Sed0002109 (gene) Chayote v1

Overview


Name	Sed0002109
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nuclear transcription factor Y subunit B
Location	LG09: 36413865 .. 36414353 (+)
RNA-Seq Expression	Sed0002109
Synteny	Sed0002109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATAGCACAGGAAAATCCGAGAGAGTAGTCGAATTTCAGTTCGATTTCTCCACGGGTGGCGGCGGAGTTGGTGGCAGCACCGGTGGATCGAGTGAGGAAGCCGGTAGTGGAGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTTCCAATCGCAAACGTGGGGAGGATCATGAAGCACATTCTACCTTCAAACGCCAAAATCTCGAAAGAGGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCATAAGGAGAAGAGGAAGACTGTCAATGGTGATGATATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAAAGAGCTCAACAAAATAAGGGTTTTTGTCAAAATAATAGTGATAATCATGATGCAAGAGAGAGATATAATTGA

mRNA sequence

ATGGATGATAGCACAGGAAAATCCGAGAGAGTAGTCGAATTTCAGTTCGATTTCTCCACGGGTGGCGGCGGAGTTGGTGGCAGCACCGGTGGATCGAGTGAGGAAGCCGGTAGTGGAGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTTCCAATCGCAAACGTGGGGAGGATCATGAAGCACATTCTACCTTCAAACGCCAAAATCTCGAAAGAGGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCATAAGGAGAAGAGGAAGACTGTCAATGGTGATGATATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAAAGAGCTCAACAAAATAAGGGTTTTTGTCAAAATAATAGTGATAATCATGATGCAAGAGAGAGATATAATTGA

Coding sequence (CDS)

ATGGATGATAGCACAGGAAAATCCGAGAGAGTAGTCGAATTTCAGTTCGATTTCTCCACGGGTGGCGGCGGAGTTGGTGGCAGCACCGGTGGATCGAGTGAGGAAGCCGGTAGTGGAGGCGTCGGGATCGTAAAAGAGCAAGATCGGTTGCTTCCAATCGCAAACGTGGGGAGGATCATGAAGCACATTCTACCTTCAAACGCCAAAATCTCGAAAGAGGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCGGAGAAGTGCCATAAGGAGAAGAGGAAGACTGTCAATGGTGATGATATTTGCTGTGCCTTGGCCACACTTGGATTTGATGATTATGCTGAGCCTTTGAGGAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAAAGAGCTCAACAAAATAAGGGTTTTTGTCAAAATAATAGTGATAATCATGATGCAAGAGAGAGATATAATTGA

Protein sequence

MDDSTGKSERVVEFQFDFSTGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDARERYN

Homology

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BLAST of Sed0002109 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 136/157 (86.62%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFSTGGG-GVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER+VEF++DF+ GGG GVGGSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHD 157
           DDYAEPLRRYLVRYREMEGERAQQNKG C NN  NHD
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCNNN--NHD 155

[Close]

BLAST of Sed0002109 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFST-GGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ER+VEF++DF+T GGGGVGGSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           DDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT--HDA 156

[Close]

BLAST of Sed0002109 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 3.6e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFST-GGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ER+VEF++DF+T GGGGVGGSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           DDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNA--HDA 156

[Close]

BLAST of Sed0002109 vs. NCBI nr
Match: XP_022953161.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 4.7e-66
Identity = 136/159 (85.53%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFSTGG--GGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGR 60
           MDD+T   ER+VEF++DF+TGG  GGVGGSTGGSSEEAGSG  G VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLG 120
           IMK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           FDDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT--HDA 157

[Close]

BLAST of Sed0002109 vs. NCBI nr
Match: KAG6575846.1 (Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 8.0e-66
Identity = 136/161 (84.47%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFST----GGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANV 60
           MDD+T   ER+VEF++DF+T    GGGGVGGSTGGSSEEAGSG  G VKEQDRLLPIANV
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANV 60

Query: 61  GRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALAT 120
           GRIMK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALAT
Sbjct: 61  GRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT 120

Query: 121 LGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           LGFDDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 LGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT--HDA 159

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BLAST of Sed0002109 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-42
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 43  IVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKR 102
           +VKEQDRLLPIANVGRIMK+ILP+NAK+SKEAKETMQECVSEFISFVTGEAS+KCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 103 KTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQN-KGFCQNNSDN 155
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG  +++ DN
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of Sed0002109 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.3e-38
Identity = 82/123 (66.67%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 19  STGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETM 78
           + GGGG G S G      G GG    KEQDR LPIANV RIMK  LP+NAKISKE+KET+
Sbjct: 31  AAGGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETV 90

Query: 79  QECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEG 138
           QECVSEFISFVTGEAS+KC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL RYRE EG
Sbjct: 91  QECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEG 150

Query: 139 ERA 142
           E+A
Sbjct: 151 EKA 153

[Close]

BLAST of Sed0002109 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 4.7e-37
Identity = 79/125 (63.20%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 19  STGGGG----VGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEA 78
           S GGGG     G   GG     G GG G V+EQDR LPIAN+ RIMK  +P+N KI+K+A
Sbjct: 7   SPGGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDA 66

Query: 79  KETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYR 138
           KET+QECVSEFISF+T EAS+KC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YR
Sbjct: 67  KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYR 126

Query: 139 EMEGE 140
           EMEG+
Sbjct: 127 EMEGD 131

[Close]

BLAST of Sed0002109 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.2e-37
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 29  TGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISF 88
           +GG S  AG G +   +EQDR LPIANV RIMK  LP+NAKISK+AKET+QECVSEFISF
Sbjct: 8   SGGPSNYAG-GELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 67

Query: 89  VTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERA 142
           +TGEAS+KC +EKRKT+NGDD+  A+ TLGF+DY +PL+ YL ++RE+EGERA
Sbjct: 68  ITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERA 119

[Close]

BLAST of Sed0002109 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-37
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 17  DFSTGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKE 76
           D  +GGG  G +  G S  +        +EQDR LPIANV RIMK  LP+NAKISK+AKE
Sbjct: 5   DRDSGGGQNGNNQNGQSSLS-------PREQDRFLPIANVSRIMKKALPANAKISKDAKE 64

Query: 77  TMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREM 136
           TMQECVSEFISFVTGEAS+KC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+RE+
Sbjct: 65  TMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 121

Query: 137 EGER 141
           EGER
Sbjct: 125 EGER 121

[Close]

BLAST of Sed0002109 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFST-GGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MDD+T   ER+VEF++DF+T GGGGVGGSTGGSSEEAGSG  G VKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           DDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNA--HDA 156

[Close]

BLAST of Sed0002109 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.3e-66
Identity = 136/159 (85.53%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFSTGG--GGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGR 60
           MDD+T   ER+VEF++DF+TGG  GGVGGSTGGSSEEAGSG  G VKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLG 120
           IMK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHDA 158
           FDDYAEPLRRYL+RYRE+EGERAQQNKG C NN+  HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNT--HDA 157

[Close]

BLAST of Sed0002109 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.5e-65
Identity = 132/157 (84.08%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFSTGG-GGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER VEF++DF+ GG  GVGGSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHD 157
           DDYAEPLRRYLVRYR+MEGERAQQNKG C NN++N++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNNNNNNN 157

[Close]

BLAST of Sed0002109 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.3e-65
Identity = 130/157 (82.80%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MDDSTGKSERVVEFQFDFSTGG-GGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRI 60
           MD++TG  ER +EF++DF+ GG  GVGGSTGGSSEEAG+G  G+VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGF 120
           MK ILP NAKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLVRYREMEGERAQQNKGFCQNNSDNHD 157
           DDYAEPLRRYLVRYR+MEGERAQQNKG C N+++N++
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNSNNNNN 157

[Close]

BLAST of Sed0002109 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.0e-63
Identity = 128/149 (85.91%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 9   ERVVEFQFDFSTGG-GGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSN 68
           ER VEF++DF+ GG  GVGGSTGGSSEEAG+G  G+VKEQDRLLPIANVGRIMK ILP N
Sbjct: 3   ERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILPPN 62

Query: 69  AKISKEAKETMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 128
           AKISKEAKETMQECVSEFISFVTGEAS+KCHKEKRKTVNGDDICCALATLGFDDYAEPLR
Sbjct: 63  AKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLR 122

Query: 129 RYLVRYREMEGERAQQNKGFCQNNSDNHD 157
           RYLVRYR+MEGERAQQNKG C NN++N++
Sbjct: 123 RYLVRYRDMEGERAQQNKGCCNNNNNNNN 151

[Close]

BLAST of Sed0002109 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 43  IVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCHKEKR 102
           +VKEQDRLLPIANVGRIMK+ILP+NAK+SKEAKETMQECVSEFISFVTGEAS+KCHKEKR
Sbjct: 48  MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107

Query: 103 KTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQN-KGFCQNNSDN 155
           KTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+   + KG  +++ DN
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSSPDN 160

[Close]

BLAST of Sed0002109 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 154.8 bits (390), Expect = 5.8e-38
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 17  DFSTGGGGVGGSTGGSSEEAGSGGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKE 76
           D  +GGG  G +  G S  +        +EQDR LPIANV RIMK  LP+NAKISK+AKE
Sbjct: 5   DRDSGGGQNGNNQNGQSSLS-------PREQDRFLPIANVSRIMKKALPANAKISKDAKE 64

Query: 77  TMQECVSEFISFVTGEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREM 136
           TMQECVSEFISFVTGEAS+KC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+RE+
Sbjct: 65  TMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 121

Query: 137 EGER 141
           EGER
Sbjct: 125 EGER 121

[Close]

BLAST of Sed0002109 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 72/102 (70.59%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 39  GGVGIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVTGEASEKCH 98
           GG    +EQDR LPIANV RIMK  LP+NAKISK+AKET+QECVSEFISF+TGEAS+KC 
Sbjct: 14  GGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQ 73

Query: 99  KEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGER 141
           +EKRKT+NGDD+  A+ TLGF+DY EPL+ YL +YRE+EGE+
Sbjct: 74  REKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115

[Close]

BLAST of Sed0002109 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-37
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 33  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVT 92
           S  AG GG   G V+EQDR LPIAN+ RIMK  LP N KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 93  GEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQN 152
            EAS+KC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

Query: 153 NSD 154
           N D
Sbjct: 126 NRD 128

[Close]

BLAST of Sed0002109 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-37
Identity = 78/123 (63.41%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 33  SEEAGSGGV--GIVKEQDRLLPIANVGRIMKHILPSNAKISKEAKETMQECVSEFISFVT 92
           S  AG GG   G V+EQDR LPIAN+ RIMK  LP N KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 93  GEASEKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGFCQN 152
            EAS+KC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

Query: 153 NSD 154
           N D
Sbjct: 126 NRD 128

The following BLAST results are available for this feature:

BLAST of Sed0002109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876756.1	2.1e-66	86.62	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]
XP_023549145.1	3.6e-66	86.08	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991512.1	3.6e-66	86.08	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_022953161.1	4.7e-66	85.53	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]	[more]
KAG6575846.1	8.0e-66	84.47	Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Sed0002109 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	2.9e-42	76.11	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q0J7P4	7.3e-38	66.67	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q60EQ4	4.7e-37	63.20	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q75IZ7	6.2e-37	67.26	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9FGJ3	8.1e-37	65.32	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Sed0002109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM11	1.7e-66	86.08	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	2.3e-66	85.53	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BT19	1.5e-65	84.08	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	7.3e-65	82.80	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	4.0e-63	85.91	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Sed0002109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	2.0e-43	76.11	nuclear factor Y, subunit B5	[more]
AT5G47640.1	5.8e-38	65.32	nuclear factor Y, subunit B2	[more]
AT4G14540.1	1.3e-37	70.59	nuclear factor Y, subunit B3	[more]
AT2G38880.2	2.2e-37	63.41	nuclear factor Y, subunit B1	[more]
AT2G38880.3	2.2e-37	63.41	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 97..115 score: 34.21 coord: 78..96 score: 52.03 coord: 116..134 score: 34.09
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..162
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 34..156
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..162 e-value: 8.9E-44 score: 150.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 47..156
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 50..114 e-value: 6.3E-27 score: 93.6
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 34..156
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 81..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002109.1	Sed0002109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding