Sed0002093 (gene) Chayote v1

Overview


Name	Sed0002093
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S1, chloroplastic
Location	LG09: 7758887 .. 7765548 (+)
RNA-Seq Expression	Sed0002093
Synteny	Sed0002093

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTTTTCCCCATCCCCGACCCCATTCCCGCCTAACCGGGTTAGGTGCGGGTCCAGAGAAAATAGACATCTCGATTACTTGGCTACCGGTGTAAGCTCCCCCGAGCTGGAGAGAGCGATGAACAGGTCTTTGGCGCATCAACTTTGTGGGTTGAAGAGTTACCCAATTTCTTCTCCGCAGCTTCCGATTTCGAGATGGAATCGATTTTCTCCGGCAGTTTCTTCAGCCGCATCTTCTTCGCCGACTCCCATTTCCAATGCGCAGACCAAAGATCGGCTTCAACTCAAGCACCTCTTCAAGGAAGCTTCTGAGCGCTGCTCTTCTACTCCCATGGATGGCGTCCCCTTCACTCTTGACCAATTTCATGCCGCTCTTGCTACTTACGACTTCGATTCTGCAATCGGAACCAAGGTACTTCGATCAATCTCCCGTTTCTGTTTGTTCTTTCAGTTGTAGGGTGAATGGATTTCTAGGTTTTACACTAATGGAAATCGTTGTTTTACGAGTTACTTGATACGTATGTGTTTTGTTTGTTCGTTTGAGGGTAGAGTTTCCCATTTAGGAGGTTATGATTATTGAGCACATTCCTTTGTTGAATTTTGAACATGGAACAAATGAAGTATGTGTATTTCTATGCTAGTTGGTTTTCGAAGAAATTTGTGTTAGACTGTTAGGTTGTGTTTGGATTTTTTTTTAGAAAGATGGGTAACCACGCCCGTCCCTAGGCCAGACACTGGGAGACATCGAAAGAGTAATGTCACAGCTAAGTCTCGAACCTTGGACCTTGAGGGGAGCATACTCTCAAAGCCTAAATCTTCAACTATTGTGCCACTCCTTAGGGACAGGTTGTGTTTGGATTTGATAGAATAAAGTGGAGTGGAGTGGAGTGGAAGAGTTAATGATAGTTGGGATAATTAACTACTCCAGGATTGGTGTTACTGTTAGCGATAGTTGGAGTAATTAACTACTCATTTGAGAATTTGTGTTAGTAGTGGTTGGAGTAATTAACTACTCTGTTTGAGAACTGGTGTTAGTTAGTTGAGTGATGAGTTTAATGTAAAGCTTGATAGAGGGTTTGATGTTTTTCGATGGGTCGTTAAGGGTGGCTGCTTACCACCAAATCCAAATAAGAGATTCTAGAAGAGTGGCTTTTTACTACTCTTCTCCTACCAAAAAACAAACACACCTTAGAATAAACCAGAGTGAAATTTCTGAAAGCTTTTCTTTCGTCCAGTGGTTGAAATATCCCAATACACTTAAAGTTATTAATATCAGCCATTCCCAATTTCAAGAAATGTTTAGCTTTACACTCTCTGAGTTTGGGAGTTTTAAATAACGCAAGTCGATTGCAGAAAAAATTGAGCTAAACATCGCTGAAAATTGTGAGTTACAGCTGCAACTATCTACCCTTTAGTCTAACCATCAACTTAGTTAGGTCCATGTTTCAAAAGGCTATTGAGGCTTACGCCTTGAGGTTCTAACTTTTAGCCTCGAGTCTTACGCCTCACACAAGAGAGGCTTACGCCTCGATGATAACACATTGAGGCTTAAAATTCCTACGCATCGTAGAATAACTAGAAGAATAGTCTTAATATTTCCCATTCTTATAATATAAAGGTTTGAACCATAACAATATAGATTTTCTCTTATGAATTCTTTCGTTAGAAAGTTACAATTGTTCAGAATTGTCAATTTATCATTTGTTGACTTATTTTCCTCTAGAATCTCTTTTTGGAGTTCTTTATTGTATTCACTATAGGTGCTTGGAGAATTCACTTATCTTACATTCATCATCGAAATTGTTTTTTAATCCAAAAAACTCAATCCTATTAGTGTTAGTGTTATGTTTTTGTATTGTTACGTAAGTATTATGTTTACACCAAATTTAGATTTTTTATAATATTTTTAAATATAATTGTGGCTTACACCTCGTACTGCCCTGAGGCTTACGTCTCGCCTTTTCAAGAGAAAAAGTCTCGAGATCGTCTTTAGCCTTTTAAAACATTGATAGGTAGCTTTTTAGATAATTTAGTTAGGACCAATGTTTCCATTATAGGATCATACAGCATATCACATCCAATATCTTCTCCGAATGTTAATTGACCGACTTTATGGCTCCATTGCAGTATCAGATAACTGGCACAAATCTATGTGTCATTGCTTTCCTTGATGTTTGCATATGCTTCATATGAACTGTGGATAACAGCTCTACTTCTCAGCAAGGGAAAATTAATGACTTCTACCATTGTTTTGTCTTCTCAGGTTAAAGGTACAGTATTTTGTACTGATGCTAATGGGGCACTAGTTGATACTGTTGCAAAGGGAACTGCATACTTACCCACCCAAGAGGCTTGCATTTTGAATATAACACATGTAGAAGAAGCAGGCATATATCCTGGTCTAGAAGAGGAGTTTGTAATTATTTCTGAACAGGAACCTGATGGTAGCTCAATTCTCAGCTTGAGAAGTGTCCAGCATGGCCTTGCGTGGGAACGATGCAGACAACTCCAAGCTGAGGATGTTGTTACCAAGGGTAAGGTGGGTTCTGCAAGTCATCTTGATCCTGTAATTTCAACTTTTCTTTGATATGTTGGGCAAGATCTTTCAATCTTTTTATATTAGTAACGATCATAGTGGCCTAGAGGTCAAATAAGGGTCTAGTAAATAATAAAAATGGGAATTTATCCTGAGCAAATTCTATCTCTTGTATTATATTTATAGCACAATTTTAAAAATAATTCATCTATAACACATAATTTTCTATTACTTATAGGACTCAACCAGTGATAGAACATAATTTTCTATCACCGATAGAACTCAACCAGTGATGAAACATAATTTTTTATTAGTGATAAAACTCAACCATTAATAGAATGAATAGAACTTAATTTGGATTTTTTCTGCTACAAATGAATTAGTTTTGATTTTGTGCTATAAATGAAAAATATTTGCCATTTTCTGTTGTACATGCAAAATTCCCTAATAAAATACTCATTAAAGATTATGGTTTCAATCCATGGTCACCTACTTAGAAATTAATTTCTTATGAGTTACCTTAACAATAAAATGTCGTGAGGTCCGATGGTTGTCCCATGAGAATGCTTGAGGCATGTATAAGCTGGTCCGAACATTCACAAATATTAAAAAAAAATCTTGTTTGCTAGTATTATTCATGTGACCATTGCCACAACCTTACTTAATGAAGAGATCTTTGAATGCAGGTTGTTGGTGCAAACAAAAAGGGAGTTGTTGTTCTTGTGGAAGGCCTTAGAGGCTTTGTTCCTTTCTCTCAGATAGCACCAGTATGTTCACTAAACTGGCTTTCTTTCTGCGGACTTCTGAGTCTCTTGCTGGCTTGAATTTTTAAACTTTTATTATCTTATAATGAGGTCGAGGTCATACTGAAACCCTTGAATTTTCTCGTTTTCGTGATTATATGATTAGATGTTCAAGTTCCTGACTTTACAGATCACTGCTCGATTTCTCCTCATACAATTCTGATAGGGTTGGGTCTTAGTAGAAATAGGAATAAGCAACTTACTCCCCAAGTAATTGCTAACATACCCTTATATTATTGGGAATTTGCCCTCTATAGCATATTTTTGGCTCTTCATTACAATTATAGCACATTTTTTAAAATAATTTCGTTCATAGCACATTTTGCCTAAAATTCCTATTCTACCATTATTAGACTTCTATCAATTCAACTGATAGATTTTAGACTTCTCTATCAGTTCAACAGATAGACTTCAATCGTTTTGTACCCCAAATAAATAAGTTTGGGAATTGTGTTATACATGAAATTATTTTGTTTTTTTATGATATACATGCAAAATCCCCTATATTATTCCTATTTCTACTAGGGCCCAACCCTATCAAATTCATGATGTGATCTTGAATTATTATCATTATTTGTCCTTTTTCATTCAATGCTCGTTACTGTTGTACATTATATTTTTCATCTGTTCCGTGCATCTCTTGTTCTTGTCGATTTATCAGAAATCAACTGCAGAGGAACTGCTTAATAAAGAGCTACATCTGAAGTTTGTGGAGGTTGACGAAAAACTATCTCGGCTAATCTTGAGTAACTGCAAGGCAATTGCCAATAGCCAGGCAGAGCTACGAGTTGGATCAGTAGTTACTGGTACTGTGCAGATTCTGAAACCGTATGGAGCCTTTATTGACATCGGTGGAATTAATGGACTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGGAACTGTTCTTCAACCTGGAGATACCCTAAAGGTATTCATTATCAATTGAGAGCTTGATGGGGAAGGTCTTAATTAGAGATGTCCAAAGGGTAGGCTAGGGAGTAGCTTCCTTGTCCCTGTCCTTGTCTCTACCACCAAATATAAATTTGTCCCTACAAAATTCATTATTTTTGTGGGGGTTGGTGGGATTCCCACAGGGAATTTTTCCCATTTATTATTTATTTATTTTCCTAATTTAAATATTTACATATATTTTCTTGATAAATTTTGCAAAAGTTAATTTTTCATTGAAAAGTATATATTAATTTTCAACTTGTTAGTTAATTGGTAAAGAAGAATACTCATTTCAATAAATATTTATACAAAAAATTAAATTGGTAAAATGGGAACATAAAATAAAATTTTACAAATATAAATATATAAATATATGTGTGTGTATATATATATATAAACAGGGCGGGGATCGAGAAAACAGAGATGAAAATACATTACTGTTCCCATTTAGCTTGCGAGGAATTTTTCTCCCCCGCTCATTCCTCCATTCTCCGCCTAAACAGGAAATCATTGCCCTGTTAGAGGCCGGTCCCTGCTGGAAAAATGAACATCTCTAGTTTTGATCAGTGTACAGCCATCTTGAACAAGTTGAAATAATTCTTGTGGTTGCAGGTCATGATTTTGAGTTATGACCGTGAGAGGGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCGTGGAGACATGATTCACAATCCAAAGGTTGTTTTTGAGAAGGTATTTCTCTTTACTAATATGATGTGCTTAGATTATTTTTTCAGAAGGTATTCCTTTTTCACTTCACTTATTGTTATAGCGTGCATGGATGGTTTTTTAGTTCTCTTCTTTTTTACTTATTACCCCTAGCATGCATAGAGTTCAGCCTTTATGTTATGAAATCGGAAACAAACAATCAAAGAAAACCGTAAAGAAACGTGAGAAAAAAAATACTCACAAATTTACATGGTTCATTAACGATGTGTTAGTTATATCCACGAGCAGAGGAGAGAACGATTTTATTAAGCAGTTACAAAATGTCGATCAAGTGGGGCTAGAGTTTTAAGTGAGTTTATATAGTGTACTCTCATAAAATCCTATTACAAAAGATGACCAAAATGCATAAAAGTCCAAATAGGAAAACATAAATCCATTACATATTTCGTCTAGGTTTCGAGGGCGTCGCCTCTGTACTGAATCTCGATTGACTGATAGACTCCTGACTAAGTAATCGTGGGCATCATAGTTCAAGGCCTATCTCAACACTGTATGTGTTGTGTAGGGGAGCTCTAAAATTTATGATTTTTCTTTTATCCGTCCATTTTCACCTCATAGATGCTTCGTTTTCTTGAATTTTTTTATGAACGAGAGTAGAAGTTCATTGGTTGATATTTCCAAGCCCACAAGTGAAGAGAATATTAGTTGATGTAATTAAATTTACCCAAACCTTCAACTTAAAACTTTTGAGTTGATTGATGATTTAACATTATTCAACATGATATCAGAGTAAGAGATCCTTGGTTCAAGTGTCTGTCGAATCATTTTCCACTTATAAGGCATTTCTCGAATTTTCAAGCCCACAAGTGAGGGGGAGTGTTGGTTGATATTTCCAAGCCCACGAGTGGGGGATTGTTGGTTGTTATAATTAAATTTACCCACCCAACTCAGCAGCTTAAGTTTTTGGATTGATCGGTAATTCAACATAATTAAAAAAAGTTTCTTATGTTTTGTGTACTATTGTAGGCAGATGAGATGGCTCAGACCTTCAGACAAAGATTAGAGCAAGCAGAAGAAATGGCTCGTGTCGGCCTTCTCGGATTTCAGCTCGAGGTACTTGGTGCATTTTCCTTTGATTTTTTAGTTAAAAAAAAGGGATTAGAAAATTTTGGAGCATGATTTAACTTTATCATCTCAATGCAGAGTGGATAATGAATTGACTCAGCTTTGATGGGGGTATCGCTTGGGCTTAAACCTGAATTGCCCGACGCGGTTGTAGATCGGATCTCACTGAAGTTTCCTCCACACAACACTAACAACTTGCTCCTCTCAAGTAAATAATTCCATATTTAATTTCTTTGGACTTTATTTTATAAAATGTTATGCCTTTCTAAAGTTATAGTATAGGGTATATAGGTTAACACTTACCGGAGTGGAGTCCGCAAGAGTTGACATATTTATGTAGGATTTAGTTTAAGGAGTTATATTGAGGAGTTATGTTGAGTAGTTAAAAATTGAGAGTTGTAGTCAAAAACTCGTTTGGATGTAGTTTTTGTGTAGAGAAGTTAGAGTCAAAACCTTGTTTGGATGTAGATTTAAAACGAATAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGTTTAGTTAAAAA

mRNA sequence

GAATTTTTTCCCCATCCCCGACCCCATTCCCGCCTAACCGGGTTAGGTGCGGGTCCAGAGAAAATAGACATCTCGATTACTTGGCTACCGGTGTAAGCTCCCCCGAGCTGGAGAGAGCGATGAACAGGTCTTTGGCGCATCAACTTTGTGGGTTGAAGAGTTACCCAATTTCTTCTCCGCAGCTTCCGATTTCGAGATGGAATCGATTTTCTCCGGCAGTTTCTTCAGCCGCATCTTCTTCGCCGACTCCCATTTCCAATGCGCAGACCAAAGATCGGCTTCAACTCAAGCACCTCTTCAAGGAAGCTTCTGAGCGCTGCTCTTCTACTCCCATGGATGGCGTCCCCTTCACTCTTGACCAATTTCATGCCGCTCTTGCTACTTACGACTTCGATTCTGCAATCGGAACCAAGGTTAAAGGTACAGTATTTTGTACTGATGCTAATGGGGCACTAGTTGATACTGTTGCAAAGGGAACTGCATACTTACCCACCCAAGAGGCTTGCATTTTGAATATAACACATGTAGAAGAAGCAGGCATATATCCTGGTCTAGAAGAGGAGTTTGTAATTATTTCTGAACAGGAACCTGATGGTAGCTCAATTCTCAGCTTGAGAAGTGTCCAGCATGGCCTTGCGTGGGAACGATGCAGACAACTCCAAGCTGAGGATGTTGTTACCAAGGGTAAGGTTGTTGGTGCAAACAAAAAGGGAGTTGTTGTTCTTGTGGAAGGCCTTAGAGGCTTTGTTCCTTTCTCTCAGATAGCACCAAAATCAACTGCAGAGGAACTGCTTAATAAAGAGCTACATCTGAAGTTTGTGGAGGTTGACGAAAAACTATCTCGGCTAATCTTGAGTAACTGCAAGGCAATTGCCAATAGCCAGGCAGAGCTACGAGTTGGATCAGTAGTTACTGGTACTGTGCAGATTCTGAAACCGTATGGAGCCTTTATTGACATCGGTGGAATTAATGGACTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGGAACTGTTCTTCAACCTGGAGATACCCTAAAGGTCATGATTTTGAGTTATGACCGTGAGAGGGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCGTGGAGACATGATTCACAATCCAAAGGTTGTTTTTGAGAAGGCAGATGAGATGGCTCAGACCTTCAGACAAAGATTAGAGCAAGCAGAAGAAATGGCTCGTGTCGGCCTTCTCGGATTTCAGCTCGAGAGTGGATAATGAATTGACTCAGCTTTGATGGGGGTATCGCTTGGGCTTAAACCTGAATTGCCCGACGCGGTTGTAGATCGGATCTCACTGAAGTTTCCTCCACACAACACTAACAACTTGCTCCTCTCAAGTAAATAATTCCATATTTAATTTCTTTGGACTTTATTTTATAAAATGTTATGCCTTTCTAAAGTTATAGTATAGGGTATATAGGTTAACACTTACCGGAGTGGAGTCCGCAAGAGTTGACATATTTATGTAGGATTTAGTTTAAGGAGTTATATTGAGGAGTTATGTTGAGTAGTTAAAAATTGAGAGTTGTAGTCAAAAACTCGTTTGGATGTAGTTTTTGTGTAGAGAAGTTAGAGTCAAAACCTTGTTTGGATGTAGATTTAAAACGAATAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGTTTAGTTAAAAA

Coding sequence (CDS)

ATGAACAGGTCTTTGGCGCATCAACTTTGTGGGTTGAAGAGTTACCCAATTTCTTCTCCGCAGCTTCCGATTTCGAGATGGAATCGATTTTCTCCGGCAGTTTCTTCAGCCGCATCTTCTTCGCCGACTCCCATTTCCAATGCGCAGACCAAAGATCGGCTTCAACTCAAGCACCTCTTCAAGGAAGCTTCTGAGCGCTGCTCTTCTACTCCCATGGATGGCGTCCCCTTCACTCTTGACCAATTTCATGCCGCTCTTGCTACTTACGACTTCGATTCTGCAATCGGAACCAAGGTTAAAGGTACAGTATTTTGTACTGATGCTAATGGGGCACTAGTTGATACTGTTGCAAAGGGAACTGCATACTTACCCACCCAAGAGGCTTGCATTTTGAATATAACACATGTAGAAGAAGCAGGCATATATCCTGGTCTAGAAGAGGAGTTTGTAATTATTTCTGAACAGGAACCTGATGGTAGCTCAATTCTCAGCTTGAGAAGTGTCCAGCATGGCCTTGCGTGGGAACGATGCAGACAACTCCAAGCTGAGGATGTTGTTACCAAGGGTAAGGTTGTTGGTGCAAACAAAAAGGGAGTTGTTGTTCTTGTGGAAGGCCTTAGAGGCTTTGTTCCTTTCTCTCAGATAGCACCAAAATCAACTGCAGAGGAACTGCTTAATAAAGAGCTACATCTGAAGTTTGTGGAGGTTGACGAAAAACTATCTCGGCTAATCTTGAGTAACTGCAAGGCAATTGCCAATAGCCAGGCAGAGCTACGAGTTGGATCAGTAGTTACTGGTACTGTGCAGATTCTGAAACCGTATGGAGCCTTTATTGACATCGGTGGAATTAATGGACTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGGAACTGTTCTTCAACCTGGAGATACCCTAAAGGTCATGATTTTGAGTTATGACCGTGAGAGGGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCGTGGAGACATGATTCACAATCCAAAGGTTGTTTTTGAGAAGGCAGATGAGATGGCTCAGACCTTCAGACAAAGATTAGAGCAAGCAGAAGAAATGGCTCGTGTCGGCCTTCTCGGATTTCAGCTCGAGAGTGGATAA

Protein sequence

MNRSLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEASERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYLPTQEACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCRQLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLEQAEEMARVGLLGFQLESG

Homology

[Close]

BLAST of Sed0002093 vs. NCBI nr
Match: XP_023006591.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 578.6 bits (1490), Expect = 4.1e-161
Identity = 307/377 (81.43%), Postives = 330/377 (87.53%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHA+LA YDF S IGTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE +GS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKLS
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLS 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RL+LSN KAIA+SQ+ELR+GSVVTG VQILKPYGAFIDIGG+NGLLHVSQISQNHISDI 
Sbjct: 243 RLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLES 379
           QAE MAR  LL FQ E+
Sbjct: 363 QAEAMARAELLEFQPEN 375

[Close]

BLAST of Sed0002093 vs. NCBI nr
Match: XP_023006590.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 577.8 bits (1488), Expect = 6.9e-161
Identity = 307/376 (81.65%), Postives = 329/376 (87.50%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHA+LA YDF S IGTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE +GS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKLS
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLS 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RL+LSN KAIA+SQ+ELR+GSVVTG VQILKPYGAFIDIGG+NGLLHVSQISQNHISDI 
Sbjct: 243 RLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLE 378
           QAE MAR  LL FQ E
Sbjct: 363 QAEAMARAELLEFQPE 374

[Close]

BLAST of Sed0002093 vs. NCBI nr
Match: XP_023547911.1 (30S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 575.1 bits (1481), Expect = 4.5e-160
Identity = 306/377 (81.17%), Postives = 328/377 (87.00%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FH ALA YDF S +GTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHDALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE DGS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KG VV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKLS
Sbjct: 183 AEDFVIKGMVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLS 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RLILSN KAIA+SQ+EL++GSVVTG VQILKPYGAFIDIGG+NGLLHVSQISQNHISDI 
Sbjct: 243 RLILSNSKAIASSQSELKIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLES 379
           QAE MAR  LL FQ E+
Sbjct: 363 QAEAMARAELLEFQPEN 375

[Close]

BLAST of Sed0002093 vs. NCBI nr
Match: XP_022958819.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 574.7 bits (1480), Expect = 5.9e-160
Identity = 305/377 (80.90%), Postives = 327/377 (86.74%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHAALA YDF S +GTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE DGS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKL 
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLY 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RLILSN KAI +SQ+ELR+GSVVTG VQILKPYGAF+DIGG+NGLLHVSQISQNHI DI 
Sbjct: 243 RLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLES 379
           QAE MAR  LL FQ E+
Sbjct: 363 QAEAMARAELLEFQPEN 375

[Close]

BLAST of Sed0002093 vs. NCBI nr
Match: XP_022958818.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 573.9 bits (1478), Expect = 1.0e-159
Identity = 305/376 (81.12%), Postives = 326/376 (86.70%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHAALA YDF S +GTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE DGS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKL 
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLY 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RLILSN KAI +SQ+ELR+GSVVTG VQILKPYGAF+DIGG+NGLLHVSQISQNHI DI 
Sbjct: 243 RLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLE 378
           QAE MAR  LL FQ E
Sbjct: 363 QAEAMARAELLEFQPE 374

[Close]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 8.3e-141
Identity = 269/383 (70.23%), Postives = 310/383 (80.94%), Query Frame = 0


Query: 4   SLAHQLC-GLKSYPISSPQL--PISRWN----RFSPAVSSAASSSPTPISNAQTKDRLQL 63
           SLA QL  GL+  P+S+  L  P S  +    RFSP VS+ A      +SNAQT++R +L
Sbjct: 3   SLAQQLAGGLRCPPLSNSNLSKPFSPKHTLKPRFSPIVSAVA------VSNAQTRERQKL 62

Query: 64  KHLFKEASERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTV 123
           K LF++A ERC + PM+GV FT+D FH AL  YDF+S +G++VKGTVFCTDANGALVD  
Sbjct: 63  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 122

Query: 124 AKGTAYLPTQEACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWER 183
           AK +AYLP  EACI  I +VEEAGI PG+ EEFVII E E D S ILSLR +Q+ LAWER
Sbjct: 123 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWER 182

Query: 184 CRQLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEV 243
           CRQLQAEDVV KGK+VGANK GVV LVEGLRGFVPFSQI+ KS+AEELL KE+ LKFVEV
Sbjct: 183 CRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEV 242

Query: 244 DEKLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNH 303
           DE+ SRL++SN KA+A+SQA+L +GSVVTGTVQ LKPYGAFIDIGGINGLLHVSQIS + 
Sbjct: 243 DEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 302

Query: 304 ISDIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTF 363
           +SDI TVLQPGDTLKVMILS+DRERGRVSLSTKKLEPT GDMI NPK+VFEKA+EMAQTF
Sbjct: 303 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 362

Query: 364 RQRLEQAEEMARVGLLGFQLESG 380
           RQR+ QAE MAR  +L FQ ESG
Sbjct: 363 RQRIAQAEAMARADMLRFQPESG 379

[Close]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 5.2e-135
Identity = 255/381 (66.93%), Postives = 305/381 (80.05%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPT-----PISNAQTKDRLQLKH 63
           SLA Q  GL+  P+SS      R ++  P  + +AS SPT      +S+ QTK+RL+LK 
Sbjct: 3   SLAQQFSGLRCSPLSSSSRLSRRASKNFPQ-NKSASVSPTIVAAVAMSSGQTKERLELKK 62

Query: 64  LFKEASERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAK 123
           +F++A ERC ++PM+GV FT+D F AA+  YDF+S IGT+VKGTVF TDANGALVD  AK
Sbjct: 63  MFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISAK 122

Query: 124 GTAYLPTQEACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCR 183
            +AYL  ++ACI  I HVEEAGI PG+ EEFVII E E D S +LSLR++Q+ LAWERCR
Sbjct: 123 SSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWERCR 182

Query: 184 QLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDE 243
           QLQAEDV+ K KV+GANK G+V LVEGLRGFVPFSQI+ K+ AEELL KE+ LKFVEVDE
Sbjct: 183 QLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEVDE 242

Query: 244 KLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHIS 303
           + ++L+LSN KA+A+SQA+L +GSVV G VQ LKPYGAFIDIGGINGLLHVSQIS + +S
Sbjct: 243 EQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRVS 302

Query: 304 DIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQ 363
           DI TVLQPGDTLKVMILS+DR+RGRVSLSTKKLEPT GDMI NPK+VFEKA+EMAQTFRQ
Sbjct: 303 DIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ 362

Query: 364 RLEQAEEMARVGLLGFQLESG 380
           R+ QAE MAR  +L FQ ESG
Sbjct: 363 RIAQAEAMARADMLRFQPESG 382

[Close]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 264.2 bits (674), Expect = 2.2e-69
Identity = 140/296 (47.30%), Postives = 193/296 (65.20%), Query Frame = 0


Query: 71  PMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYLPTQEACI 130
           P   + FT + F A L  YD+    G  V GTVF  +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 131 LNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCRQLQAEDVVTKGK 190
             +   EE  + P    EF I+S++  DG   LS+R +++  AWER RQLQ ED   + +
Sbjct: 67  NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 126

Query: 191 VVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLSRLILSNCKA 250
           V   N+ G +V +EGLRGF+P S I+ +   E+L+ +EL LKF+EVDE  +RL+LS+ +A
Sbjct: 127 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 186

Query: 251 IANSQA-ELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIGTVLQPGDT 310
           +   +   L VG VV G V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V    D 
Sbjct: 187 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 246

Query: 311 LKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLEQAEE 366
           +KVMI+  D ERGR+SLSTK+LEP  GDM+ NP+VV+EKA+EMA  +R++L+Q  E
Sbjct: 247 VKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQQAE 301

[Close]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.0e-66
Identity = 138/299 (46.15%), Postives = 194/299 (64.88%), Query Frame = 0


Query: 68  SSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYLPTQE 127
           S T    + FTL+ F A L  YD+  + G  V GTVF  ++ GAL+D  AK  AY+P QE
Sbjct: 3   SQTSTATIGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQE 62

Query: 128 ACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCRQLQAEDVVT 187
             I  +   EE  + P    EF I++++  DG   LS+R +++  AWER RQLQAED   
Sbjct: 63  MSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATV 122

Query: 188 KGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLSRLILSN 247
           +  V   N+ G +V +EGLRGF+P S I+ +   E+L+ ++L LKF+EVDE+ +RL+LS+
Sbjct: 123 RSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSH 182

Query: 248 CKAIANSQAE-LRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIGTVLQP 307
            +A+   +   L V  VV G+V+ +KPYGAFIDIGG++GLLH+S+IS +HI    +V   
Sbjct: 183 RRALVERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNV 242

Query: 308 GDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQ-RLEQAE 365
            D +KVMI+  D ERGR+SLSTK+LEP  G M+ +  +V E ADEMA+ FRQ RL +A+
Sbjct: 243 NDEIKVMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQ 300

[Close]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.0e-42
Identity = 101/283 (35.69%), Postives = 159/283 (56.18%), Query Frame = 0


Query: 80  DQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYLPTQEACILNITHVEEA 139
           D F  AL     DS  G  V+G V     +GA +D   K  A+LP +EA +  +  + EA
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EA 71

Query: 140 GIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCRQLQAEDVVTKGKVVGANKKGV 199
            +    E EF++I +Q  DG   +SLR++    AW R  +LQ      + KV G+NK GV
Sbjct: 72  HLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGV 131

Query: 200 VVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLSRLILSNCKAIANSQA-EL 259
              +EGLR F+P S +  K   + L  K L + F+EV+    +L+LS  +A   +   E+
Sbjct: 132 TADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREI 191

Query: 260 RVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIGTVLQPGDTLKVMILSYD 319
            VG ++ G V  LKP+G F+D+GG   LL ++QISQ  ++D+G + + GD ++ ++++ D
Sbjct: 192 EVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAID 251

Query: 320 RERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 362
             +GR+SLSTK LE   G+++ N   +   A + A+  R++LE
Sbjct: 252 NTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQLE 293

[Close]

BLAST of Sed0002093 vs. ExPASy TrEMBL
Match: A0A6J1KY62 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 2.0e-161
Identity = 307/377 (81.43%), Postives = 330/377 (87.53%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHA+LA YDF S IGTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE +GS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKLS
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLS 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RL+LSN KAIA+SQ+ELR+GSVVTG VQILKPYGAFIDIGG+NGLLHVSQISQNHISDI 
Sbjct: 243 RLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLES 379
           QAE MAR  LL FQ E+
Sbjct: 363 QAEAMARAELLEFQPEN 375

[Close]

BLAST of Sed0002093 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 3.3e-161
Identity = 307/376 (81.65%), Postives = 329/376 (87.50%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHA+LA YDF S IGTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE +GS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKLS
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLS 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RL+LSN KAIA+SQ+ELR+GSVVTG VQILKPYGAFIDIGG+NGLLHVSQISQNHISDI 
Sbjct: 243 RLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLE 378
           QAE MAR  LL FQ E
Sbjct: 363 QAEAMARAELLEFQPE 374

[Close]

BLAST of Sed0002093 vs. ExPASy TrEMBL
Match: A0A6J1H681 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 2.8e-160
Identity = 305/377 (80.90%), Postives = 327/377 (86.74%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHAALA YDF S +GTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE DGS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKL 
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLY 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RLILSN KAI +SQ+ELR+GSVVTG VQILKPYGAF+DIGG+NGLLHVSQISQNHI DI 
Sbjct: 243 RLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLES 379
           QAE MAR  LL FQ E+
Sbjct: 363 QAEAMARAELLEFQPEN 375

[Close]

BLAST of Sed0002093 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 573.9 bits (1478), Expect = 4.8e-160
Identity = 305/376 (81.12%), Postives = 326/376 (86.70%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPTPISNAQTKDRLQLKHLFKEA 63
           SLAHQLCGL+S P+SS   PIS   RFSP VS+AA  SPTPISNAQTK+RL+LK LFKEA
Sbjct: 3   SLAHQLCGLRSSPLSS--TPISTRKRFSPVVSAAA--SPTPISNAQTKERLKLKQLFKEA 62

Query: 64  SERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAKGTAYL 123
            ERC  TPMDGV FTL+ FHAALA YDF S +GTKVKGTVF TDANGALVDT AKGTAYL
Sbjct: 63  YERCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYL 122

Query: 124 PTQEACILNITHVEEAGIYPGLEEEFVII--SEQEPDGSSILSLRSVQHGLAWERCRQLQ 183
           PTQEACI NI HVEEAGIYPGLEEEFVII   EQE DGS ILSLRSVQ+GLAWERCRQLQ
Sbjct: 123 PTQEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQ 182

Query: 184 AEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDEKLS 243
           AED V KGKVV  NK GVVVLVEGL+GFVPFSQI+ KSTAEELLNKEL LKFVEVDEKL 
Sbjct: 183 AEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLY 242

Query: 244 RLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHISDIG 303
           RLILSN KAI +SQ+ELR+GSVVTG VQILKPYGAF+DIGG+NGLLHVSQISQNHI DI 
Sbjct: 243 RLILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIA 302

Query: 304 TVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQRLE 363
            VLQPGD LKVMILSYDR+RGR+SLSTKKLEP+ GDM+HNPK+VFEKADEMAQTFRQR+ 
Sbjct: 303 AVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIA 362

Query: 364 QAEEMARVGLLGFQLE 378
           QAE MAR  LL FQ E
Sbjct: 363 QAEAMARAELLEFQPE 374

[Close]

BLAST of Sed0002093 vs. ExPASy TrEMBL
Match: A0A6J1CCC9 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009918 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.5e-156
Identity = 302/390 (77.44%), Postives = 329/390 (84.36%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPI--SRWNRFS------------PAVSSAASSSPTPISNAQ 63
           SLAH++      P+SS +L +  S W RFS            P VSSAAS+  TPISNAQ
Sbjct: 3   SLAHRV------PLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAAST--TPISNAQ 62

Query: 64  TKDRLQLKHLFKEASERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDAN 123
           TK+RL+LK LFKEA ERC +TPMDGV FTL+ FHAAL+ YDF S +GTKVKGTVF TDA+
Sbjct: 63  TKERLKLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDAS 122

Query: 124 GALVDTVAKGTAYLPTQEACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQ 183
           GALVDT AKGTAYLP +EACIL I HVEEAGIYPGLEEEFVII+E E DGS ILSLR +Q
Sbjct: 123 GALVDTTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIAEHETDGSLILSLRRLQ 182

Query: 184 HGLAWERCRQLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKEL 243
           +GLAWERCRQLQAEDVV KGKVVGANK GV VLVEGLRGFVPFSQI+ KSTAEELL+KEL
Sbjct: 183 YGLAWERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDKEL 242

Query: 244 HLKFVEVDEKLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHV 303
            LKFVEVDE+LSRLILSNCKAIANSQAELR+GSVVTGTVQILK YGAFIDIGG+NGLLH+
Sbjct: 243 RLKFVEVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLLHI 302

Query: 304 SQISQNHISDIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKA 363
           SQIS NHISD+ TVL+PGDTLKVMILSYD ERGRVSLSTK LEPT GDMIHNPK+VFEKA
Sbjct: 303 SQISHNHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFEKA 362

Query: 364 DEMAQTFRQRLEQAEEMARVGLLGFQLESG 380
           DEMAQTFRQR+ QAE MARV LL  Q ESG
Sbjct: 363 DEMAQTFRQRIAQAEAMARVDLLRLQPESG 384

[Close]

BLAST of Sed0002093 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 482.3 bits (1240), Expect = 3.7e-136
Identity = 255/381 (66.93%), Postives = 305/381 (80.05%), Query Frame = 0


Query: 4   SLAHQLCGLKSYPISSPQLPISRWNRFSPAVSSAASSSPT-----PISNAQTKDRLQLKH 63
           SLA Q  GL+  P+SS      R ++  P  + +AS SPT      +S+ QTK+RL+LK 
Sbjct: 3   SLAQQFSGLRCSPLSSSSRLSRRASKNFPQ-NKSASVSPTIVAAVAMSSGQTKERLELKK 62

Query: 64  LFKEASERCSSTPMDGVPFTLDQFHAALATYDFDSAIGTKVKGTVFCTDANGALVDTVAK 123
           +F++A ERC ++PM+GV FT+D F AA+  YDF+S IGT+VKGTVF TDANGALVD  AK
Sbjct: 63  MFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISAK 122

Query: 124 GTAYLPTQEACILNITHVEEAGIYPGLEEEFVIISEQEPDGSSILSLRSVQHGLAWERCR 183
            +AYL  ++ACI  I HVEEAGI PG+ EEFVII E E D S +LSLR++Q+ LAWERCR
Sbjct: 123 SSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWERCR 182

Query: 184 QLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEELLNKELHLKFVEVDE 243
           QLQAEDV+ K KV+GANK G+V LVEGLRGFVPFSQI+ K+ AEELL KE+ LKFVEVDE
Sbjct: 183 QLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEVDE 242

Query: 244 KLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHIS 303
           + ++L+LSN KA+A+SQA+L +GSVV G VQ LKPYGAFIDIGGINGLLHVSQIS + +S
Sbjct: 243 EQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDRVS 302

Query: 304 DIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLEPTRGDMIHNPKVVFEKADEMAQTFRQ 363
           DI TVLQPGDTLKVMILS+DR+RGRVSLSTKKLEPT GDMI NPK+VFEKA+EMAQTFRQ
Sbjct: 303 DIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQ 362

Query: 364 RLEQAEEMARVGLLGFQLESG 380
           R+ QAE MAR  +L FQ ESG
Sbjct: 363 RIAQAEAMARADMLRFQPESG 382

[Close]

BLAST of Sed0002093 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-20
Identity = 63/208 (30.29%), Postives = 116/208 (55.77%), Query Frame = 0


Query: 159 GSSILSLRSVQHGLAWERCRQLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPK 218
           G  +LS R     +AW R RQ++  +   + K+   N  G++  +EGLR F+P  ++  K
Sbjct: 258 GRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKK 317

Query: 219 ----STAEELLNKELHLKFVEVDEKLSRLILSNCKAIANSQAELRVGSVVTGTVQILKPY 278
               +  +E + +   ++   ++E  + LILS  + +A  +  LR G+++ GTV  + PY
Sbjct: 318 VNTFTELKENVGRRFLVQITRLNEDKNDLILS--EKVAWEKLYLREGTLLEGTVVKILPY 377

Query: 279 GAFIDIG--GINGLLHVSQISQNHISDIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLE 338
           GA + +G    +GLLH+S I++  I  +  VLQ  +++KV+++       ++SLS   LE
Sbjct: 378 GAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLE 437

Query: 339 PTRGDMIHNPKVVFEKADEMAQTFRQRL 361
              G  I + + VF +A+EMA+ +R+++
Sbjct: 438 SEPGLFISDREKVFTEAEEMAKKYREKM 462

[Close]

BLAST of Sed0002093 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-18
Identity = 54/177 (30.51%), Postives = 99/177 (55.93%), Query Frame = 0


Query: 174 WERCRQLQAEDVVTKGKVVGANKKGVVVLVEGLRGFVPFSQIAPKSTAEE---------- 233
           W+  +         +G+V G N  G+++    L GF+P+ Q++P  + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 234 -LLNKELHLKFVEVDEKLSRLILSNCKAIANSQAE-LRVGSVVTGTVQILKPYGAFIDIG 293
            L+  +L +K V+ DE+  +LILS   A+    ++ + VG V  G V  ++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 294 ------GINGLLHVSQISQNHISDIGTVLQPGDTLKVMILSYDRERGRVSLSTKKLE 333
                  + GL+HVS++S +++ D+  VL+ GD ++V++ + D+E+ R++LS K+LE
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLE 273

[Close]

BLAST of Sed0002093 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-10
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 246 SNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGI-NGLLHVSQISQNHISDIGTVL 305
           S   A+ N   EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+ +V+
Sbjct: 123 SEMPAVKNE--ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVV 182

Query: 306 QPGDTLKVMILSYDRERGRVSLSTKK 331
             G  +KV ++  D E  R+SL+ ++
Sbjct: 183 TIGQEVKVRLVEADIESKRISLTMRE 206

[Close]

BLAST of Sed0002093 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-10
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 246 SNCKAIANSQAELRVGSVVTGTVQILKPYGAFIDIGGI-NGLLHVSQISQNHISDIGTVL 305
           S   A+ N   EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+ +V+
Sbjct: 123 SEMPAVKNE--ELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVV 182

Query: 306 QPGDTLKVMILSYDRERGRVSLSTKK 331
             G  +KV ++  D E  R+SL+ ++
Sbjct: 183 TIGQEVKVRLVEADIESKRISLTMRE 206

The following BLAST results are available for this feature:

BLAST of Sed0002093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006591.1	4.1e-161	81.43	30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima]	[more]
XP_023006590.1	6.9e-161	81.65	30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima]	[more]
XP_023547911.1	4.5e-160	81.17	30S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958819.1	5.9e-160	80.90	30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_022958818.1	1.0e-159	81.12	30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Sed0002093 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	8.3e-141	70.23	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	5.2e-135	66.93	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	2.2e-69	47.30	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	3.0e-66	46.15	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
O33698	3.0e-42	35.69	30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805...	[more]

BLAST of Sed0002093 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY62	2.0e-161	81.43	30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1L0J3	3.3e-161	81.65	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1H681	2.8e-160	80.90	30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A6J1H453	4.8e-160	81.12	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1CCC9	2.5e-156	77.44	30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia O...	[more]

BLAST of Sed0002093 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30510.1	3.7e-136	66.93	ribosomal protein S1	[more]
AT1G71720.1	2.6e-20	30.29	Nucleic acid-binding proteins superfamily	[more]
AT3G23700.1	1.4e-18	30.51	Nucleic acid-binding proteins superfamily	[more]
AT4G29060.1	3.1e-10	38.37	elongation factor Ts family protein	[more]
AT4G29060.2	3.1e-10	38.37	elongation factor Ts family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 346..366
None	No IPR available	GENE3D	2.40.50.140		coord: 79..178 e-value: 1.5E-5 score: 26.7 coord: 179..253 e-value: 2.1E-6 score: 29.4
None	No IPR available	GENE3D	2.40.50.140		coord: 254..334 e-value: 7.3E-23 score: 82.3
None	No IPR available	PANTHER	PTHR10724:SF11	30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC	coord: 4..379
None	No IPR available	PANTHER	PTHR10724	30S RIBOSOMAL PROTEIN S1	coord: 4..379
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 184..246 e-value: 1.12604E-16 score: 71.7211
None	No IPR available	CDD	cd05692	S1_RPS1_repeat_hs4	coord: 261..329 e-value: 2.04979E-27 score: 101.208
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 259..329 e-value: 5.3E-24 score: 95.7 coord: 94..166 e-value: 0.82 score: 18.7 coord: 181..248 e-value: 3.8E-5 score: 33.1
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 183..246 e-value: 5.8E-6 score: 26.6 coord: 258..329 e-value: 1.5E-18 score: 66.9
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 184..248 score: 12.529104
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 261..329 score: 21.506044
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 96..166 score: 8.974325
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 91..192
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 179..247
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 258..334

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002093.1	Sed0002093.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003676	nucleic acid binding