Sed0002362 (gene) Chayote v1

Overview


Name	Sed0002362
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription initiation factor TFIID subunit 9
Location	LG09: 39998207 .. 40001737 (-)
RNA-Seq Expression	Sed0002362
Synteny	Sed0002362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACGATTTTGTAGTTCGAGTTCTTGAAACGATGAGTCGTGGAAGTGGAGCTGGATTTGACAATCAAAACACCAATTTCTCGCCCGAACCTCGACCTTCACAAGCAGGTATGTCACAGTTTGTTTTCGATTCTTTGAATTACTACTTAATTTTCATGTTTTGATCCAATTTTTATGGGTATTTTGAGGTTTTAGGGCAACTGATTTTAGTTTTTCAAGCTCTAATTGCTCGTAGATCGGAGGGAAGATGTTATTTGGGGGGATTATTTGTTCTTGCATCATCGAATTTCTGAATTATCGCTCTTAGAACCAAATAGCACCGTGCAAGTTTGAATTTTCGTTTTCTTGCACTTCTGGAAGATTTGAAGTTTGGGGGAATCGGGAAGGGGAAGTCGGTAATTGTGCAAATTTAAACGTTGAATTTTGAGTTTGAGATGGCAATTTGTTTTTGTTCTCTGTTTATTTTCAAACTTGAAGATGATCTGATTCTTTTTGTCCTGGAGTTGCCATCTACATCTTACTTGTTTCAATAACAACGTTGTCAATGAAAGATGTTGAATTCGTCTCTTACAGTTATGCTGTATCTTAAACTTCAAGATCGTTTTTGGTTTTGCTTGGAAATTCAAATATGCAACTTTTTTTTTTAAAAAGACATGTTGTAATTAGTTGAACAACAGTCTCCAAGGGGTGGCGCAGTGGTTGAAGATTTGGGCTTTGAGGGTATGCTCCCCTCAAGGTCCCGGGTTCGAGATTCACCTGTGACACTACTCTTTGATGTCTCCGGTGCCTAGCCTAGGGACGGGTGTGGTTTACCTTGTTTAAAAAAAAAGTAATTAGTTGAAAAATATTCCGGTACCTGGCTTAGGGACGGACGTGGTTACCCTTTTTCAATAAAAATTAGTTGAACAATACTTAGATTGACTTTATAATTGAGATTGAGAGTAAATCATATTCAATCACTGAATTATTGTTTTATCCGTGAGTGTTCGGGACCAATTTACACCCACCTCGACTGTACTCACGGGACAACCCGTCTAATCCTACAACATTTTGTAGTCAAGAAAACCCGTTGGAAATTAATGGCTAGGTAGGTGATCATCATGGATTACTCATTACCTTTTAGATCTCCAAAACCGTCTTTGATGGACAACCACTGAATTTTTATATCTAGTTTACTTTGGTTCATAAATGATCAAATATTTATTTTGCCTACAATGATTTGGTACACAGTTTATATAAAAGAGCAAAGCAGAAGTACAGAACATCTAGTCTGCGAACCTATAATATTTTACTTAATACTTATCAAACTTGCAACGTAAAACAAGCTTTTGGTGGAATATCAGTAAAGAAAATTACAAAAATAATGCAAATTTCTTGTCCAGGGGAAAGGGGCAGTAAGGAAATAACTGAGGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCTCGAGTTATACACCAGTTTCTTGAGCTGTGGTATAGTTATGTTGTTGACGTTCTAACGGATGCGCAAGTTTACTCGGAGCATGCAGCCAAGGCTGCTATTGACTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTCAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACATGGCTTCATAGTCCCAACTAAATGTTGTTCATTTGTATACTAGAGTCTTTTGGACAATTGCGCTCTGAATAGGACTTACTGATAGAATCATTTGAGTAAATATGGCAATCATTGATCTACGTTAAGTTACTTTTCTTTATATCAATAAGTGTCCAGTCATTTTACGTGTACTTTGACTATTTTCATGGGATATACAATCTGACCCTACAACATTTAAAAATATGAGAGATTTAGATATTTGTAGGAAATTATTTTCTTTTTTTTTTGGATAAGAAACAATTTCATATGTATGAAATTATAGAATTACAAAATAAGGACAATCCATCTATAATAGGGATCTCCAACTATTAACAAGGGAACCGAAGCTGTAATCATGAAAAAGCGGAGAAAGTTTACACCATGATACCACCATATATGTGATATTATCAATGAAGCGCTCAAAAGGTGTAACTAAATCTTTGAAAATTCTACGATTCCTTTCTAACCAGATGCTCCAACATAAATCTTTTATAAAATTTTCCCACAAAATTTTCTTCTTCTTCCCTTTAAAAGGATGGTCCGTCAAGGCAATATTCAATAGTGAATAAGGGTCCTTAGGAAGAGTCAAATTATTTTCTAGGTAGGTAATCACTAGACCCTCTTTAACTATTAGGCCAATCTATGATGTATCCATAATATATTACTGCAATGATAAAAGTATAACGAAATCATCATCTTGTTAGCTAGAAATATTTATTGCGCATGTGAAAGCACATGTAAACTAAAGAGGCTTTGATGGATAGATATGTATGGTATCTTTTAGAGAGATATCCTATTCATGGATTTCCCTTACCATCTTCTCTCCTATTAGATAGAGTGTTTAACCATGTGTTTCTTTTTTGTCAGGATCTTCTAGAGTTGGCTTCTAGATCCAACCAACTAGATGTGGTTCATTTGTAGAGTACATATTTTTGGACAATTGAGCTCTGAATAGGATATGGCAATAATTGATCTATGGCATTTTTTTATCCATAAGTGTCTAGGATAACTTAGGTGCATTTCAACTATTATCACAAAAAACACCATCTTAATCGAACATTTAGATGTTGAGGAAACTCGTAGGAAATTATTTTCTAAATAGGTGATTACTATAGATTAAATTCATAAACTTCTTGAATTTTCAAGATCCTCTTTGACTATTAGATCGACCCAAGATTAATCACGGTAGCGATAGAAGTAGAACGAAATCACCATCTTGTGCATGTGAAAGCACGTGTAATTTAAAGAAACTTAGTTGGGGAGATACTTATGGTATTTTATAGATAGATAGATGATCCTATTCATGGATTTCCCTTGCTATTTTTTCTCCTATTAGAGAGTGTTAACCATGTGTTTCCTTTTTGTCAGGATCTTCTAGAGTTGGCCAGAAACAGGAATAAAATTCCATTGCCGAGGTCGATTGGCCAACCTGGCATCGCCCTTCCACTCGATCAAGACACGTTGCTCAGTCCCAACTATCAACTGGCTATCCCAAGGAAGCAACCTGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGTCGACCCGGTTCCATCCCAAGAACCCAGCACAGAACTACCTCAACATACTCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAACTAACATAGTTGTTTATTTCTACTTTGTTTCAAACTTTCCTCTCCCAATTAAAAAAAAAAGTGCTTTAAAACTTCATTTACATTCATTTGAAGTTGGGGGAAGTGTTGTTGGATATTGCCATCTGAACATAGTAATGATTAATGAACCAGATCTATTGTATAATACAAGCATTGTTGCTATATCCTCGGGGGTGTGTTTTTTTTTATTCAGTGGAG

mRNA sequence

GAACGATTTTGTAGTTCGAGTTCTTGAAACGATGAGTCGTGGAAGTGGAGCTGGATTTGACAATCAAAACACCAATTTCTCGCCCGAACCTCGACCTTCACAAGCAGGGGAAAGGGGCAGTAAGGAAATAACTGAGGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCTCGAGTTATACACCAGTTTCTTGAGCTGTGGTATAGTTATGTTGTTGACGTTCTAACGGATGCGCAAGTTTACTCGGAGCATGCAGCCAAGGCTGCTATTGACTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTCAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGATCTTCTAGAGTTGGCCAGAAACAGGAATAAAATTCCATTGCCGAGGTCGATTGGCCAACCTGGCATCGCCCTTCCACTCGATCAAGACACGTTGCTCAGTCCCAACTATCAACTGGCTATCCCAAGGAAGCAACCTGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGTCGACCCGGTTCCATCCCAAGAACCCAGCACAGAACTACCTCAACATACTCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAACTAACATAGTTGTTTATTTCTACTTTGTTTCAAACTTTCCTCTCCCAATTAAAAAAAAAAGTGCTTTAAAACTTCATTTACATTCATTTGAAGTTGGGGGAAGTGTTGTTGGATATTGCCATCTGAACATAGTAATGATTAATGAACCAGATCTATTGTATAATACAAGCATTGTTGCTATATCCTCGGGGGTGTGTTTTTTTTTATTCAGTGGAG

Coding sequence (CDS)

ATGAGTCGTGGAAGTGGAGCTGGATTTGACAATCAAAACACCAATTTCTCGCCCGAACCTCGACCTTCACAAGCAGGGGAAAGGGGCAGTAAGGAAATAACTGAGGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAAACACTTCTGAAATCAATGGGAGTTGAAGATTATGAACCTCGAGTTATACACCAGTTTCTTGAGCTGTGGTATAGTTATGTTGTTGACGTTCTAACGGATGCGCAAGTTTACTCGGAGCATGCAGCCAAGGCTGCTATTGACTGTGATGATGTGAAGCTTGCTATCCAGTCCAAAGTCAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGATCTTCTAGAGTTGGCCAGAAACAGGAATAAAATTCCATTGCCGAGGTCGATTGGCCAACCTGGCATCGCCCTTCCACTCGATCAAGACACGTTGCTCAGTCCCAACTATCAACTGGCTATCCCAAGGAAGCAACCTGTCGAAACCATGGAGGAAACAGAGGAGGATGAAGGCGTCGACCCGGTTCCATCCCAAGAACCCAGCACAGAACTACCTCAACATACTCCACAGAGAGTATCTTTCCCCTTGGCAAAACGTCCAAAACTAACATAG

Protein sequence

MSRGSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPVPSQEPSTELPQHTPQRVSFPLAKRPKLT

Homology

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BLAST of Sed0002362 vs. NCBI nr
Match: XP_022144675.1 (transcription initiation factor TFIID subunit 9 [Momordica charantia])

HSP 1 Score: 360.9 bits (925), Expect = 7.3e-96
Identity = 182/208 (87.50%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MSRGSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYE 60
           MSRG+G G+DNQNTNFSPE RPSQ GERGSKE+TEG+EDLPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 61  PRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDL 120
           PRVIHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE L
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 121 LELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPV 180
           LELARNRNKIPLPR+IG PGIALP D D L+SPNYQLAIP+KQPVETMEETEE+E VD  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 181 PSQEPSTELPQHTPQRVSFPLAKRPKLT 209
            SQEPSTE+PQHTPQRVSFPLAKRPK+T
Sbjct: 181 SSQEPSTEVPQHTPQRVSFPLAKRPKIT 208

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BLAST of Sed0002362 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 357.8 bits (917), Expect = 6.2e-95
Identity = 183/206 (88.83%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 4   GSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G G G+DNQNTNFSPE RPSQ G+RG KE++EG+EDLPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 64  IHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLEL 123
           IHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE LLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 124 ARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPVPSQ 183
           ARNRNKIPLPRSIG PGIALP DQDTLLSPNYQLAIPRK+ VE MEETEEDEGVD VPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 184 EPSTELP-QHTPQRVSFPLAKRPKLT 209
           EPSTE+P QHTPQRVSFPL+KRPK+T
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

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BLAST of Sed0002362 vs. NCBI nr
Match: KAG7013987.1 (Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 2.3e-94
Identity = 186/211 (88.15%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MSRGS--GAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVED 60
           MSRGS  G G+DNQNTNFSPE RPSQ G+RG KE++EG+EDLPRDAKIVKTLLKSMGVED
Sbjct: 1   MSRGSGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVED 60

Query: 61  YEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120
           YEPRVIHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE
Sbjct: 61  YEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPRE 120

Query: 121 DLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVD 180
            LLELARNRNKIPLPRSIG PGIALP DQDTLLSPNYQLAIPRK+ VE MEETEEDEGVD
Sbjct: 121 VLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVD 180

Query: 181 PVPSQEPSTELP-QHTPQRVSFPLAKRPKLT 209
            VPSQE STE+P QHTPQRVSFPL+KRPK+T
Sbjct: 181 AVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 211

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BLAST of Sed0002362 vs. NCBI nr
Match: KAG6575445.1 (Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.4 bits (908), Expect = 6.8e-94
Identity = 186/215 (86.51%), Postives = 195/215 (90.70%), Query Frame = 0


Query: 1   MSRGS------GAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSM 60
           MSRGS      G G+DNQNTNFSPE RPSQ G+RG KE++EG+EDLPRDAKIVKTLLKSM
Sbjct: 1   MSRGSGGGGGGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSM 60

Query: 61  GVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQP 120
           GVEDYEPRVIHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQP
Sbjct: 61  GVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQP 120

Query: 121 PPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEED 180
           PPRE LLELARNRNKIPLPRSIG PGIALP DQDTLLSPNYQLAIPRK+ VE MEETEED
Sbjct: 121 PPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEED 180

Query: 181 EGVDPVPSQEPSTELP-QHTPQRVSFPLAKRPKLT 209
           EGVD VPSQE STE+P QHTPQRVSFPL+KRPK+T
Sbjct: 181 EGVDAVPSQELSTEVPQQHTPQRVSFPLSKRPKIT 215

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BLAST of Sed0002362 vs. NCBI nr
Match: XP_022992393.1 (transcription initiation factor TFIID subunit 9 [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 3.7e-92
Identity = 179/206 (86.89%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 4   GSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G G G+DNQNTNFSPE R SQ G+RG KE++EG+EDLPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 64  IHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLEL 123
           IHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE LLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 124 ARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPVPSQ 183
           ARNRNKIPLPRSIG PGIALP D DTLLSPNYQLAIP+K+PVE MEETEEDEGVD VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 184 EPSTELP-QHTPQRVSFPLAKRPKLT 209
           E STE+P QHTPQRVSFPL+KRPK+T
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

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BLAST of Sed0002362 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.7e-66
Identity = 133/180 (73.89%), Postives = 150/180 (83.33%), Query Frame = 0


Query: 35  EGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAI 94
           EGEED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWY YVV+VLTDAQVYSEHA+K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 95  DCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPN 154
           DCDDVKLAIQSKVNFSFSQPPPRE LLELA +RNKIPLP+SI  PG+ LP +QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 155 YQLAIPRKQPVETMEETEEDEGV-DPVPS-------QEPSTELPQHTPQRVSFPLAKRPK 207
           YQL IP+K      EETE+DE + DP  S       Q+ +++LP  TPQRVSFPL++RPK
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRRPK 183

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BLAST of Sed0002362 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-28
Identity = 70/162 (43.21%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 38  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCD 97
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  + YV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 98  DVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQL 157
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LP D+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 158 -AIPRKQPVETMEETEEDEGVDPVPSQEPSTELPQHTPQRVS 199
            ++ +K P      T     V  V S+  +  L   TPQ +S
Sbjct: 130 KSLQKKAPAPAGRITVPRLSVGSVSSRPSTPTLGTPTPQTMS 171

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BLAST of Sed0002362 vs. ExPASy Swiss-Prot
Match: Q16594 (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28
Identity = 70/166 (42.17%), Postives = 102/166 (61.45%), Query Frame = 0


Query: 34  TEGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAA 93
           T   + +P+DA+++  +LK MG+ +YEPRVI+Q LE  + YV  +L DA++YS HA KA 
Sbjct: 6   TASPKSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKAT 65

Query: 94  IDCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSP 153
           +D DDV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LP D+  L +P
Sbjct: 66  VDADDVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAP 125

Query: 154 NYQL-AIPRKQPVETMEETEEDEGVDPVPSQEPSTELPQHTPQRVS 199
           NY+L ++ +K        T     V  V S+  +  L   TPQ +S
Sbjct: 126 NYRLKSLQKKASTSAGRITVPRLSVGSVTSRPSTPTLGTPTPQTMS 171

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BLAST of Sed0002362 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 38  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCD 97
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  + YV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 98  DVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQL 157
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LP D+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 158 -AIPRKQPVETMEETEEDEGVDPVPSQEPSTELPQHTPQRVS 199
            ++ +K P      T     V  V S+  +  L   TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVPRLSVGSVSSRPSTPTLGTPTPQAMS 171

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BLAST of Sed0002362 vs. ExPASy Swiss-Prot
Match: Q6NZA9 (Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf9b PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-27
Identity = 60/128 (46.88%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 38  EDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCD 97
           ++ PRDA ++  +LK MG+ +YEPRVI+Q LE  + YV  +L DA++YS HA K  +D D
Sbjct: 10  KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 98  DVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQL 157
           DV+LAIQ + + SF+ PPPR+ LL++AR +N+ PLP      G  LP D+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

Query: 158 -AIPRKQP 165
            ++ +K P
Sbjct: 130 KSLVKKGP 137

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BLAST of Sed0002362 vs. ExPASy TrEMBL
Match: A0A6J1CSB1 (transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 GN=LOC111014303 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.5e-96
Identity = 182/208 (87.50%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MSRGSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYE 60
           MSRG+G G+DNQNTNFSPE RPSQ GERGSKE+TEG+EDLPRDA+IVK LLKSMGVEDYE
Sbjct: 1   MSRGTGGGYDNQNTNFSPEARPSQLGERGSKEVTEGDEDLPRDARIVKALLKSMGVEDYE 60

Query: 61  PRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDL 120
           PRVIHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE L
Sbjct: 61  PRVIHQFLELWYRYVVDVLTDAQVYSEHACKAAIDCDDVKLAIQSKVNFSFSQPPPREVL 120

Query: 121 LELARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPV 180
           LELARNRNKIPLPR+IG PGIALP D D L+SPNYQLAIP+KQPVETMEETEE+E VD  
Sbjct: 121 LELARNRNKIPLPRTIGGPGIALPPDLDALVSPNYQLAIPKKQPVETMEETEEEENVDFA 180

Query: 181 PSQEPSTELPQHTPQRVSFPLAKRPKLT 209
            SQEPSTE+PQHTPQRVSFPLAKRPK+T
Sbjct: 181 SSQEPSTEVPQHTPQRVSFPLAKRPKIT 208

[Close]

BLAST of Sed0002362 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 3.0e-95
Identity = 183/206 (88.83%), Postives = 192/206 (93.20%), Query Frame = 0


Query: 4   GSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G G G+DNQNTNFSPE RPSQ G+RG KE++EG+EDLPRDAKIVKTLLKSMGVEDYEPRV
Sbjct: 12  GGGGGYDNQNTNFSPEARPSQLGDRGVKEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRV 71

Query: 64  IHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLEL 123
           IHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE LLEL
Sbjct: 72  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 131

Query: 124 ARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPVPSQ 183
           ARNRNKIPLPRSIG PGIALP DQDTLLSPNYQLAIPRK+ VE MEETEEDEGVD VPSQ
Sbjct: 132 ARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPRKRQVEAMEETEEDEGVDAVPSQ 191

Query: 184 EPSTELP-QHTPQRVSFPLAKRPKLT 209
           EPSTE+P QHTPQRVSFPL+KRPK+T
Sbjct: 192 EPSTEVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Sed0002362 vs. ExPASy TrEMBL
Match: A0A6J1JZ27 (transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=LOC111488713 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 179/206 (86.89%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 4   GSGAGFDNQNTNFSPEPRPSQAGERGSKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRV 63
           G G G+DNQNTNFSPE R SQ G+RG KE++EG+EDLPRDA+IVKTLLKSMGVEDYEPRV
Sbjct: 8   GGGGGYDNQNTNFSPEARTSQLGDRGVKEMSEGDEDLPRDARIVKTLLKSMGVEDYEPRV 67

Query: 64  IHQFLELWYSYVVDVLTDAQVYSEHAAKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLEL 123
           IHQFLELWY YVVDVLTDAQVYSEHA KAAIDCDDVKLAIQSKVNFSFSQPPPRE LLEL
Sbjct: 68  IHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLEL 127

Query: 124 ARNRNKIPLPRSIGQPGIALPLDQDTLLSPNYQLAIPRKQPVETMEETEEDEGVDPVPSQ 183
           ARNRNKIPLPRSIG PGIALP D DTLLSPNYQLAIP+K+PVE MEETEEDEGVD VPSQ
Sbjct: 128 ARNRNKIPLPRSIGGPGIALPPDIDTLLSPNYQLAIPKKRPVEAMEETEEDEGVDTVPSQ 187

Query: 184 EPSTELP-QHTPQRVSFPLAKRPKLT 209
           E STE+P QHTPQRVSFPL+KRPK+T
Sbjct: 188 ELSTEVPQQHTPQRVSFPLSKRPKIT 213

[Close]

BLAST of Sed0002362 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.8e-79
Identity = 162/182 (89.01%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 30  SKEITEGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHA 89
           SKE+++G+E+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWY YVVDVLTDAQVYSEHA
Sbjct: 17  SKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHA 76

Query: 90  AKAAIDCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDT 149
            KAAIDCDDVKLAIQSKVNFSFSQPPPRE LLELARNRNKIPLPRSIG PGIALP DQDT
Sbjct: 77  GKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDT 136

Query: 150 LLSPNYQLAIPRKQPVETMEETEEDEGVDP-VPSQEP-STELP-QHTPQRVSFPLAKRPK 209
           LLSPNYQLAIP+KQ VETMEETEEDEG D  VPSQEP S+E+P QH PQRVSFPLAKRPK
Sbjct: 137 LLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPK 196

[Close]

BLAST of Sed0002362 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.7e-78
Identity = 159/179 (88.83%), Postives = 167/179 (93.30%), Query Frame = 0


Query: 33  ITEGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKA 92
           +++G+E+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWY YVVDVLTDAQVYSEHA KA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 93  AIDCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLS 152
           AIDCDDVKLAIQSKVNFSFSQPPPRE LLELARNRNKIPLPRSIG PGIALP DQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 153 PNYQLAIPRKQPVETMEETEEDEGVDP-VPSQEP-STELP-QHTPQRVSFPLAKRPKLT 209
           PNYQLAIP+KQ VETMEETEEDEG D  VPSQEP S+E+P QH PQRVSFPLAKRPKLT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Sed0002362 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 252.7 bits (644), Expect = 2.6e-67
Identity = 133/180 (73.89%), Postives = 150/180 (83.33%), Query Frame = 0


Query: 35  EGEEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYSYVVDVLTDAQVYSEHAAKAAI 94
           EGEED+PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWY YVV+VLTDAQVYSEHA+K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 95  DCDDVKLAIQSKVNFSFSQPPPREDLLELARNRNKIPLPRSIGQPGIALPLDQDTLLSPN 154
           DCDDVKLAIQSKVNFSFSQPPPRE LLELA +RNKIPLP+SI  PG+ LP +QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 155 YQLAIPRKQPVETMEETEEDEGV-DPVPS-------QEPSTELPQHTPQRVSFPLAKRPK 207
           YQL IP+K      EETE+DE + DP  S       Q+ +++LP  TPQRVSFPL++RPK
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRRPK 183

The following BLAST results are available for this feature:

BLAST of Sed0002362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144675.1	7.3e-96	87.50	transcription initiation factor TFIID subunit 9 [Momordica charantia]	[more]
XP_022953465.1	6.2e-95	88.83	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
KAG7013987.1	2.3e-94	88.15	Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. a...	[more]
KAG6575445.1	6.8e-94	86.51	Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma...	[more]
XP_022992393.1	3.7e-92	86.89	transcription initiation factor TFIID subunit 9 [Cucurbita maxima]	[more]

BLAST of Sed0002362 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	3.7e-66	73.89	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8VI33	1.8e-28	43.21	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q16594	6.8e-28	42.17	Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ...	[more]
Q5BKE0	6.8e-28	42.59	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]
Q6NZA9	4.4e-27	46.88	Transcription initiation factor TFIID subunit 9B OS=Mus musculus OX=10090 GN=Taf...	[more]

BLAST of Sed0002362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSB1	3.5e-96	87.50	transcription initiation factor TFIID subunit 9 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GPP8	3.0e-95	88.83	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JZ27	1.8e-92	86.89	transcription initiation factor TFIID subunit 9 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S4E4D8	1.8e-79	89.01	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CGN5	5.7e-78	88.83	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of Sed0002362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	2.6e-67	73.89	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 38..157 e-value: 9.3E-44 score: 148.4
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 41..157 e-value: 5.63789E-62 score: 186.669
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 41..108 e-value: 1.8E-29 score: 103.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 41..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..40
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 24..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002362.1	Sed0002362.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity