Sed0002222 (gene) Chayote v1

Overview


Name	Sed0002222
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG01: 6564816 .. 6565151 (+)
RNA-Seq Expression	Sed0002222
Synteny	Sed0002222

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCCCTAAAGTTCTTGTCAGCCTTCCAAAACAAAATGGGTCAATTCGGAGAGTCGTTCGAGCGTGGCCTTATGTACGTTGACGCTTGGGTCAACCAGAGATCGGCCAAGAGTACCATGGTCGACTCTAGAGCCATTCATAACTTCATGATTGAAGCTGAGGCACGACGGCTGAACCTACAATGGGACCGAGATTCAGGAAAGATGAAAGCAATTAATTTGGCAGTGTTACCCATCCTAATAGTAGAACTAAACACAGAATGCTCCTTGAGCTGCAGATCACCACCCAAACTACCCTCACAAACAAACCATAAAGTTACAACCGAAGCATAA

mRNA sequence

ATGGGAGCCCTAAAGTTCTTGTCAGCCTTCCAAAACAAAATGGGTCAATTCGGAGAGTCGTTCGAGCGTGGCCTTATGTACGTTGACGCTTGGGTCAACCAGAGATCGGCCAAGAGTACCATGGTCGACTCTAGAGCCATTCATAACTTCATGATTGAAGCTGAGGCACGACGGCTGAACCTACAATGGGACCGAGATTCAGGAAAGATGAAAGCAATTAATTTGGCAGTGTTACCCATCCTAATAGTAGAACTAAACACAGAATGCTCCTTGAGCTGCAGATCACCACCCAAACTACCCTCACAAACAAACCATAAAGTTACAACCGAAGCATAA

Coding sequence (CDS)

ATGGGAGCCCTAAAGTTCTTGTCAGCCTTCCAAAACAAAATGGGTCAATTCGGAGAGTCGTTCGAGCGTGGCCTTATGTACGTTGACGCTTGGGTCAACCAGAGATCGGCCAAGAGTACCATGGTCGACTCTAGAGCCATTCATAACTTCATGATTGAAGCTGAGGCACGACGGCTGAACCTACAATGGGACCGAGATTCAGGAAAGATGAAAGCAATTAATTTGGCAGTGTTACCCATCCTAATAGTAGAACTAAACACAGAATGCTCCTTGAGCTGCAGATCACCACCCAAACTACCCTCACAAACAAACCATAAAGTTACAACCGAAGCATAA

Protein sequence

MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSLSCRSPPKLPSQTNHKVTTEA

Homology

[Close]

BLAST of Sed0002222 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-24
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLSA Q K  +  E  ERGLMYV+AWVNQ++AKSTMVDS A HNFM E EARRLN
Sbjct: 401 MGALKFLSALQKKAEEVKEPLERGLMYVEAWVNQKAAKSTMVDSGATHNFMTETEARRLN 460

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L WD+D GKMKA+N A LPI+
Sbjct: 461 LXWDKDPGKMKAVNSAALPIM 481

[Close]

BLAST of Sed0002222 vs. NCBI nr
Match: KAA0060480.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+N++  KSTMVDS A HNF+IEAEA+RLN
Sbjct: 407 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINEKPTKSTMVDSGATHNFIIEAEAKRLN 466

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L+W++D+G+MKA+N A LPI+
Sbjct: 467 LRWEKDAGRMKAVNSAALPII 487

[Close]

BLAST of Sed0002222 vs. NCBI nr
Match: KAA0060662.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ E EA+RLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEIEAKRLN 500

Query: 61  LQWDRDSGKMKAINLAVLPILIVELNTECSL 92
           L+W++D+G+MKA+N A LPI+ +E  T  +L
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLEKRTMITL 531

[Close]

BLAST of Sed0002222 vs. NCBI nr
Match: KAA0051481.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+S KSTMVDS A HNF+ E EA+RLN
Sbjct: 292 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKSTKSTMVDSGATHNFITEVEAKRLN 351

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L+W++D+G+MKA+N A LPI+
Sbjct: 352 LRWEKDAGRMKAVNSAALPII 372

[Close]

BLAST of Sed0002222 vs. NCBI nr
Match: KAA0066677.1 (uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.7e-22
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+   S ERGLMYVD W NQ+  KSTMVDS A HNF+ E EA+RLN
Sbjct: 377 MGALKFLSSLQKKVGETNTSVERGLMYVDTWTNQKPTKSTMVDSGATHNFITEVEAKRLN 436

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L+W++D+G+MKA+N A LPI+
Sbjct: 437 LRWEKDAGRMKAVNSAALPII 457

[Close]

BLAST of Sed0002222 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.3e-24
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLSA Q K  +  E  ERGLMYV+AWVNQ++AKSTMVDS A HNFM E EARRLN
Sbjct: 401 MGALKFLSALQKKAEEVKEPLERGLMYVEAWVNQKAAKSTMVDSGATHNFMTETEARRLN 460

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L WD+D GKMKA+N A LPI+
Sbjct: 461 LXWDKDPGKMKAVNSAALPIM 481

[Close]

BLAST of Sed0002222 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ E EA+RLN
Sbjct: 441 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEIEAKRLN 500

Query: 61  LQWDRDSGKMKAINLAVLPILIVELNTECSL 92
           L+W++D+G+MKA+N A LPI+ +E  T  +L
Sbjct: 501 LRWEKDAGRMKAVNSAALPIIGLEKRTMITL 531

[Close]

BLAST of Sed0002222 vs. ExPASy TrEMBL
Match: A0A5A7UZE9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003130 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+N++  KSTMVDS A HNF+IEAEA+RLN
Sbjct: 407 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINEKPTKSTMVDSGATHNFIIEAEAKRLN 466

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L+W++D+G+MKA+N A LPI+
Sbjct: 467 LRWEKDAGRMKAVNSAALPII 487

[Close]

BLAST of Sed0002222 vs. ExPASy TrEMBL
Match: A0A5A7UD54 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002510 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 8.1e-23
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+S KSTMVDS A HNF+ E EA+RLN
Sbjct: 292 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKSTKSTMVDSGATHNFITEVEAKRLN 351

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L+W++D+G+MKA+N A LPI+
Sbjct: 352 LRWEKDAGRMKAVNSAALPII 372

[Close]

BLAST of Sed0002222 vs. ExPASy TrEMBL
Match: A0A5D3DVV7 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00030 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLN 60
           MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ EAEA+RLN
Sbjct: 353 MGALKFLSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVDSGATHNFITEAEAKRLN 412

Query: 61  LQWDRDSGKMKAINLAVLPIL 82
           L W++D+G+MKA+N A LPI+
Sbjct: 413 LPWEKDAGRMKAVNSAALPII 433

The following BLAST results are available for this feature:

BLAST of Sed0002222 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	8.8e-24	71.60	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0060480.1	1.3e-22	64.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0060662.1	1.3e-22	59.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0051481.1	1.7e-22	64.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066677.1	3.7e-22	64.20	uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0002222 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0002222 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ6	4.3e-24	71.60	uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7UXR6	6.2e-23	59.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7UZE9	6.2e-23	64.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7UD54	8.1e-23	64.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5D3DVV7	1.8e-22	64.20	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Sed0002222 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002222.1	Sed0002222.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity