Sed0002185 (gene) Chayote v1

Overview
NameSed0002185
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like protein
LocationLG14: 16192366 .. 16192993 (-)
RNA-Seq ExpressionSed0002185
SyntenySed0002185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGAACCCTAGGTTCAAAGCTTTTCTACACACAAATCTCTCAACTTCAAACCAAAGCTTCTTTTGTTTTCTCTTCTCTCTTTCGGAAAATATACATAAATAATGAAGACAACTCTAAGGCTATCTGGTGTTTTCATTCTTTTCTTAGTTTTATGTTTAAATCATGAGAGTATTTACGTAGAATGCCGGCATCTGAAATCATCGAAATGCAAATGCTCGAAATTGGTCTCTCCACCAGCAGTTAATCTCGGTGCGAAAAAGACCGCCACCGGGGACGTGATTTTTGCTGGAAATCGTCAACAGTTTAAGACAAGCAAAGCCGAACAGCCTCAAGACTTTCGTCCCACATCGCCCGGGCACAGTCCTGGAGTTGGCCACCATATCAACAACTGAAAAGAAGCTTCTGATGATTCTGTTATCACTGTTTAATTTCACATCCTGCATTCCGTTGTTTTCTCTCTCTGAAGGTTAAAAAAATATGCATTCCCATGTAAAGTTGTGACTTAAAGATCTATCTTTTTCATAAACGGTAATTATCCGTGTTATATTCTTTACTAAATTGTAATTTAATTGTTCATTATGCGCCAATTTTGGAGGTCGCTATCTTGATTAAGAATCAAAAAAAGGG

mRNA sequence

ATAGAACCCTAGGTTCAAAGCTTTTCTACACACAAATCTCTCAACTTCAAACCAAAGCTTCTTTTGTTTTCTCTTCTCTCTTTCGGAAAATATACATAAATAATGAAGACAACTCTAAGGCTATCTGGTGTTTTCATTCTTTTCTTAGTTTTATGTTTAAATCATGAGAGTATTTACGTAGAATGCCGGCATCTGAAATCATCGAAATGCAAATGCTCGAAATTGGTCTCTCCACCAGCAGTTAATCTCGGTGCGAAAAAGACCGCCACCGGGGACGTGATTTTTGCTGGAAATCGTCAACAGTTTAAGACAAGCAAAGCCGAACAGCCTCAAGACTTTCGTCCCACATCGCCCGGGCACAGTCCTGGAGTTGGCCACCATATCAACAACTGAAAAGAAGCTTCTGATGATTCTGTTATCACTGTTTAATTTCACATCCTGCATTCCGTTGTTTTCTCTCTCTGAAGGTTAAAAAAATATGCATTCCCATGTAAAGTTGTGACTTAAAGATCTATCTTTTTCATAAACGGTAATTATCCGTGTTATATTCTTTACTAAATTGTAATTTAATTGTTCATTATGCGCCAATTTTGGAGGTCGCTATCTTGATTAAGAATCAAAAAAAGGG

Coding sequence (CDS)

ATGAAGACAACTCTAAGGCTATCTGGTGTTTTCATTCTTTTCTTAGTTTTATGTTTAAATCATGAGAGTATTTACGTAGAATGCCGGCATCTGAAATCATCGAAATGCAAATGCTCGAAATTGGTCTCTCCACCAGCAGTTAATCTCGGTGCGAAAAAGACCGCCACCGGGGACGTGATTTTTGCTGGAAATCGTCAACAGTTTAAGACAAGCAAAGCCGAACAGCCTCAAGACTTTCGTCCCACATCGCCCGGGCACAGTCCTGGAGTTGGCCACCATATCAACAACTGA

Protein sequence

MKTTLRLSGVFILFLVLCLNHESIYVECRHLKSSKCKCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
Homology
BLAST of Sed0002185 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 79/99 (79.80%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1  MKTTLRLSG--VFILFLVLCLNHESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATG 60
          MKTT RLSG  VFILFL+LCL+HE +YVECRHLKSS+C KC+K ++PPAVNLG KK   G
Sbjct: 1  MKTTQRLSGVCVFILFLILCLSHEVVYVECRHLKSSRCKKCTKFINPPAVNLGGKKADPG 60

Query: 61 DVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
          DV  AGNRQ+FKTSKAEQPQDFRPTSPGHSPGVGHHINN
Sbjct: 61 DVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHINN 99

BLAST of Sed0002185 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 61/101 (60.40%), Postives = 67/101 (66.34%), Query Frame = 0

Query: 1  MKTTLRLSGV-FILFLVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTA 60
          MK   R  GV  I+ LVLCL++E +YVECRHLKSS+   KCSK +  SPP      K   
Sbjct: 7  MKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKS-- 66

Query: 61 TGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
                AGN QQF T KAE PQDFRPTSPGHSPGVGHHINN
Sbjct: 67 ------AGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 99

BLAST of Sed0002185 vs. NCBI nr
Match: KAF7136307.1 (hypothetical protein RHSIM_Rhsim08G0102100 [Rhododendron simsii])

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-08
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 4  TLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGDVIFA 63
          ++   G  +L L L L +E++ V+ R LK   CK C +  S   +NL   +T TG  + +
Sbjct: 6  SMMCGGGALLVLALILCNEAVGVDARLLKHGACKRCHEKSSDNMMNLKKAETGTGKALSS 65

Query: 64 GNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
            +   +TSK E+ +DFRPT PGHSPGVGH +NN
Sbjct: 66 VTKPIVETSKMEKVEDFRPTQPGHSPGVGHSLNN 99

BLAST of Sed0002185 vs. NCBI nr
Match: KAF5736125.1 (hypothetical protein HS088_TW14G00260 [Tripterygium wilfordii])

HSP 1 Score: 67.4 bits (163), Expect = 7.7e-08
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 11 FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQ 70
          FIL L+LC  HE ++VE   RHLKS  C KC+       +N  AK    GD    G+ Q+
Sbjct: 10 FILVLILC--HEVVHVEGRGRHLKSHLCKKCNSRHHKNTLNAAAK---AGDHHLTGSAQE 69

Query: 71 FKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
           +TSK E    FRPT+PGHSPGVGH INN
Sbjct: 70 -RTSKVEYVDAFRPTAPGHSPGVGHSINN 92

BLAST of Sed0002185 vs. NCBI nr
Match: TKY55726.1 (hypothetical protein E2542_SST20145 [Spatholobus suberectus])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 0

Query: 1  MKTTLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGD- 60
          M+ T   +  F+LFL L L+H+ ++VE RHL+S  CK C+K    P  N  +     GD 
Sbjct: 1  MENTRLRNIAFVLFLFLILHHQVLFVEGRHLRSRLCKECAK----PQKNTMSVAAHAGDH 60

Query: 61 -VIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
           +   G  Q+       +  DFRPTSPGHSPGVGH INN
Sbjct: 61 GISDHGVHQEGSRRVEYEVDDFRPTSPGHSPGVGHSINN 95

BLAST of Sed0002185 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.1e-15
Identity = 51/86 (59.30%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 15 LVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTATGDVIFAGNRQQFKT 74
          +V  + +E +YVECRHLKSS+   KCSK +  SPP      K         AGN QQF T
Sbjct: 1  MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKS--------AGNPQQFTT 60

Query: 75 SKAEQPQDFRPTSPGHSPGVGHHINN 97
           KAE PQDFRPTSPGHSPGVGHHINN
Sbjct: 61 IKAELPQDFRPTSPGHSPGVGHHINN 78

BLAST of Sed0002185 vs. ExPASy TrEMBL
Match: A0A7J7CPU4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00260 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.7e-08
Identity = 45/89 (50.56%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 11 FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQ 70
          FIL L+LC  HE ++VE   RHLKS  C KC+       +N  AK    GD    G+ Q+
Sbjct: 10 FILVLILC--HEVVHVEGRGRHLKSHLCKKCNSRHHKNTLNAAAK---AGDHHLTGSAQE 69

Query: 71 FKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
           +TSK E    FRPT+PGHSPGVGH INN
Sbjct: 70 -RTSKVEYVDAFRPTAPGHSPGVGHSINN 92

BLAST of Sed0002185 vs. ExPASy TrEMBL
Match: A0A2C9URG2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.3e-08
Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 0

Query: 5  LRLSGVFILFLVLCLNHESIYVECRHLKSSKC--KCSKLVSPPAVNLG--AKKTATGDVI 64
          +R+ G  I  LVL L HE + VE RHLK  K   KC +L    ++N+    +K   G   
Sbjct: 4  IRVMGTCIFLLVLMLCHEVLVVEGRHLKPHKLCKKCFRLSDQNSLNVSEDTQKLLGG--- 63

Query: 65 FAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
                Q KTSK +   DFRPT PGHSPGVGH INN
Sbjct: 64 ------QEKTSKMDYVDDFRPTEPGHSPGVGHSINN 90

BLAST of Sed0002185 vs. ExPASy TrEMBL
Match: A0A061DGB8 (tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao OX=3641 GN=TCM_000584 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 48/94 (51.06%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 6  RLSGVFILFLVLCLNHE-SIY-VECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFA 65
          RL  V +L LVL L  E  +Y VE RHL+S  C KCS+     A     K T  G     
Sbjct: 5  RLKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSR---QRADQNTLKMTKNGSHSST 64

Query: 66 GNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN 97
          G+ Q+ +TSKAE   DFRPTSPGHSPGVGH I N
Sbjct: 65 GSGQE-QTSKAENIDDFRPTSPGHSPGVGHSIKN 94

BLAST of Sed0002185 vs. ExPASy TrEMBL
Match: W9R6N3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 21 HESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDF 80
          HE I VE RHLKS++  +CSK         G ++ +T    +A +R + +TSKAE   DF
Sbjct: 4  HEVINVEGRHLKSTRFRRCSK--------SGDQQHST----YAYSRPEVQTSKAEHVDDF 63

Query: 81 RPTSPGHSPGVGHHINN 97
          RPT+PGHSPGVGH INN
Sbjct: 64 RPTAPGHSPGVGHSINN 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595044.11.5e-3579.80hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647497.12.8e-1860.40hypothetical protein Csa_004238, partial [Cucumis sativus][more]
KAF7136307.12.0e-0841.49hypothetical protein RHSIM_Rhsim08G0102100 [Rhododendron simsii][more]
KAF5736125.17.7e-0850.56hypothetical protein HS088_TW14G00260 [Tripterygium wilfordii][more]
TKY55726.11.0e-0743.43hypothetical protein E2542_SST20145 [Spatholobus suberectus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB69.1e-1559.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1[more]
A0A7J7CPU43.7e-0850.56Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW14G00260 ... [more]
A0A2C9URG28.3e-0845.83Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=... [more]
A0A061DGB81.4e-0751.06tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ... [more]
W9R6N34.1e-0750.65Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008270 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..82
NoneNo IPR availablePANTHERPTHR33348:SF28PRECURSOR OF CEP7coord: 4..96
IPR033250C-terminally encoded peptidePANTHERPTHR33348PRECURSOR OF CEP5coord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002185.1Sed0002185.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050789 regulation of biological process
biological_process GO:0048364 root development
cellular_component GO:0110165 cellular anatomical entity