Sed0002205 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAGAAAGTAGGCCAACGCCCAACGCACAAACACGCATCCCACATCGCTTAAATTTCCCATTTCCCCCACAACTGTCTTCTCCTCAACCCCCCCTTTCTATATAAACCCTTCTTCTCCACTCCCCTCTCTCCCCATCTCCGGCGACGCCCACTCCGCCGGCATCCATGGCAGACGCCTTCCTCCGATCCCTCCACCACGGCTGTATCGCCGGCTGCGACGCCGACATCGCCCGCCGTCCCTACCACAAGAACTGCGGCTGCGCTCTCCACGGTCGAGCCAGCAGCCGCTGCTCGCACGCCGTCTCGAAGCAAAGCACCGTCTCGTATCCGATTCGGCGAGCCTGGAGTGAGAGCTGCCTGGCTATGGCTTCTGATAATTCCGGTTCTTCCTCTTCCTCGTCTTCGCCCTAGGTTTGGATCTAATTGAAGATGAGATCTCAGTATTCTGATTCTTTGTTATTCTTTTTACTTGGTGGAATTTAGTGAGTGATGCAAATTGCTTGGCTGTGTTCTTCTGTTCTGATTTTTTTTGTCAATGGAATGGATGTGGTTTCTGTAATTCGATGAAGTTGATTCCTGTTTCATAATCGTTTCATCTGTTTCACTGAAATGGCGATTGGTTTTTGAATTTGATGTTTGAACTTTCTGGATCAAGTTCGCAGTGCGAAATTCACTGATTGTATTTCGATTTCGAAGAGAGAGTTGATTCATGCTAATTTTCCAAGTTCAATTTTGAGGGATCCTTTAACTAATACCAAATTTGAATTTG AAGAAAGTAGGCCAACGCCCAACGCACAAACACGCATCCCACATCGCTTAAATTTCCCATTTCCCCCACAACTGTCTTCTCCTCAACCCCCCCTTTCTATATAAACCCTTCTTCTCCACTCCCCTCTCTCCCCATCTCCGGCGACGCCCACTCCGCCGGCATCCATGGCAGACGCCTTCCTCCGATCCCTCCACCACGGCTGTATCGCCGGCTGCGACGCCGACATCGCCCGCCGTCCCTACCACAAGAACTGCGGCTGCGCTCTCCACGGTCGAGCCAGCAGCCGCTGCTCGCACGCCGTCTCGAAGCAAAGCACCGTCTCGTATCCGATTCGGCGAGCCTGGAGTGAGAGCTGCCTGGCTATGGCTTCTGATAATTCCGGTTCTTCCTCTTCCTCGTCTTCGCCCTAGGTTTGGATCTAATTGAAGATGAGATCTCAGTATTCTGATTCTTTGTTATTCTTTTTACTTGGTGGAATTTAGTGAGTGATGCAAATTGCTTGGCTGTGTTCTTCTGTTCTGATTTTTTTTGTCAATGGAATGGATGTGGTTTCTGTAATTCGATGAAGTTGATTCCTGTTTCATAATCGTTTCATCTGTTTCACTGAAATGGCGATTGGTTTTTGAATTTGATGTTTGAACTTTCTGGATCAAGTTCGCAGTGCGAAATTCACTGATTGTATTTCGATTTCGAAGAGAGAGTTGATTCATGCTAATTTTCCAAGTTCAATTTTGAGGGATCCTTTAACTAATACCAAATTTGAATTTG ATGGCAGACGCCTTCCTCCGATCCCTCCACCACGGCTGTATCGCCGGCTGCGACGCCGACATCGCCCGCCGTCCCTACCACAAGAACTGCGGCTGCGCTCTCCACGGTCGAGCCAGCAGCCGCTGCTCGCACGCCGTCTCGAAGCAAAGCACCGTCTCGTATCCGATTCGGCGAGCCTGGAGTGAGAGCTGCCTGGCTATGGCTTCTGATAATTCCGGTTCTTCCTCTTCCTCGTCTTCGCCCTAG MADAFLRSLHHGCIAGCDADIARRPYHKNCGCALHGRASSRCSHAVSKQSTVSYPIRRAWSESCLAMASDNSGSSSSSSSP Homology
BLAST of Sed0002205 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23 Identity = 61/82 (74.39%), Postives = 68/82 (82.93%), Query Frame = 0
BLAST of Sed0002205 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]) HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0
BLAST of Sed0002205 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus]) HSP 1 Score: 102.1 bits (253), Expect = 2.4e-18 Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0
BLAST of Sed0002205 vs. NCBI nr
Match: XP_007013703.2 (PREDICTED: uncharacterized protein LOC18588916 [Theobroma cacao]) HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17 Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Sed0002205 vs. NCBI nr
Match: EOY31322.1 (Uncharacterized protein TCM_038276 [Theobroma cacao]) HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17 Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Sed0002205 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 7.2e-21 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0
BLAST of Sed0002205 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18 Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 0
BLAST of Sed0002205 vs. ExPASy TrEMBL
Match: A0A061GQ94 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038276 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 7.5e-18 Identity = 49/78 (62.82%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Sed0002205 vs. ExPASy TrEMBL
Match: A0A1R3G2H0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29274 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17 Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0
BLAST of Sed0002205 vs. ExPASy TrEMBL
Match: A0A6P5ZAR1 (uncharacterized protein LOC111299002 OS=Durio zibethinus OX=66656 GN=LOC111299002 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17 Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = 0
BLAST of Sed0002205 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 68.2 bits (165), Expect = 3.5e-12 Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 0
BLAST of Sed0002205 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.4 bits (163), Expect = 6.0e-12 Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|