Sed0002237 (gene) Chayote v1

Overview


Name	Sed0002237
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Casein kinase substrate, phosphoprotein PP28
Location	LG14: 23308470 .. 23308808 (+)
RNA-Seq Expression	Sed0002237
Synteny	Sed0002237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAATCCAATCCTTCTTCTCGTCTACCTAAAATTGCGAATGAAATCAGCAGCAATGGCGCCAAGGCCGAATCCACGGGTCAAAGGGCCCGGTACCCGAACCCGCCGGAGATCCAGAATCCGGACGCGGCAACGCTTCGAGATCAATGGAGGTTTGCGATCAGGCAGTACAGTAAATGGTACTCGCACGCTTGGGGGACGGCTGTTCTCGCTGGAATCTCATTCTTCGCTCTCGGTTGGGCTATTAAGGGTTCCAATCCTCTCCCCTCTCGCCGGGATGATTCCATTTCGCCTTCTTCCTCTGCTTCCGCGAACCAACCTGAACCTCGCCCTTGA

mRNA sequence

ATGACAGAATCCAATCCTTCTTCTCGTCTACCTAAAATTGCGAATGAAATCAGCAGCAATGGCGCCAAGGCCGAATCCACGGGTCAAAGGGCCCGGTACCCGAACCCGCCGGAGATCCAGAATCCGGACGCGGCAACGCTTCGAGATCAATGGAGGTTTGCGATCAGGCAGTACAGTAAATGGTACTCGCACGCTTGGGGGACGGCTGTTCTCGCTGGAATCTCATTCTTCGCTCTCGGTTGGGCTATTAAGGGTTCCAATCCTCTCCCCTCTCGCCGGGATGATTCCATTTCGCCTTCTTCCTCTGCTTCCGCGAACCAACCTGAACCTCGCCCTTGA

Coding sequence (CDS)

ATGACAGAATCCAATCCTTCTTCTCGTCTACCTAAAATTGCGAATGAAATCAGCAGCAATGGCGCCAAGGCCGAATCCACGGGTCAAAGGGCCCGGTACCCGAACCCGCCGGAGATCCAGAATCCGGACGCGGCAACGCTTCGAGATCAATGGAGGTTTGCGATCAGGCAGTACAGTAAATGGTACTCGCACGCTTGGGGGACGGCTGTTCTCGCTGGAATCTCATTCTTCGCTCTCGGTTGGGCTATTAAGGGTTCCAATCCTCTCCCCTCTCGCCGGGATGATTCCATTTCGCCTTCTTCCTCTGCTTCCGCGAACCAACCTGAACCTCGCCCTTGA

Protein sequence

MTESNPSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP

Homology

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BLAST of Sed0002237 vs. NCBI nr
Match: XP_022142178.1 (uncharacterized protein LOC111012359 [Momordica charantia] >XP_022142179.1 uncharacterized protein LOC111012359 [Momordica charantia] >XP_022142180.1 uncharacterized protein LOC111012359 [Momordica charantia] >XP_022142181.1 uncharacterized protein LOC111012359 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 91/115 (79.13%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MTESNPS---SRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQ 60
           MTESNPS   S  PKI NEISS G KAE TGQR RYPNPPEIQNPD ATLRDQWRFAI+Q
Sbjct: 1   MTESNPSSGPSPSPKIPNEISSGGPKAEFTGQRVRYPNPPEIQNPDPATLRDQWRFAIKQ 60

Query: 61  YSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           YSKWYSHAWGTA+LAGISFF LGW IKGSNPLPSR++DS SPSSSAS    + RP
Sbjct: 61  YSKWYSHAWGTAILAGISFFTLGWIIKGSNPLPSRQEDSNSPSSSASTGSQQARP 115

[Close]

BLAST of Sed0002237 vs. NCBI nr
Match: KAG6594573.1 (hypothetical protein SDJN03_11126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 8.0e-41
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 5   NPSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQYSKWYSH 64
           NPSS  PK  NEISS G KAESTGQR R+PNPPEI NPD ATLRDQWRFAIRQYSKWYSH
Sbjct: 10  NPSSSQPKAMNEISSGGPKAESTGQRVRFPNPPEIHNPDPATLRDQWRFAIRQYSKWYSH 69

Query: 65  AWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           AWGTA+LAGISFFALGW IKGSNPLPSR+DDS SP+SSAS    E RP
Sbjct: 70  AWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPASSASNTAREARP 117

[Close]

BLAST of Sed0002237 vs. NCBI nr
Match: XP_023517198.1 (uncharacterized protein LOC111781034 [Cucurbita pepo subsp. pepo] >XP_023517199.1 uncharacterized protein LOC111781034 [Cucurbita pepo subsp. pepo] >XP_023517200.1 uncharacterized protein LOC111781034 [Cucurbita pepo subsp. pepo] >XP_023517201.1 uncharacterized protein LOC111781034 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.2 bits (448), Expect = 8.0e-41
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 5   NPSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQYSKWYSH 64
           NPSS  PK  NEISS G KAESTGQR R+PNPPEI NPD ATLRDQWRFAIRQYSKWYSH
Sbjct: 10  NPSSSQPKTMNEISSGGPKAESTGQRVRFPNPPEIHNPDPATLRDQWRFAIRQYSKWYSH 69

Query: 65  AWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           AWGTA+LAGISFFALGW IKGSNPLPSR+DDS SP+SSAS    E RP
Sbjct: 70  AWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPASSASNTAHEARP 117

[Close]

BLAST of Sed0002237 vs. NCBI nr
Match: XP_038882870.1 (uncharacterized protein LOC120073989 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 89/116 (76.72%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   MTESN----PSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIR 60
           MTESN    PS   PK +NE+SS   K ESTG R R+PNPPEIQNPD ATLRDQWRFAI+
Sbjct: 1   MTESNPPVDPSPSHPKTSNEVSSGAPKVESTGHRVRFPNPPEIQNPDPATLRDQWRFAIK 60

Query: 61  QYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           QYSKWYSHAWGTA+LAGISFFALGW IKGSNPLPSR+DDS SPSSSAS   PE RP
Sbjct: 61  QYSKWYSHAWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPSSSASTTAPEARP 116

[Close]

BLAST of Sed0002237 vs. NCBI nr
Match: XP_008439791.1 (PREDICTED: uncharacterized protein LOC103484482 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MTESN----PSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIR 60
           MTESN    PS   PK++NE+ +   K+E TGQR R+PNPPEIQNPD ATLRDQWRFAIR
Sbjct: 1   MTESNLPNDPSPSHPKMSNEVGTGAPKSEFTGQRVRFPNPPEIQNPDPATLRDQWRFAIR 60

Query: 61  QYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           QYSKWYSHAWGTA+LAGISFFALGW IKGSNPLPSR+DDS SPSSSAS + PE RP
Sbjct: 61  QYSKWYSHAWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPSSSASTSAPEARP 116

[Close]

BLAST of Sed0002237 vs. ExPASy TrEMBL
Match: A0A6J1CLG2 (uncharacterized protein LOC111012359 OS=Momordica charantia OX=3673 GN=LOC111012359 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 91/115 (79.13%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MTESNPS---SRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQ 60
           MTESNPS   S  PKI NEISS G KAE TGQR RYPNPPEIQNPD ATLRDQWRFAI+Q
Sbjct: 1   MTESNPSSGPSPSPKIPNEISSGGPKAEFTGQRVRYPNPPEIQNPDPATLRDQWRFAIKQ 60

Query: 61  YSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           YSKWYSHAWGTA+LAGISFF LGW IKGSNPLPSR++DS SPSSSAS    + RP
Sbjct: 61  YSKWYSHAWGTAILAGISFFTLGWIIKGSNPLPSRQEDSNSPSSSASTGSQQARP 115

[Close]

BLAST of Sed0002237 vs. ExPASy TrEMBL
Match: A0A6J1KSR1 (uncharacterized protein LOC111497255 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497255 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 88/108 (81.48%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 5   NPSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIRQYSKWYSH 64
           NPSS  PK  NEISS G KAESTGQR R+PNPPEI NPD ATLRDQWRFAIRQYSKWYSH
Sbjct: 10  NPSSSQPKTMNEISSAGPKAESTGQRVRFPNPPEIHNPDPATLRDQWRFAIRQYSKWYSH 69

Query: 65  AWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           AWGTA+LAGISFFALGW IKGSNPLPSR+DDS SP+SSAS    E RP
Sbjct: 70  AWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPASSASNTAREARP 117

[Close]

BLAST of Sed0002237 vs. ExPASy TrEMBL
Match: A0A1S3B0A9 (uncharacterized protein LOC103484482 OS=Cucumis melo OX=3656 GN=LOC103484482 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MTESN----PSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIR 60
           MTESN    PS   PK++NE+ +   K+E TGQR R+PNPPEIQNPD ATLRDQWRFAIR
Sbjct: 1   MTESNLPNDPSPSHPKMSNEVGTGAPKSEFTGQRVRFPNPPEIQNPDPATLRDQWRFAIR 60

Query: 61  QYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           QYSKWYSHAWGTA+LAGISFFALGW IKGSNPLPSR+DDS SPSSSAS + PE RP
Sbjct: 61  QYSKWYSHAWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPSSSASTSAPEARP 116

[Close]

BLAST of Sed0002237 vs. ExPASy TrEMBL
Match: A0A5A7UGL5 (Casein kinase substrate, phosphoprotein PP28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007870 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.5e-40
Identity = 87/116 (75.00%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MTESN----PSSRLPKIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAIR 60
           MTESN    PS   PK++NE+ +   K+E TGQ+ R+PNPPEIQNPD ATLRDQWRFAIR
Sbjct: 1   MTESNLPNDPSPSHPKMSNEVGTGAPKSEFTGQKVRFPNPPEIQNPDPATLRDQWRFAIR 60

Query: 61  QYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           QYSKWYSHAWGTA+LAGISFFALGW IKGSNPLPSR+DDS SPSSSAS + PE RP
Sbjct: 61  QYSKWYSHAWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPSSSASTSAPEARP 116

[Close]

BLAST of Sed0002237 vs. ExPASy TrEMBL
Match: A0A6J1EFX8 (uncharacterized protein LOC111433820 OS=Cucurbita moschata OX=3662 GN=LOC111433820 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.3e-40
Identity = 90/117 (76.92%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MTESNPSSRLP-----KIANEISSNGAKAESTGQRARYPNPPEIQNPDAATLRDQWRFAI 60
           MT+SNP S  P     K  NEISS G KAESTGQR R+PNPPEI NPD ATLRDQWRFAI
Sbjct: 1   MTDSNPPSGNPSSSQLKTMNEISSGGPKAESTGQRVRFPNPPEIHNPDPATLRDQWRFAI 60

Query: 61  RQYSKWYSHAWGTAVLAGISFFALGWAIKGSNPLPSRRDDSISPSSSASANQPEPRP 113
           RQYSKWYSHAWGTA+LAGISFFALGW IKGSNPLPSR+DDS SP+SSAS    E RP
Sbjct: 61  RQYSKWYSHAWGTAILAGISFFALGWVIKGSNPLPSRQDDSNSPASSASNTAREARP 117

[Close]

BLAST of Sed0002237 vs. TAIR 10
Match: AT1G28540.1 (unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-26
Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 8  SRLPKIANEISSNGAKAE---STGQRARYPNPPEIQNPDAATLRDQWRFAIRQYSKWYSH 67
          S++P   N  SS+  K      +G   RY NPPE  NPD ATLR+QW+FAIRQYSKWYSH
Sbjct: 5  SQIPDNNNNTSSSAKKPTPEIGSGSGKRYYNPPESVNPDQATLREQWKFAIRQYSKWYSH 64

Query: 68 AWGTAVLAGISFFALGWAIKGSNPLPSRRDDS 97
          AWGTA+LAG  FF LGW IKGSNPLPS +  S
Sbjct: 65 AWGTAILAGGFFFGLGWIIKGSNPLPSLQSSS 96

The following BLAST results are available for this feature:

BLAST of Sed0002237 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142178.1	3.6e-41	79.13	uncharacterized protein LOC111012359 [Momordica charantia] >XP_022142179.1 uncha...	[more]
KAG6594573.1	8.0e-41	81.48	hypothetical protein SDJN03_11126, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517198.1	8.0e-41	81.48	uncharacterized protein LOC111781034 [Cucurbita pepo subsp. pepo] >XP_023517199....	[more]
XP_038882870.1	1.0e-40	76.72	uncharacterized protein LOC120073989 [Benincasa hispida]	[more]
XP_008439791.1	1.4e-40	75.86	PREDICTED: uncharacterized protein LOC103484482 [Cucumis melo]	[more]

BLAST of Sed0002237 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002237 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLG2	1.7e-41	79.13	uncharacterized protein LOC111012359 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1KSR1	6.6e-41	81.48	uncharacterized protein LOC111497255 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3B0A9	6.6e-41	75.86	uncharacterized protein LOC103484482 OS=Cucumis melo OX=3656 GN=LOC103484482 PE=...	[more]
A0A5A7UGL5	1.5e-40	75.00	Casein kinase substrate, phosphoprotein PP28 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1EFX8	3.3e-40	76.92	uncharacterized protein LOC111433820 OS=Cucurbita moschata OX=3662 GN=LOC1114338...	[more]

BLAST of Sed0002237 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28540.1	6.0e-26	61.96	unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..112
None	No IPR available	PANTHER	PTHR37186	OS06G0524500 PROTEIN	coord: 7..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002237.1	Sed0002237.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0009527	plastid outer membrane
molecular_function	GO:0016301	kinase activity