Sed0002316 (gene) Chayote v1

Overview


Name	Sed0002316
Type	gene
Organism	Sechium edule (Chayote v1)
Description	FAS1 domain-containing protein
Location	LG08: 33498975 .. 33499358 (+)
RNA-Seq Expression	Sed0002316
Synteny	Sed0002316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGATCAACACCACCACTCAGCGAAACCTAAAGGACGTAACCTTCTTCGTTCCCCAAGACTTCGAGCTCTCCAGCGTCTCCATCCCCGCCAACCGTCTCGATGCGTTCGTGCTCAGCCATTTGATCCCCATGCCGCTGAAATTCGACGGCTTGGTTCGGTTTCCCACCGGCTCCGTCATTCCTTCGGGTTACCGTAATTGGATGATCAGAATCTATAACCACGGAAGCAAACATTTTGTTGTCAATAATGCTGTAGTTGATGTTCCTAATGTTTGTTCTAGTTCTAAGGGTATTAAGTGCCATGGGGTTAATAAGGTCATATACTATGGTGATGATAGTTAA

mRNA sequence

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGATCAACACCACCACTCAGCGAAACCTAAAGGACGTAACCTTCTTCGTTCCCCAAGACTTCGAGCTCTCCAGCGTCTCCATCCCCGCCAACCGTCTCGATGCGTTCGTGCTCAGCCATTTGATCCCCATGCCGCTGAAATTCGACGGCTTGGTTCGGTTTCCCACCGGCTCCGTCATTCCTTCGGGTTACCGTAATTGGATGATCAGAATCTATAACCACGGAAGCAAACATTTTGTTGTCAATAATGCTGTAGTTGATGTTCCTAATGTTTGTTCTAGTTCTAAGGGTATTAAGTGCCATGGGGTTAATAAGGTCATATACTATGGTGATGATAGTTAA

Coding sequence (CDS)

ATGAAGGCCAAATCCTTCTATGGCTTTGCCATCCTTCTCCAAATGATCAACACCACCACTCAGCGAAACCTAAAGGACGTAACCTTCTTCGTTCCCCAAGACTTCGAGCTCTCCAGCGTCTCCATCCCCGCCAACCGTCTCGATGCGTTCGTGCTCAGCCATTTGATCCCCATGCCGCTGAAATTCGACGGCTTGGTTCGGTTTCCCACCGGCTCCGTCATTCCTTCGGGTTACCGTAATTGGATGATCAGAATCTATAACCACGGAAGCAAACATTTTGTTGTCAATAATGCTGTAGTTGATGTTCCTAATGTTTGTTCTAGTTCTAAGGGTATTAAGTGCCATGGGGTTAATAAGGTCATATACTATGGTGATGATAGTTAA

Protein sequence

MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPLKFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKVIYYGDDS

Homology

[Close]

BLAST of Sed0002316 vs. NCBI nr
Match: XP_038893487.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida])

HSP 1 Score: 201.1 bits (510), Expect = 5.9e-48
Identity = 95/127 (74.80%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           MKAKSFYGFAILLQM+N TTQ  LK++TFF+PQD +LS++SI  +RL+AFVLSHLI MPL
Sbjct: 44  MKAKSFYGFAILLQMLNITTQLTLKEITFFIPQDPQLSNISIAVDRLEAFVLSHLIVMPL 103

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGY N MIRI+NHG  HFVVNNAVV+VPNVCSSS+ IKCHGVNKV
Sbjct: 104 EFSDLIRFPTGSIVPSGYHNRMIRIHNHGRGHFVVNNAVVNVPNVCSSSESIKCHGVNKV 163

Query: 121 IYYGDDS 128
           I YG DS
Sbjct: 164 IDYGRDS 170

[Close]

BLAST of Sed0002316 vs. NCBI nr
Match: XP_008463608.1 (PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 1.9e-46
Identity = 92/124 (74.19%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           MKA+SFYGFAILLQM+N TTQ  LK++TFF+PQD +LS++SI  N L+AFVLSHLI MPL
Sbjct: 38  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDSQLSNISIAVNHLEAFVLSHLIVMPL 97

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGY N MIRI+N+G  HFVVNNAVV+VPNVCSSS GIKCHGVNKV
Sbjct: 98  QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 157

Query: 121 IYYG 125
           I YG
Sbjct: 158 INYG 161

[Close]

BLAST of Sed0002316 vs. NCBI nr
Match: XP_011648466.2 (FAS1 domain-containing protein SELMODRAFT_448915, partial [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 90/124 (72.58%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           MKA+SFYGFAILLQM+N TTQ  LK++TFF+PQD ++S++SI  +RL+AFVLSH+I MPL
Sbjct: 47  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDPQISNISIAVDRLEAFVLSHMILMPL 106

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGY N MIRI+N+G  HFVVNNAVV+VPNVCSSS GIKCHGVNKV
Sbjct: 107 QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 166

Query: 121 IYYG 125
           I YG
Sbjct: 167 INYG 170

[Close]

BLAST of Sed0002316 vs. NCBI nr
Match: XP_022927494.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata] >KAG7019381.1 FAS1 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.0 bits (484), Expect = 6.1e-45
Identity = 86/125 (68.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+A+SFYGFAILLQM+N TTQ  L+D+TFF+P D +LS++SIP +RL++FVLSH I MPL
Sbjct: 17  MRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPL 76

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGYRN MIRI+NHG  HF+VNNA V VPNVCSSS+GIKCHG++KV
Sbjct: 77  QFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKV 136

Query: 121 IYYGD 126
           + YG+
Sbjct: 137 LDYGN 141

[Close]

BLAST of Sed0002316 vs. NCBI nr
Match: XP_023001077.1 (FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-44
Identity = 85/125 (68.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+A+SFYGFAILLQM+N TTQ  L+D+TFF+P D +LS++SIP + L++FVLSH I MPL
Sbjct: 42  MRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDHLESFVLSHSIVMPL 101

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGYRN MIRI+NHG  HF+VNNA V +PNVCSSS GIKCHG++KV
Sbjct: 102 QFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNVCSSSGGIKCHGIDKV 161

Query: 121 IYYGD 126
           I YG+
Sbjct: 162 IDYGN 166

[Close]

BLAST of Sed0002316 vs. ExPASy Swiss-Prot
Match: P0DH64 (FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_448915 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 26/98 (26.53%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 28  TFFVPQDFELSSVSIPANRLDAF--VLSHLIPMPLKFDGLVRFPTGSVIPSGYRNWMIRI 87
           T  +P +  ++ V    ++ D    +  H++  P  F+ L R   G+ +P+  +  MI +
Sbjct: 103 TLLIPSNNAIAGVDANLSQEDIINTLQYHVLTFPTSFEALSRNDVGAELPTMLQGEMITV 162

Query: 88  YNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKVIYY 124
            ++   +F +N   +  P+VCSS++ I CHG+++V+ Y
Sbjct: 163 TSNSPGNFTLNEVNITHPDVCSSTRFIACHGIDRVLAY 200

[Close]

BLAST of Sed0002316 vs. ExPASy TrEMBL
Match: A0A1S3CJM9 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucumis melo OX=3656 GN=LOC103501717 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.2e-47
Identity = 92/124 (74.19%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           MKA+SFYGFAILLQM+N TTQ  LK++TFF+PQD +LS++SI  N L+AFVLSHLI MPL
Sbjct: 38  MKAQSFYGFAILLQMLNITTQLTLKEITFFIPQDSQLSNISIAVNHLEAFVLSHLIVMPL 97

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGY N MIRI+N+G  HFVVNNAVV+VPNVCSSS GIKCHGVNKV
Sbjct: 98  QFSDLIRFPTGSIVPSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKV 157

Query: 121 IYYG 125
           I YG
Sbjct: 158 INYG 161

[Close]

BLAST of Sed0002316 vs. ExPASy TrEMBL
Match: A0A6J1EI57 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita moschata OX=3662 GN=LOC111434302 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 86/125 (68.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+A+SFYGFAILLQM+N TTQ  L+D+TFF+P D +LS++SIP +RL++FVLSH I MPL
Sbjct: 17  MRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDRLESFVLSHSIVMPL 76

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGYRN MIRI+NHG  HF+VNNA V VPNVCSSS+GIKCHG++KV
Sbjct: 77  QFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTVPNVCSSSEGIKCHGIDKV 136

Query: 121 IYYGD 126
           + YG+
Sbjct: 137 LDYGN 141

[Close]

BLAST of Sed0002316 vs. ExPASy TrEMBL
Match: A0A6J1KFG1 (FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita maxima OX=3661 GN=LOC111495332 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.9e-44
Identity = 85/125 (68.00%), Postives = 107/125 (85.60%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+A+SFYGFAILLQM+N TTQ  L+D+TFF+P D +LS++SIP + L++FVLSH I MPL
Sbjct: 42  MRAQSFYGFAILLQMLNATTQLTLRDITFFIPLDPQLSNISIPTDHLESFVLSHSIVMPL 101

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSGYRN MIRI+NHG  HF+VNNA V +PNVCSSS GIKCHG++KV
Sbjct: 102 QFSDLIRFPTGSIVPSGYRNRMIRIHNHGRGHFLVNNAAVTIPNVCSSSGGIKCHGIDKV 161

Query: 121 IYYGD 126
           I YG+
Sbjct: 162 IDYGN 166

[Close]

BLAST of Sed0002316 vs. ExPASy TrEMBL
Match: A0A6J1CM20 (uncharacterized protein LOC111012702 OS=Momordica charantia OX=3673 GN=LOC111012702 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.9e-40
Identity = 80/124 (64.52%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+AKSFYGFAILLQM+N TTQ  L+D+TFF+P+D +LS++SI   RL+AFV SH I MPL
Sbjct: 43  MRAKSFYGFAILLQMLNATTQLALRDITFFIPRDAQLSNISIAVGRLEAFVFSHFIAMPL 102

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
           +F  L+RFPTGS++PSG  N MIR++NHG  HF+VNNA V VPNVC++   +KCHGVN+V
Sbjct: 103 QFSDLIRFPTGSMVPSGVHNRMIRVHNHGRAHFLVNNAEVTVPNVCATHT-VKCHGVNRV 162

Query: 121 IYYG 125
           I YG
Sbjct: 163 IDYG 165

[Close]

BLAST of Sed0002316 vs. ExPASy TrEMBL
Match: A0A5D3E4N2 (FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00750 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.4e-39
Identity = 79/110 (71.82%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 15  MINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPLKFDGLVRFPTGSVI 74
           M+N TTQ  LK++TFF+PQD +LS++SI  N L+AFVLSHLI MPL+F  L+RFPTGS++
Sbjct: 1   MLNITTQLTLKEITFFIPQDSQLSNISIAVNHLEAFVLSHLIVMPLQFSDLIRFPTGSIV 60

Query: 75  PSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKVIYYG 125
           PSGY N MIRI+N+G  HFVVNNAVV+VPNVCSSS GIKCHGVNKVI YG
Sbjct: 61  PSGYHNRMIRIHNNGRGHFVVNNAVVNVPNVCSSSLGIKCHGVNKVINYG 110

[Close]

BLAST of Sed0002316 vs. TAIR 10
Match: AT5G26730.1 (Fasciclin-like arabinogalactan family protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-19
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 1   MKAKSFYGFAILLQMINTTTQRNLKDVTFFVPQDFELSSVSIPANRLDAFVLSHLIPMPL 60
           M+ +S+ GF ILL+ +N T      D+TF +P D ++S   I    L+ F+L H IP  L
Sbjct: 125 MRRQSYNGFVILLRFLNDTNYFRNTDITFLMPSDNDISHADITPESLETFILKHTIPAWL 184

Query: 61  KFDGLVRFPTGSVIPSGYRNWMIRIYNHGSKHFVVNNAVVDVPNVCSSSKGIKCHGVNKV 120
             + ++ FP  +++P  + + M  I   G     VNNA +  PNVC +S+ I CHG++ V
Sbjct: 185 MINHMLHFPNRTLVPCSFSDRMFTITKSGGSGIYVNNARIVTPNVCQNSR-ISCHGISDV 244

Query: 121 IYYGDD 127
           I +  +
Sbjct: 245 ISFNQN 249

The following BLAST results are available for this feature:

BLAST of Sed0002316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893487.1	5.9e-48	74.80	FAS1 domain-containing protein SELMODRAFT_448915-like [Benincasa hispida]	[more]
XP_008463608.1	1.9e-46	74.19	PREDICTED: FAS1 domain-containing protein SELMODRAFT_448915-like [Cucumis melo]	[more]
XP_011648466.2	1.2e-45	72.58	FAS1 domain-containing protein SELMODRAFT_448915, partial [Cucumis sativus]	[more]
XP_022927494.1	6.1e-45	68.80	FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita moschata] >KAG7...	[more]
XP_023001077.1	4.0e-44	68.00	FAS1 domain-containing protein SELMODRAFT_448915-like [Cucurbita maxima]	[more]

BLAST of Sed0002316 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DH64	4.0e-07	26.53	FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii O...	[more]

BLAST of Sed0002316 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJM9	9.2e-47	74.19	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1EI57	3.0e-45	68.80	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1KFG1	1.9e-44	68.00	FAS1 domain-containing protein SELMODRAFT_448915-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1CM20	4.9e-40	64.52	uncharacterized protein LOC111012702 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5D3E4N2	2.4e-39	71.82	FAS1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Sed0002316 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26730.1	2.1e-19	34.92	Fasciclin-like arabinogalactan family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36069:SF3	ARABINOGALACTAN FAMILY PROTEIN, PUTATIVE-RELATED	coord: 1..126
None	No IPR available	PANTHER	PTHR36069	EXPRESSED PROTEIN-RELATED	coord: 1..126
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 12..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002316.1	Sed0002316.1	mRNA