Sed0002332 (gene) Chayote v1

Overview
NameSed0002332
Typegene
OrganismSechium edule (Chayote v1)
Descriptionprotein LYK5-like
LocationLG13: 21454703 .. 21455445 (+)
RNA-Seq ExpressionSed0002332
SyntenySed0002332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCAGACTCTTAAATTCGGTAATAGGTTCCATGAATTGGATCTTCGTCGTGGTGTACTGCTGCACGTGCCGCATAGAAGCGCTTGTCCGACCACGAACCAGGTCCGTACTAGGGTCAATTATTTGATTGGCAATGGCGAAAAGGACAGATTAAAATCCCCGCTATTAATTCTCGTTGACTCACCTTTACTACTCTCTTCAATCGATTCTAGTTGCCCCTTCTACGCTCATCTCTCGCTCTCCAACTTGAAGGTATGTTTTCTCTCTTCGATTTTGTTTGTTTGTTTGATTTTTACTGTTATTCTTTTCTTTTCTTTTTTGTTAATCTTCTCTTTTATTTTGTTCCACTCAGTTCGTTCTCTCTTCATTTTTCTTTAGGCTCTATTTGTTAGAATATTAAATTAGATTTAGTAAGTTTCATATTTTCCTATTTTAGAATCAGTTAGAATAATTATATTTAGTATTTAGTTGTTATTAATTTAAGTTAAGTTAGATTTTATTGATTTTTTTGAGTGCATAAATATGTGTTCTATAGAGAAATAAAATAAGGGAATTTACCCTCTTCTAAATTCAATATGATATCAGAGGTCAATGTGGGTTATTGATTCACCTTTGCCATGTCCAGTGAATTCTCCCATGGCGCATCAATGTACTGTTTTTTTTCTTCTTTTATTTATTTATTTTTCCTTCTCTTCTTTTTCTCAAAGTTCAAGTTGGACGATCTAATAGAGGAATATTAG

mRNA sequence

ATGTGCCAGACTCTTAAATTCGGTAATAGGTTCCATGAATTGGATCTTCGTCGTGGTGTACTGCTGCACGTGCCGCATAGAAGCGCTTGTCCGACCACGAACCAGGTCCGTACTAGGGTCAATTATTTGATTGGCAATGGCGAAAAGGACAGATTAAAATCCCCGCTATTAATTCTCGTTGACTCACCTTTACTACTCTCTTCAATCGATTCTAGTTGCCCCTTCTACGCTCATCTCTCGCTCTCCAACTTGAAGTTCAAGTTGGACGATCTAATAGAGGAATATTAG

Coding sequence (CDS)

ATGTGCCAGACTCTTAAATTCGGTAATAGGTTCCATGAATTGGATCTTCGTCGTGGTGTACTGCTGCACGTGCCGCATAGAAGCGCTTGTCCGACCACGAACCAGGTCCGTACTAGGGTCAATTATTTGATTGGCAATGGCGAAAAGGACAGATTAAAATCCCCGCTATTAATTCTCGTTGACTCACCTTTACTACTCTCTTCAATCGATTCTAGTTGCCCCTTCTACGCTCATCTCTCGCTCTCCAACTTGAAGTTCAAGTTGGACGATCTAATAGAGGAATATTAG

Protein sequence

MCQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLIGNGEKDRLKSPLLILVDSPLLLSSIDSSCPFYAHLSLSNLKFKLDDLIEEY
Homology
BLAST of Sed0002332 vs. NCBI nr
Match: XP_023001993.1 (protein LYK5-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLI 45
           CQ LKFGNRFHELDLR G+ LHVP R AC TTNQ R  V YL+
Sbjct: 134 CQGLKFGNRFHELDLRAGLKLHVPLRCACSTTNQARKGVEYLV 176

BLAST of Sed0002332 vs. NCBI nr
Match: XP_022951877.1 (protein LYK5-like [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLIGN--GEKD 51
           CQ LKFGN+FHELDLR G+ L VP R ACPTTNQ R  V YL+    GE D
Sbjct: 134 CQALKFGNKFHELDLRAGLKLLVPLRCACPTTNQARKGVEYLVAYLVGEDD 184

BLAST of Sed0002332 vs. NCBI nr
Match: KAG7020534.1 (LysM domain receptor-like kinase 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLI 45
           CQ LKFGN+FHELDLR G+ L VP R ACPTTNQ R  V YL+
Sbjct: 134 CQALKFGNKFHELDLRAGLKLLVPLRCACPTTNQARKGVEYLV 176

BLAST of Sed0002332 vs. NCBI nr
Match: XP_023538340.1 (protein LYK5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLI 45
           CQ LKFGN+FHELDLR G+ L VP R ACPTTNQ R  V YL+
Sbjct: 134 CQALKFGNKFHELDLRAGLKLLVPLRCACPTTNQARKGVEYLV 176

BLAST of Sed0002332 vs. NCBI nr
Match: XP_011650189.1 (protein LYK5 [Cucumis sativus] >KGN62566.1 hypothetical protein Csa_022488 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 9.3e-06
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQ----VRTRVNYLIGNGEK 50
           CQ LKF N F EL+LR G++L VP R ACPT NQ    V+    YL+GNGE+
Sbjct: 139 CQALKFANGFEELNLRAGMILLVPLRCACPTGNQAGIGVKFLATYLVGNGER 190

BLAST of Sed0002332 vs. ExPASy TrEMBL
Match: A0A6J1KS69 (protein LYK5-like OS=Cucurbita maxima OX=3661 GN=LOC111496011 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.7e-09
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLI 45
           CQ LKFGNRFHELDLR G+ LHVP R AC TTNQ R  V YL+
Sbjct: 134 CQGLKFGNRFHELDLRAGLKLHVPLRCACSTTNQARKGVEYLV 176

BLAST of Sed0002332 vs. ExPASy TrEMBL
Match: A0A6J1GIV8 (protein LYK5-like OS=Cucurbita moschata OX=3662 GN=LOC111454613 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQVRTRVNYLIGN--GEKD 51
           CQ LKFGN+FHELDLR G+ L VP R ACPTTNQ R  V YL+    GE D
Sbjct: 134 CQALKFGNKFHELDLRAGLKLLVPLRCACPTTNQARKGVEYLVAYLVGEDD 184

BLAST of Sed0002332 vs. ExPASy TrEMBL
Match: A0A0A0LRF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360830 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.5e-06
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQ----VRTRVNYLIGNGEK 50
           CQ LKF N F EL+LR G++L VP R ACPT NQ    V+    YL+GNGE+
Sbjct: 139 CQALKFANGFEELNLRAGMILLVPLRCACPTGNQAGIGVKFLATYLVGNGER 190

BLAST of Sed0002332 vs. ExPASy TrEMBL
Match: A0A5A7VAS3 (Protein LYK5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006050 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQ----VRTRVNYLIGNGEK 50
           CQ LKF N F EL+LR G++L VP R ACPT NQ    V+    YL+G GE+
Sbjct: 139 CQALKFANGFEELNLRPGMILLVPLRCACPTGNQTGIGVKFLATYLVGYGER 190

BLAST of Sed0002332 vs. ExPASy TrEMBL
Match: A0A1S3BBQ2 (protein LYK5-like OS=Cucumis melo OX=3656 GN=LOC103487938 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.0e-05
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 2   CQTLKFGNRFHELDLRRGVLLHVPHRSACPTTNQ----VRTRVNYLIGNGEK 50
           CQ LKF N F EL+LR G++L VP R ACPT NQ    V+    YL+G GE+
Sbjct: 143 CQALKFANGFEELNLRPGMILLVPLRCACPTGNQTGIGVKFLATYLVGYGER 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023001993.12.0e-0872.09protein LYK5-like [Cucurbita maxima][more]
XP_022951877.13.4e-0864.71protein LYK5-like [Cucurbita moschata][more]
KAG7020534.15.8e-0869.77LysM domain receptor-like kinase 4, partial [Cucurbita argyrosperma subsp. argyr... [more]
XP_023538340.15.8e-0869.77protein LYK5-like [Cucurbita pepo subsp. pepo][more]
XP_011650189.19.3e-0655.77protein LYK5 [Cucumis sativus] >KGN62566.1 hypothetical protein Csa_022488 [Cucu... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KS699.7e-0972.09protein LYK5-like OS=Cucurbita maxima OX=3661 GN=LOC111496011 PE=4 SV=1[more]
A0A6J1GIV81.7e-0864.71protein LYK5-like OS=Cucurbita moschata OX=3662 GN=LOC111454613 PE=4 SV=1[more]
A0A0A0LRF44.5e-0655.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360830 PE=4 SV=1[more]
A0A5A7VAS35.0e-0553.85Protein LYK5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006... [more]
A0A1S3BBQ25.0e-0553.85protein LYK5-like OS=Cucumis melo OX=3656 GN=LOC103487938 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002332.1Sed0002332.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane