Sed0002385 (gene) Chayote v1

Overview


Name	Sed0002385
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L39
Location	LG13: 24739357 .. 24739924 (+)
RNA-Seq Expression	Sed0002385
Synteny	Sed0002385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAAGAGTTTAAAAGTTGGGCTCAAATGAAGGCCCATTTACGAGGTTAAAGAATAGGCGAGCTGCCCGCGGGCAGATCTCGATTGCCCTTTTGAGTGGAGCATATAAAATCTCTTCACTACCGATTAGGGTTTTCGTTGCACCGCCGCCATCTTCCTAAGTGCGCCGCCGATCACCGGAAACTCGAAAATGGTACTTATTGCTATTTGATTCTCTGAACATTTCCCCCCTTAACGTTATGCGATTATTCGTTCTTCATTTGAAGATTGAAACTGTGCGAATTTGTGATTCGATTTTCTCTTCTCTTCCAAATCGCAGCCGTCACACAAGACTTTCAGAATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGACTCAGAACCGATAATACTATCAGGTATTAAGCCTCCGCCATTGGAATCGCCGTTCTTTCAAGCCTATGCTTCAATTTGGAGTCTTACAATTTGGCGATTTTTTTTTTTTTTTGCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTAA

mRNA sequence

ATGGGCCAAGAGTTTAAAAGTTGGGGTTTTCGTTGCACCGCCGCCATCTTCCTAAGTGCGCCGCCGATCACCGGAAACTCGAAAATGCCGTCACACAAGACTTTCAGAATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGACTCAGAACCGATAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTAA

Coding sequence (CDS)

ATGGGCCAAGAGTTTAAAAGTTGGGGTTTTCGTTGCACCGCCGCCATCTTCCTAAGTGCGCCGCCGATCACCGGAAACTCGAAAATGCCGTCACACAAGACTTTCAGAATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCAATCCCGCACTGGATCCGACTCAGAACCGATAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTAA

Protein sequence

MGQEFKSWGFRCTAAIFLSAPPITGNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of Sed0002385 vs. NCBI nr
Match: KAG6585491.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 9  GFRCTAAIFLSAPPITGNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 68
          GF        ++ P++  SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK
Sbjct: 13 GFLLVVRCPKTSQPVSRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 72

Query: 69 RRHWRRTKLGF 80
          RRHWRRTKLGF
Sbjct: 73 RRHWRRTKLGF 83

[Close]

BLAST of Sed0002385 vs. NCBI nr
Match: KAG7024434.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 26 NSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          NSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 34 NSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87

[Close]

BLAST of Sed0002385 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 5.9e-22
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 11  RCTAAIFLSAPPITGN--SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 70
           R + + FL      G+  SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK
Sbjct: 60  RVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 119

Query: 71  RRHWRRTKLGF 80
           RRHWRRTKLGF
Sbjct: 120 RRHWRRTKLGF 130

[Close]

BLAST of Sed0002385 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 5.9e-22
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 11  RCTAAIFLSAPPITGN--SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 70
           R + + FL      G+  SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK
Sbjct: 49  RVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 108

Query: 71  RRHWRRTKLGF 80
           RRHWRRTKLGF
Sbjct: 109 RRHWRRTKLGF 119

[Close]

BLAST of Sed0002385 vs. NCBI nr
Match: KAG7942640.1 (hypothetical protein I3843_16G114100 [Carya illinoinensis])

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 9   GFRCTAAIFLSAPPITGNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 68
           GF  +A  F   PP    +KMPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAK
Sbjct: 66  GFPSSAFSFRPRPPA---AKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAK 125

Query: 69  RRHWRRTKLGF 80
           RRHWRRTKLGF
Sbjct: 126 RRHWRRTKLGF 133

[Close]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-22
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. ExPASy TrEMBL
Match: A0A0A0LM35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-23
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 6  KSWGFRCTAAIFLSAPPITGN-SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR 65
          +S GFR   ++F++        SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Sbjct: 4  ESTGFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR 63

Query: 66 YNAKRRHWRRTKLGF 80
          YNAKRRHWRRTKLGF
Sbjct: 64 YNAKRRHWRRTKLGF 78

[Close]

BLAST of Sed0002385 vs. ExPASy TrEMBL
Match: A0A6J1HDM7 (uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC111462968 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-22
Identity = 57/71 (80.28%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 11  RCTAAIFLSAPPITGN--SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 70
           R + + FL      G+  SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK
Sbjct: 60  RVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAK 119

Query: 71  RRHWRRTKLGF 80
           RRHWRRTKLGF
Sbjct: 120 RRHWRRTKLGF 130

[Close]

BLAST of Sed0002385 vs. ExPASy TrEMBL
Match: A0A059D7Q1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03153 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-22
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 5  FKSWGFRCTAAIFLSAPPITGNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR 64
          F S G   T +   S    + ++KMPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIR
Sbjct: 19 FLSLGISGTPSQLGSPRVRSPSAKMPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIR 78

Query: 65 YNAKRRHWRRTKLGF 80
          YNAKRRHWRRTKLGF
Sbjct: 79 YNAKRRHWRRTKLGF 93

[Close]

BLAST of Sed0002385 vs. ExPASy TrEMBL
Match: A0A3L6RVG2 (60S ribosomal protein L39 OS=Panicum miliaceum OX=4540 GN=C2845_PM11G23010 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 5   FKSWGF-RCTAAIFLSAPPITGNSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI 64
           F   GF RC    F+SA      ++MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTI
Sbjct: 87  FTQLGFSRCRRRFFVSA------ARMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 146

Query: 65  RYNAKRRHWRRTKLGF 80
           RYNAKRRHWRRTKLGF
Sbjct: 147 RYNAKRRHWRRTKLGF 156

[Close]

BLAST of Sed0002385 vs. ExPASy TrEMBL
Match: A0A2P5ANB0 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 27 SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 19 AKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]

BLAST of Sed0002385 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 103.6 bits (257), Expect = 7.4e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 29 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of Sed0002385 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 37 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 80
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of Sed0002385 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6585491.1	1.2e-22	78.87	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
KAG7024434.1	3.5e-22	100.00	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022962571.1	5.9e-22	80.28	uncharacterized protein LOC111462968 [Cucurbita moschata]	[more]
KAG7029487.1	5.9e-22	80.28	60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7942640.1	1.0e-21	78.87	hypothetical protein I3843_16G114100 [Carya illinoinensis]	[more]

BLAST of Sed0002385 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6KAJ8	2.1e-22	96.08	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	2.1e-22	96.08	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
P51425	2.1e-22	96.08	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
Q5SMI4	6.1e-22	94.12	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51424	1.0e-21	94.12	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of Sed0002385 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM35	7.5e-23	77.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382530 PE=3 SV=1	[more]
A0A6J1HDM7	2.9e-22	80.28	uncharacterized protein LOC111462968 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A059D7Q1	8.3e-22	74.67	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03153 PE=3 SV...	[more]
A0A3L6RVG2	1.1e-21	75.00	60S ribosomal protein L39 OS=Panicum miliaceum OX=4540 GN=C2845_PM11G23010 PE=3 ...	[more]
A0A2P5ANB0	1.8e-21	98.11	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_315710 PE=3 SV=...	[more]

BLAST of Sed0002385 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	7.4e-23	94.12	Ribosomal protein L39 family protein	[more]
AT3G02190.1	2.4e-21	90.20	Ribosomal protein L39 family protein	[more]
AT2G25210.1	6.5e-19	97.67	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 37..77 e-value: 6.7E-22 score: 76.9
IPR000077	Ribosomal protein L39e	HAMAP	MF_00629	Ribosomal_L39e	coord: 29..79 score: 12.866076
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 29..79 e-value: 1.7E-29 score: 103.5
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 31..78
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 17..79
None	No IPR available	PANTHER	PTHR19970:SF31	SUBFAMILY NOT NAMED	coord: 17..79
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002385.1	Sed0002385.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome