Sed0002192 (gene) Chayote v1

Overview
NameSed0002192
Typegene
OrganismSechium edule (Chayote v1)
DescriptionNAC domain-containing protein
LocationLG02: 44249189 .. 44249987 (+)
RNA-Seq ExpressionSed0002192
SyntenySed0002192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAAATCATAATGTACCGTCAGTACGGCATCGTCTTCGCTCCGACCGACGAGGAACTGTTCGAGCTCTATCTTTATCCGAAGATTGCTGAGGATTACAATGGTTCATTTACTCTACCCATGGTTGACCTCTACACCCAAGAACCTTCTCTCCTATGGCAACCATTTGGAGGGATTGATGGTCAAGACTTCTTTTGTTTCACCACACTCAACAAGAAGAAATCGCGTATCGTCCGAAAGGTTGCCTCCAACGGCGCTACTTGGAGCGGTGAAAACAAAGCAACCCGAGTATTTTCCGAGGCTATCGGTGCCTTTATCGGTAGTGTCAAACGCTTTCATTACGAGAATCCTAAACTCAAAGGTAGCATCGAGGATTGTTCTTGGACCATGTACGAGTACACTCTCGATCCGCCTTTGTACCGAAAGGAAAGCACATGATTCGTATGTACTTTGCAAGATTCGAAAAAGAATTGTGAAAGCAGTGAGGAAAGGAGTTCCAACATTTGTACAACCATTGGCTTCTTGGCCGCCTACAGCATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCCCGGCCTACAACATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCTCGGCCTACGACATCGATGGAAGTATACGACCAGAATCACCCCATTCCAGCCGAGATGGAGAATTACGACCCAAATATGACATTTACTGAGGATGAAATTAGACAACTTCTAGTTCATATGGATTTGAAACCGGTTGTGCAGGAGAATCGTGTACCACCATCCAATTTGAAGTAA

mRNA sequence

ATGGATCAAATCATAATGTACCGTCAGTACGGCATCGTCTTCGCTCCGACCGACGAGGAACTGTTCGAGCTCTATCTTTATCCGAAGATTGCTGAGGATTACAATGGTTCATTTACTCTACCCATGGTTGACCTCTACACCCAAGAACCTTCTCTCCTATGGCAACCATTTGGAGGGATTGATGGTCAAGACTTCTTTTGTTTCACCACACTCAACAAGAAGAAATCGCGTATCGTCCGAAAGGTTGCCTCCAACGGCGCTACTTGGAGCGTGTCAAACGCTTTCATTACGAGAATCCTAAACTCAAAGGTAGCATCGAGGATTGTTCTTGGACCATGTACGAGTACACTCTCGATCCGCCTTTGTACCGAAAGGAAAGCACATGATTCGTATGTACTTTGCAAGATTCGAAAAAGAATTGTGAAAGCAGTGAGGAAAGGAGTTCCAACATTTGTACAACCATTGGCTTCTTGGCCGCCTACAGCATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCCCGGCCTACAACATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCTCGGCCTACGACATCGATGGAAGTATACGACCAGAATCACCCCATTCCAGCCGAGATGGAGAATTACGACCCAAATATGACATTTACTGAGGATGAAATTAGACAACTTCTAGTTCATATGGATTTGAAACCGGTTGTGCAGGAGAATCGTGTACCACCATCCAATTTGAAGTAA

Coding sequence (CDS)

ATGGATCAAATCATAATGTACCGTCAGTACGGCATCGTCTTCGCTCCGACCGACGAGGAACTGTTCGAGCTCTATCTTTATCCGAAGATTGCTGAGGATTACAATGGTTCATTTACTCTACCCATGGTTGACCTCTACACCCAAGAACCTTCTCTCCTATGGCAACCATTTGGAGGGATTGATGGTCAAGACTTCTTTTGTTTCACCACACTCAACAAGAAGAAATCGCGTATCGTCCGAAAGGTTGCCTCCAACGGCGCTACTTGGAGCGTGTCAAACGCTTTCATTACGAGAATCCTAAACTCAAAGGTAGCATCGAGGATTGTTCTTGGACCATGTACGAGTACACTCTCGATCCGCCTTTGTACCGAAAGGAAAGCACATGATTCGTATGTACTTTGCAAGATTCGAAAAAGAATTGTGAAAGCAGTGAGGAAAGGAGTTCCAACATTTGTACAACCATTGGCTTCTTGGCCGCCTACAGCATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCCCGGCCTACAACATCAGTTCCAGCACCAACACAAACATTGGCTTCTTCTCGGCCTACGACATCGATGGAAGTATACGACCAGAATCACCCCATTCCAGCCGAGATGGAGAATTACGACCCAAATATGACATTTACTGAGGATGAAATTAGACAACTTCTAGTTCATATGGATTTGAAACCGGTTGTGCAGGAGAATCGTGTACCACCATCCAATTTGAAGTAA

Protein sequence

MDQIIMYRQYGIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTTLNKKKSRIVRKVASNGATWSVSNAFITRILNSKVASRIVLGPCTSTLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLASWPPTASVPAPTQTLASSRPTTSVPAPTQTLASSRPTTSMEVYDQNHPIPAEMENYDPNMTFTEDEIRQLLVHMDLKPVVQENRVPPSNLK
Homology
BLAST of Sed0002192 vs. NCBI nr
Match: XP_038880323.1 (NAC domain-containing protein 96-like [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-25
Identity = 89/255 (34.90%), Postives = 130/255 (50.98%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G  F+PTDEEL   YL+ KI  D+     L ++DLY +EPS +WQ  GGIDGQD + FT 
Sbjct: 10  GFTFSPTDEELLSFYLFHKIVGDFIPPIVLQVIDLYNEEPSQIWQRCGGIDGQDIYFFTN 69

Query: 71  LNKKKSRIVRKVASNGATWS---VSNAFITRILNSKVA---------SRIVLGPCTS--- 130
           L KKKSR++RKV SNGATWS    +N   + I N+ +          S++ L    S   
Sbjct: 70  LKKKKSRVIRKVGSNGATWSGENKANMVFSSINNALIGSVKRFHYENSKVKLNDNHSWIM 129

Query: 131 ---TLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLASWPPTASVPAPTQTLA 190
              TL      +   HDS+VLCK+R +I+K  ++ + T +Q   S+ P   +P  T+   
Sbjct: 130 YEYTLHPTFVPKGVVHDSFVLCKLRNKILKKEKRALSTAIQ--TSFFPNWPIPTATRMKI 189

Query: 191 SSRPTTSVPAPTQTLASSRPTTSMEVYDQNHPIPAEMENYDPNMTFTEDEIRQLLVHMDL 247
              P      P +     +    +E       I  E +       FTED+I+QL+   +L
Sbjct: 190 HDDPN-----PKRRRLEEQVVGRLENELCIDQINFENQFCVNTKRFTEDDIQQLMHGYNL 249

BLAST of Sed0002192 vs. NCBI nr
Match: KGN65836.2 (hypothetical protein Csa_019715 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-23
Identity = 70/173 (40.46%), Postives = 96/173 (55.49%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G +F PT+EEL   YLY K+         LP++DLYTQEPS +WQ   G+D QD + FTT
Sbjct: 9   GYIFCPTEEELLGYYLYNKVLGGQTPPLVLPVIDLYTQEPSQIWQQCRGVDNQDIYFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRILNSKVASRIVLG--------------PCT-- 130
           L KKKSRI+RK+ SNG TWS  N    + + S +   ++LG               CT  
Sbjct: 69  LQKKKSRIIRKIGSNGGTWSGENK--PQQVFSSIIDNLLLGTMKRFRYEKSQVKEDCTWI 128

Query: 131 ---STLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLA--SWPPTA 163
               TL+  +  E   HDSYVLC IRK+IVK+ +  + +  +  +  +WP T+
Sbjct: 129 MYEYTLNPSIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRRASNNNWPMTS 179

BLAST of Sed0002192 vs. NCBI nr
Match: KAE8652623.1 (hypothetical protein Csa_013642 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-23
Identity = 69/171 (40.35%), Postives = 94/171 (54.97%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G VF PT+EEL   YLY K+  +      LP++DLYTQEPS +WQ   G+D +D + FTT
Sbjct: 9   GYVFCPTEEELLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWS------------VSNAFITRILNSKVASRIVLGPCT---- 130
           L KKKSRI+RKV SNG TWS            + N  +  +   +     V   CT    
Sbjct: 69  LQKKKSRIIRKVGSNGGTWSGENKPQQVFSSTIDNLLLGTMKRFRYEKSQVKEDCTWIMY 128

Query: 131 -STLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLA--SWPPTA 163
             TL+  +  E   HDSYVLC IRK+IVK+ +  + +  +  +  +WP T+
Sbjct: 129 EYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRQASNNNWPMTS 179

BLAST of Sed0002192 vs. NCBI nr
Match: XP_011660358.2 (uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-23
Identity = 69/171 (40.35%), Postives = 94/171 (54.97%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G VF PT+EEL   YLY K+  +      LP++DLYTQEPS +WQ   G+D +D + FTT
Sbjct: 9   GYVFCPTEEELLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWS------------VSNAFITRILNSKVASRIVLGPCT---- 130
           L KKKSRI+RKV SNG TWS            + N  +  +   +     V   CT    
Sbjct: 69  LQKKKSRIIRKVGSNGGTWSGENKPQQVFSSTIDNLLLGTMKRFRYEKSQVKEDCTWIMY 128

Query: 131 -STLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLA--SWPPTA 163
             TL+  +  E   HDSYVLC IRK+IVK+ +  + +  +  +  +WP T+
Sbjct: 129 EYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKRQASNNNWPMTS 179

BLAST of Sed0002192 vs. NCBI nr
Match: XP_008443570.1 (PREDICTED: NAC domain-containing protein 105-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.7e-22
Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G  F PTDEEL   YL+ K+  +      LP++DLY  EPS +WQ  GG+D QD + FTT
Sbjct: 9   GFTFCPTDEELLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRILNSKVASRIVLG-------------PCTS-- 130
           L KKKSRI+RKV SNG TWS  N    R + S     ++LG              CT   
Sbjct: 69  LKKKKSRIIRKVGSNGNTWSCENR--ARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDIN 128

Query: 131 ---------TLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLASWPPTASVPA 171
                    TL   +  +   HDSYVLC IRK+IVK+ +  + +  + ++S  PT S+  
Sbjct: 129 DCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQKIVMTSKKRQISSNWPTTSMHV 188

BLAST of Sed0002192 vs. ExPASy TrEMBL
Match: A0A1S3B8F1 (NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 8.1e-23
Identity = 73/184 (39.67%), Postives = 96/184 (52.17%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G  F PTDEEL   YL+ K+  +      LP++DLY  EPS +WQ  GG+D QD + FTT
Sbjct: 9   GFTFCPTDEELLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRILNSKVASRIVLG-------------PCTS-- 130
           L KKKSRI+RKV SNG TWS  N    R + S     ++LG              CT   
Sbjct: 69  LKKKKSRIIRKVGSNGNTWSCENR--ARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDIN 128

Query: 131 ---------TLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLASWPPTASVPA 171
                    TL   +  +   HDSYVLC IRK+IVK+ +  + +  + ++S  PT S+  
Sbjct: 129 DCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQKIVMTSKKRQISSNWPTTSMHV 188

BLAST of Sed0002192 vs. ExPASy TrEMBL
Match: A0A5A7UPM7 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00950 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 63/157 (40.13%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G  F PTDEEL   YLY KI  D+     LP++D+YTQEP  +W+  GG++G+D   FTT
Sbjct: 9   GYTFCPTDEELLTFYLYHKIMGDFIPPIMLPVIDIYTQEPPQIWEQCGGVEGRDVHFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRIL----------------NSKVASRIVLGPCT 130
           L K+KSRI+RKV SNGA WS   +  T++                 NSK+     +  C 
Sbjct: 69  LKKRKSRIIRKVGSNGAMWS-GESKATKVFSHDNTLVGTFKRFHYENSKMTK---VDDCN 128

Query: 131 S---------TLSIRLCTERKAHDSYVLCKIRKRIVK 143
           +         TL   L  +   HDS+VLC +RK+I+K
Sbjct: 129 NIYSWIMYEYTLQPNLVPQGVIHDSFVLCMLRKKILK 161

BLAST of Sed0002192 vs. ExPASy TrEMBL
Match: A0A5D3BHG6 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00980 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 63/157 (40.13%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G  F PTDEEL   YLY KI  D+     LP++D+YTQEP  +W+  GG++G+D   FTT
Sbjct: 9   GYTFCPTDEELLTFYLYHKIMGDFIPPIMLPVIDIYTQEPPQIWEQCGGVEGRDVHFFTT 68

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRIL----------------NSKVASRIVLGPCT 130
           L K+KSRI+RKV SNGA WS   +  T++                 NSK+     +  C 
Sbjct: 69  LKKRKSRIIRKVGSNGAMWS-GESKATKVFSHDNTLVGTFKRFHYENSKMTK---VDDCN 128

Query: 131 S---------TLSIRLCTERKAHDSYVLCKIRKRIVK 143
           +         TL   L  +   HDS+VLC +RK+I+K
Sbjct: 129 NIYSWIMYEYTLQPNLVPQGVIHDSFVLCMLRKKILK 161

BLAST of Sed0002192 vs. ExPASy TrEMBL
Match: A0A6J1F2C3 (NAC domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111441766 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 79/203 (38.92%), Postives = 104/203 (51.23%), Query Frame = 0

Query: 10  YGIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFT 69
           +G  FAPTDEEL   YL+ KI  D   S +LP++D+Y+ EP+++WQ  GG++ +D + FT
Sbjct: 8   FGYDFAPTDEELLIYYLFHKIVGDIVPSISLPVIDIYSHEPAMIWQQCGGMEDKDIYFFT 67

Query: 70  TLNKKKSRIVRKVASNGATW-----------SVSNAFITRI------------LNSKVAS 129
           TL KKKSRI+RKV  NG TW           S +NA I  I             N    S
Sbjct: 68  TLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYETSGGVNANDDDCS 127

Query: 130 RIVLGPCTSTLSIRLCTERKAHDSYVLCKIRKRIVKAVRKGVPTFVQPLASWPPTASVPA 189
            I+      TL   + T    HDSYV+C IRKRI+K VR  V + +Q     P   + P 
Sbjct: 128 WIM---HEYTLDPTVLTNGFVHDSYVVCLIRKRILKKVRNTVSSTIQA----PFVFNGPT 187

BLAST of Sed0002192 vs. ExPASy TrEMBL
Match: A0A6J1F881 (NAC domain-containing protein 96-like OS=Cucurbita moschata OX=3662 GN=LOC111441754 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0

Query: 11  GIVFAPTDEELFELYLYPKIAEDYNGSFTLPMVDLYTQEPSLLWQPFGGIDGQDFFCFTT 70
           G VF PTD+ELF+ YL+ KI  + +  + LP+VDLY++EPS+LWQ +GGID Q    FT 
Sbjct: 40  GYVFCPTDQELFQFYLHHKIVGN-DTPYVLPVVDLYSEEPSVLWQNYGGIDDQYLHVFTQ 99

Query: 71  LNKKKSRIVRKVASNGATWSVSNAFITRILNSKVASRIVLGP-----------------C 130
           L KKKSR++RKV SNG TWS  +A +   + S   + I+LG                  C
Sbjct: 100 LKKKKSRVIRKVGSNGGTWSGESAAVK--IFSSDDNHILLGTLKRFHYENRKVEKSNENC 159

Query: 131 T-----STLSIRLCTERKAHDSYVLCKIRKRIV 142
           +      T++  L      HD +V CKIR +I+
Sbjct: 160 SWIMHEYTINPDLVPNGNVHDRFVFCKIRHKIL 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880323.18.0e-2534.90NAC domain-containing protein 96-like [Benincasa hispida][more]
KGN65836.21.2e-2340.46hypothetical protein Csa_019715 [Cucumis sativus][more]
KAE8652623.11.2e-2340.35hypothetical protein Csa_013642 [Cucumis sativus][more]
XP_011660358.21.2e-2340.35uncharacterized protein LOC105436381 [Cucumis sativus][more]
XP_008443570.11.7e-2239.67PREDICTED: NAC domain-containing protein 105-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3B8F18.1e-2339.67NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 P... [more]
A0A5A7UPM74.4e-2140.13NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A5D3BHG64.4e-2140.13NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1F2C31.3e-2038.92NAC domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111441... [more]
A0A6J1F8812.9e-2041.18NAC domain-containing protein 96-like OS=Cucurbita moschata OX=3662 GN=LOC111441... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036093NAC domain superfamilyGENE3D2.170.150.80NAC domaincoord: 17..108
e-value: 1.5E-6
score: 30.1
IPR036093NAC domain superfamilySUPERFAMILY101941NAC domaincoord: 8..90
IPR003441NAC domainPFAMPF02365NAMcoord: 10..90
e-value: 7.6E-8
score: 33.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..195
NoneNo IPR availablePANTHERPTHR31989:SF371SUBFAMILY NOT NAMEDcoord: 10..91
NoneNo IPR availablePANTHERPTHR31989NAC DOMAIN-CONTAINING PROTEIN 82-RELATEDcoord: 10..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002192.1Sed0002192.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding