATTCTCAATCACAAGGCCAGCATCTGATGGTTCCTATGCAAGGCACAGACTAAAATTGCCTCGAATTCGACCATTTAAACTATTGAATATGGAGATCTTTGTTCAGCATAACAGCAAAAATGTGAGTTTATTTATTTGTAGTTTGGGTGGCCTTGGTACTTCTATTTGTAGAAACAGTTGAAACCTTGTATATTATTATGGCTCTGTATTGGATTGGAGCTGGACATAGACTACATAGTAGTATTTAAGAGAGGTTCCAAGTCCTGGGGTATCCCATTTATTTGTGACTTGTAAACCTTACAGCATTGGCAAGGACTTGAAGATCTTGAAAAGACTGAGTAGCAGCAGCACCCATTTACCTTTTCTTCCTTTTTATTTTATTTTAAAAAAAAATAATCTTCCTGATCAAAACAATAAAATGTGTTTGTCATTGGATTTGCTTCTAGAAGTTCTTTAATCCTTCTTTGCTGTAGATGAAATGAATGGTATGAACTGTGAACTTCTGTATTCTTGTGTTGATCTTTAATGTCAGATGGAAAAGTAGTGTCCCTAC

Coding sequence (CDS)

ATGGCTGATGCTCCGGCGAGCCCCGGCGGTGGAAGCCATGAAAGCGGCGACCATAGTCCGAGGTCGAATGTTCGTGAACAGGACAGGTTTCTTCCGATTGCGAACATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAACGGCAAGATTGCTAAGGACGCTAAGGAGACCGTACAGGAATGTGTGTCGGAGTTCATCAGTTTTGTCACTAGCGAGGCCAGTGACAAATGCCAGAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCAATGGCGACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACCAAATACAGAGAGACTGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATTCATCTTCTAAGAAAGAAGCTCTTCCAACCCCTAGTGCTCAGATTGCTCTTCATCAAGGGTTTTCACAAGGAGTTAATTATGGAAATTCTCAATCACAAGGCCAGCATCTGATGGTTCCTATGCAAGGCACAGACTAA

Protein sequence

MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD

Homology

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BLAST of Sed0002398 vs. NCBI nr
Match: XP_022948121.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_022948130.1 nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_023005187.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023005188.1 nuclear transcription factor Y subunit B-1-like [Cucurbita maxima] >XP_023540646.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo] >XP_023540647.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.5 bits (820), Expect = 9.1e-84
Identity = 163/174 (93.68%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+HSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD+S+KKEA PTP AQ+A HQG FSQGVNYG+SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDASAKKEAHPTPGAQVA-HQGTFSQGVNYGSSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. NCBI nr
Match: XP_004137802.1 (nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus] >XP_008442637.1 PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis melo] >KGN58930.1 hypothetical protein Csa_002371 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 4.2e-81
Identity = 157/173 (90.75%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+ SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD S+KKEA PTP  Q+A    FSQGVNY +SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. NCBI nr
Match: KAG6596449.1 (putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311.6 bits (797), Expect = 4.2e-81
Identity = 161/174 (92.53%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1    MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
            MADAPASPGGGSHESG+HSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 920  MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 979

Query: 61   CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
            CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR  EGDT
Sbjct: 980  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYR--EGDT 1039

Query: 121  KGSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
            KGSAKGGD+S+KKEA PTP AQ+A HQG FSQGVNYG+SQSQ QHLMVPMQGTD
Sbjct: 1040 KGSAKGGDASAKKEAHPTPGAQVA-HQGTFSQGVNYGSSQSQAQHLMVPMQGTD 1090

[Close]

BLAST of Sed0002398 vs. NCBI nr
Match: XP_038906090.1 (nuclear transcription factor Y subunit B-10-like isoform X1 [Benincasa hispida])

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80
Identity = 156/173 (90.17%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+ SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD+S+KKEA PT  +QIA    FSQGVNY +SQSQ QHLMVPMQGT+
Sbjct: 121 KGSAKGGDASAKKEAHPTSISQIAHQGSFSQGVNYASSQSQAQHLMVPMQGTE 173

[Close]

BLAST of Sed0002398 vs. NCBI nr
Match: QBG64243.1 (nuclear transcription factor Y subunit beta10 [Dimocarpus longan])

HSP 1 Score: 304.3 bits (778), Expect = 6.7e-79
Identity = 152/173 (87.86%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 2   ADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61
           A+APASPGGGSHESGD SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQEC
Sbjct: 3   AEAPASPGGGSHESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62

Query: 62  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTK 121
           VSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YRE EGDTK
Sbjct: 63  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 122

Query: 122 GSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           GSAKGGDSS+KK+  P+P++Q   HQG FSQGVNYGNSQSQ QH+MVPMQGT+
Sbjct: 123 GSAKGGDSSAKKDVQPSPNSQQLTHQGSFSQGVNYGNSQSQAQHMMVPMQGTE 175

[Close]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot
Match: Q8VYK4 (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.2e-63
Identity = 135/179 (75.42%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES GD SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 120
            VQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 121 EGDTKGSAKGGDSSSKKEALPTPSAQIA--LHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           EGDTKGSAKGGD ++KK+   + + Q +   HQG      YGNSQ+Q QH+MVPM GTD
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQG-----PYGNSQAQ-QHMMVPMPGTD 173

[Close]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot
Match: Q67XJ2 (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.0e-61
Identity = 131/170 (77.06%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 9   GGGSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 68
           GGGSHES GD SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 69  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKG 128
           SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE EGDTKGS KG
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKG 129

Query: 129 GDSSSKKEALPTPSAQIAL--HQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           G+SS+K++  P+  +Q +    QG FSQG  YGN  SQG ++MV M GT+
Sbjct: 130 GESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYGN--SQGSNMMVQMPGTE 176

[Close]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot
Match: P25209 (Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.4e-57
Identity = 125/175 (71.43%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 1   MADAPASP--GGGSHESGDHSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKD 60
           MA+APASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKD
Sbjct: 1   MAEAPASPGGGGGSHESG--SPRGGGGGGSVREQDRFLPIANISRIMKKAIPANGKIAKD 60

Query: 61  AKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKY 120
           AKETVQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PLK YL KY
Sbjct: 61  AKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKY 120

Query: 121 RETEGDTKGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVP 169
           RE EGD+K +AK  D S KK+AL    A  +  +G  Q   Y    +QG   M P
Sbjct: 121 REMEGDSKLTAKSSDGSIKKDALGHVGASSSAAEGMGQQGAY----NQGMGYMQP 169

[Close]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-56
Identity = 124/182 (68.13%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 1   MADAPASP--GGGSHESGDHSPR------------SNVREQDRFLPIANISRIMKKALPA 60
           MAD P SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PA
Sbjct: 1   MADGPGSPGGGGGSHESG--SPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPA 60

Query: 61  NGKIAKDAKETVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 120
           NGKIAKDAKETVQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYI+PL
Sbjct: 61  NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL 120

Query: 121 KTYLTKYRETEGDTKGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLM 169
           K YL KYRE EGD+K +AK GD S KK+ L +     +  QG  Q   Y    +QG   M
Sbjct: 121 KVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSSSSAQGMGQQAAY----NQGMGYM 176

[Close]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-51
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE EGD 
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN 120

Query: 121 KGSAKGGDSSSK 133
           KGS K GD S++
Sbjct: 121 KGSGKSGDGSNR 127

[Close]

BLAST of Sed0002398 vs. ExPASy TrEMBL
Match: A0A6J1KSG0 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498291 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 163/174 (93.68%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+HSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD+S+KKEA PTP AQ+A HQG FSQGVNYG+SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDASAKKEAHPTPGAQVA-HQGTFSQGVNYGSSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. ExPASy TrEMBL
Match: A0A6J1G8V7 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111451794 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 163/174 (93.68%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+HSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD+S+KKEA PTP AQ+A HQG FSQGVNYG+SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDASAKKEAHPTPGAQVA-HQGTFSQGVNYGSSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. ExPASy TrEMBL
Match: A0A0A0LAB9 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736780 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 157/173 (90.75%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+ SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD S+KKEA PTP  Q+A    FSQGVNY +SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. ExPASy TrEMBL
Match: A0A1S3B5N5 (nuclear transcription factor Y subunit B-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486448 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.0e-81
Identity = 157/173 (90.75%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MADAPASPGGGSHESG+ SPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE
Sbjct: 1   MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT
Sbjct: 61  CVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120

Query: 121 KGSAKGGDSSSKKEALPTPSAQIALHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           KGSAKGGD S+KKEA PTP  Q+A    FSQGVNY +SQSQ QHLMVPMQGTD
Sbjct: 121 KGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQSQAQHLMVPMQGTD 173

[Close]

BLAST of Sed0002398 vs. ExPASy TrEMBL
Match: A0A411PZE5 (Nuclear transcription factor Y subunit beta10 OS=Dimocarpus longan OX=128017 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-79
Identity = 152/173 (87.86%), Postives = 163/173 (94.22%), Query Frame = 0


Query: 2   ADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQEC 61
           A+APASPGGGSHESGD SPRSNVREQDR+LPIANISRIMKKALPANGKIAKDAKETVQEC
Sbjct: 3   AEAPASPGGGSHESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62

Query: 62  VSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTK 121
           VSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YLT+YRE EGDTK
Sbjct: 63  VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 122

Query: 122 GSAKGGDSSSKKEALPTPSAQIALHQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           GSAKGGDSS+KK+  P+P++Q   HQG FSQGVNYGNSQSQ QH+MVPMQGT+
Sbjct: 123 GSAKGGDSSAKKDVQPSPNSQQLTHQGSFSQGVNYGNSQSQAQHMMVPMQGTE 175

[Close]

BLAST of Sed0002398 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 241.1 bits (614), Expect = 6.5e-64
Identity = 135/179 (75.42%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES GD SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 120
            VQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 121 EGDTKGSAKGGDSSSKKEALPTPSAQIA--LHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           EGDTKGSAKGGD ++KK+   + + Q +   HQG      YGNSQ+Q QH+MVPM GTD
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQG-----PYGNSQAQ-QHMMVPMPGTD 173

[Close]

BLAST of Sed0002398 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 241.1 bits (614), Expect = 6.5e-64
Identity = 135/179 (75.42%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES GD SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 120
            VQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 121 EGDTKGSAKGGDSSSKKEALPTPSAQIA--LHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           EGDTKGSAKGGD ++KK+   + + Q +   HQG      YGNSQ+Q QH+MVPM GTD
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQG-----PYGNSQAQ-QHMMVPMPGTD 173

[Close]

BLAST of Sed0002398 vs. TAIR 10
Match: AT2G37060.3 (nuclear factor Y, subunit B8 )

HSP 1 Score: 241.1 bits (614), Expect = 6.5e-64
Identity = 135/179 (75.42%), Postives = 150/179 (83.80%), Query Frame = 0


Query: 1   MADAPA-SPGG-GSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKE 60
           MA++ A SPGG GSHES GD SPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1   MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60

Query: 61  TVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRET 120
            VQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK YL +YRE 
Sbjct: 61  IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120

Query: 121 EGDTKGSAKGGDSSSKKEALPTPSAQIA--LHQGFSQGVNYGNSQSQGQHLMVPMQGTD 174
           EGDTKGSAKGGD ++KK+   + + Q +   HQG      YGNSQ+Q QH+MVPM GTD
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQG-----PYGNSQAQ-QHMMVPMPGTD 173

[Close]

BLAST of Sed0002398 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 237.7 bits (605), Expect = 7.2e-63
Identity = 131/170 (77.06%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 9   GGGSHES-GDHSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFI 68
           GGGSHES GD SPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFI
Sbjct: 10  GGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFI 69

Query: 69  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKG 128
           SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK YL +YRE EGDTKGS KG
Sbjct: 70  SFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKG 129

Query: 129 GDSSSKKEALPTPSAQIAL--HQG-FSQGVNYGNSQSQGQHLMVPMQGTD 174
           G+SS+K++  P+  +Q +    QG FSQG  YGN  SQG ++MV M GT+
Sbjct: 130 GESSAKRDGQPSQVSQFSQVPQQGSFSQG-PYGN--SQGSNMMVQMPGTE 176

[Close]

BLAST of Sed0002398 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 202.2 bits (513), Expect = 3.4e-52
Identity = 100/132 (75.76%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MADAPASPGGGSHESGDHSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQE 60
           MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQE
Sbjct: 1   MADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQE 60

Query: 61  CVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDT 120
           CVSEFISF+TSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLK YL +YRE EGD 
Sbjct: 61  CVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDN 120

Query: 121 KGSAKGGDSSSK 133
           KGS K GD S++
Sbjct: 121 KGSGKSGDGSNR 127

The following BLAST results are available for this feature:

BLAST of Sed0002398 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948121.1	9.1e-84	93.68	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata] >XP_0229481...	[more]
XP_004137802.1	4.2e-81	90.75	nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus] >XP_0084...	[more]
KAG6596449.1	4.2e-81	92.53	putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita a...	[more]
XP_038906090.1	2.1e-80	90.17	nuclear transcription factor Y subunit B-10-like isoform X1 [Benincasa hispida]	[more]
QBG64243.1	6.7e-79	87.86	nuclear transcription factor Y subunit beta10 [Dimocarpus longan]	[more]

BLAST of Sed0002398 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYK4	9.2e-63	75.42	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q67XJ2	1.0e-61	77.06	Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
P25209	4.4e-57	71.43	Nuclear transcription factor Y subunit B OS=Zea mays OX=4577 GN=NFY2 PE=2 SV=1	[more]
Q60EQ4	2.2e-56	68.13	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9SLG0	4.7e-51	75.76	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Sed0002398 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSG0	4.4e-84	93.68	nuclear transcription factor Y subunit B-1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G8V7	4.4e-84	93.68	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LAB9	2.0e-81	90.75	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7367...	[more]
A0A1S3B5N5	2.0e-81	90.75	nuclear transcription factor Y subunit B-1 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A411PZE5	3.3e-79	87.86	Nuclear transcription factor Y subunit beta10 OS=Dimocarpus longan OX=128017 PE=...	[more]

BLAST of Sed0002398 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37060.1	6.5e-64	75.42	nuclear factor Y, subunit B8	[more]
AT2G37060.2	6.5e-64	75.42	nuclear factor Y, subunit B8	[more]
AT2G37060.3	6.5e-64	75.42	nuclear factor Y, subunit B8	[more]
AT3G53340.1	7.2e-63	77.06	nuclear factor Y, subunit B10	[more]
AT2G38880.2	3.4e-52	75.76	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 77..95 score: 39.35 coord: 96..114 score: 40.31 coord: 58..76 score: 55.86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11064:SF134	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED	coord: 1..160
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 30..94 e-value: 1.0E-27 score: 96.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 16..148 e-value: 1.1E-47 score: 163.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 27..132
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..160
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 61..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002398.1	Sed0002398.1	mRNA
Sed0002398.2	Sed0002398.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding