Sed0002087 (gene) Chayote v1

Overview


Name	Sed0002087
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG06: 41914046 .. 41916203 (+)
RNA-Seq Expression	Sed0002087
Synteny	Sed0002087

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTTGTTTTTTGTTGTATTCTTTTCTGTCTAATTCAAAGGAGAAAAAATGTGGCCAAAACAACTCAAAAGGAATTCATTTAAAGAATCTGTTAAGGCTGTTGAAGCTGATATACAACATGCAAATAACTTGTAAGTATTACACATAAGCTTCTTAATCCCATGAATATAGTAATGATCTAAGTATTATCAGCATAAACTCATGGTAACCTATTTCCATGGTAACAAATTAAACAAGTTTAAGGTTCGGTTAATTTGTATAACTTTTTGTGAATCTATTTCCTTATCATTTATCTAAACTCATGTCTTCTTCGCAAACTTGTTGGGCGGGGCGAATCTATAGGCATTTTAATACTATTTATTACATGCAAATAAGATGACGATCCTCCAAATTTTTAAATCGATTATTATTATTATTATTATATGAATAAGTAAACTCAAAATTATTTAATTTTGGCATTCCAAATTAAATTTTCTCGATACTAAGATTTGTTGGCCTCTTCAATCTTCTAACATCCAAATTAAGCTTGTCGTGGTTCATTATGCGAACGTTATTTGTGTAAGTCTCGTGATCATACACATACGTAAAAATGTTAAATTATTTTATTTTATTTTTTTTAAAGGAGAATTCATTCCAATTTTCCTTGCTTTTTAGGGGTGAGCTAAGGGTAGTGATCGAAAATCCCACGTTAGAAAGGTAAAGGGACTTTGTAACATTTATAAGATAAAAGATTACTCGTCTAGTTTTGAAATAAAATTTCATATTATTTAATACAAAATCGATAACTAATTAAAATCAATTATATATATTCGATCAAAAAATTGAAATTCAATCTAAAAATAGTGAATCTAAAGAGACGCCATCTTAAAAGGGCATGTTGAACCGTTGAGGATCTCATATTAAAATGGTAAGAAGATCAACGTTTATAGATAAACGAGCTACCTATTTTGTGGTTAAATTTCTCTGATTCTCAACTGTTACAAGCTGATATCATATACCTTACTTTACTTGTTACATTGACATCAAAGTTCTAAGATTTCTCGTGGGGTTTTTGCATTTGCAGGGCAGCCATTCTCCCAAGAGACTATGGTGGATTTTGCATTAAAATGAGCTTACATTACAGCCCATTTGCTCCATTTCTTCTTCATTTGATTGAATGGATGAATTTCAATTGCACAGATCCTCTTCCAAGTTTCTTAGGCCTTTTTCACATACTCTTGTACAAGGTGCTTCACCTCTCATCCCTTTTCGAGCTCGATTGTTTTCGTTCATCGAAAATCTAAAGCTCCCCCAATGTTTACTCAAGTATGCAGGTGTACGTCGATGAAAAACCGTTACTACCGCCAAGAGAAAGAAAAGCCACCCTCAGGGAGTTCTATGGTATGTACATCTCTGCTAACTTTTTTCTTTTTTAGAGATGGACATATTGGTATTCAACTGATTTTGTATCAAAATTTTGGCAGCTGTGATATACCCTTCGCTTAGGCAACTTCGAAACGAGCATATTGAATCGAAAGACGAGACTTTGTACATGAAGAGAATGGAAGATGATCAAAGAAAGTTGTGCAGTGATGATCTTCAGAAAGATAATGAATGTGGGATATGTATGGAGAACTACAAAGATGCTGTATTGCCAAATTGTGGCCATTCAATGTGCCTAAGTTGCTTCAAGGACTGGTAATCTCAACTCAATGGTCACTTTTAGCATCAAATTTTCTTCTCAACTTAAAGCTTGGTGTTGTACATTTTTCTTATCAATATTATTGGAAATTTTATTGTCAGGAGTGCGAGATCACGATCCTGTCCTTTTTGTCGTAATTGTCTATGCGGGCTGAGCGCCAGGGATCTGTGGGTTCTTACGAGCGACTCCGATGTCGTCGACTCAGAAACTCTTGCCATGGAAAATATATTACATTTCTACCTTTATGTTGAAAACTTGCCACTGTTTCAGCCAGACATTAGTATTGTTATTCCAGATTACATGTTGTGATCCATCAAGAAGAAAGATGTATGATCCAACGTGTTGGCTACCACTTGTATATAACTTCAACTGAGGGAGAAATTCTGGAAATATATAAAATTGGATCAGTAGGAGCTGATGTATGCTAATATCATTTGTACAAATTCACAAGATTGAAAGATATATATATAGAGAG

mRNA sequence

ATTTGTTGTTTTTTGTTGTATTCTTTTCTGTCTAATTCAAAGGAGAAAAAATGTGGCCAAAACAACTCAAAAGGAATTCATTTAAAGAATCTGTTAAGGCTGTTGAAGCTGATATACAACATGCAAATAACTTGGCAGCCATTCTCCCAAGAGACTATGGTGGATTTTGCATTAAAATGAGCTTACATTACAGCCCATTTGCTCCATTTCTTCTTCATTTGATTGAATGGATGAATTTCAATTGCACAGATCCTCTTCCAAGTTTCTTAGGCCTTTTTCACATACTCTTGTACAAGGTGTACGTCGATGAAAAACCGTTACTACCGCCAAGAGAAAGAAAAGCCACCCTCAGGGAGTTCTATGCTGTGATATACCCTTCGCTTAGGCAACTTCGAAACGAGCATATTGAATCGAAAGACGAGACTTTGTACATGAAGAGAATGGAAGATGATCAAAGAAAGTTGTGCAGTGATGATCTTCAGAAAGATAATGAATGTGGGATATGTATGGAGAACTACAAAGATGCTGTATTGCCAAATTGTGGCCATTCAATGTGCCTAAGTTGCTTCAAGGACTGGAGTGCGAGATCACGATCCTGTCCTTTTTGTCGTAATTGTCTATGCGGGCTGAGCGCCAGGGATCTGTGGGTTCTTACGAGCGACTCCGATGTCGTCGACTCAGAAACTCTTGCCATGGAAAATATATTACATTTCTACCTTTATGTTGAAAACTTGCCACTGTTTCAGCCAGACATTAGTATTGTTATTCCAGATTACATGTTGTGATCCATCAAGAAGAAAGATGTATGATCCAACGTGTTGGCTACCACTTGTATATAACTTCAACTGAGGGAGAAATTCTGGAAATATATAAAATTGGATCAGTAGGAGCTGATGTATGCTAATATCATTTGTACAAATTCACAAGATTGAAAGATATATATATAGAGAG

Coding sequence (CDS)

ATGTGGCCAAAACAACTCAAAAGGAATTCATTTAAAGAATCTGTTAAGGCTGTTGAAGCTGATATACAACATGCAAATAACTTGGCAGCCATTCTCCCAAGAGACTATGGTGGATTTTGCATTAAAATGAGCTTACATTACAGCCCATTTGCTCCATTTCTTCTTCATTTGATTGAATGGATGAATTTCAATTGCACAGATCCTCTTCCAAGTTTCTTAGGCCTTTTTCACATACTCTTGTACAAGGTGTACGTCGATGAAAAACCGTTACTACCGCCAAGAGAAAGAAAAGCCACCCTCAGGGAGTTCTATGCTGTGATATACCCTTCGCTTAGGCAACTTCGAAACGAGCATATTGAATCGAAAGACGAGACTTTGTACATGAAGAGAATGGAAGATGATCAAAGAAAGTTGTGCAGTGATGATCTTCAGAAAGATAATGAATGTGGGATATGTATGGAGAACTACAAAGATGCTGTATTGCCAAATTGTGGCCATTCAATGTGCCTAAGTTGCTTCAAGGACTGGAGTGCGAGATCACGATCCTGTCCTTTTTGTCGTAATTGTCTATGCGGGCTGAGCGCCAGGGATCTGTGGGTTCTTACGAGCGACTCCGATGTCGTCGACTCAGAAACTCTTGCCATGGAAAATATATTACATTTCTACCTTTATGTTGAAAACTTGCCACTGTTTCAGCCAGACATTAGTATTGTTATTCCAGATTACATGTTGTGA

Protein sequence

MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIESKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARSRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVIPDYML

Homology

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BLAST of Sed0002087 vs. NCBI nr
Match: XP_008446106.1 (PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 4.7e-110
Identity = 190/244 (77.87%), Postives = 220/244 (90.16%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWP+Q KRNSFKES+KAVEADI+HAN LAA+LPR+YGGFCI+M LHYSPFAPFLLH IEW
Sbjct: 1   MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+FNCTDP+PSFLGLFHILLYKVYVD KPL+ PRERKATL+EFYAVIYPSLRQL++  ++
Sbjct: 61  MDFNCTDPVPSFLGLFHILLYKVYVDGKPLVSPRERKATLKEFYAVIYPSLRQLQSGRVD 120

Query: 121 SKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 180
           SK+ET   K  ED+Q KL ++DLQ+D ECGICMEN +D VLPNCGHSMCL+CFKDWSARS
Sbjct: 121 SKEETSPRKITEDEQ-KLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLNCFKDWSARS 180

Query: 181 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVIP 240
           RSCPFCRNCL  LS RDLW+LTSD++++DSETLA EN+LHFYLY E+LPLFQPD++I IP
Sbjct: 181 RSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIP 240

Query: 241 DYML 245
           DYML
Sbjct: 241 DYML 243

[Close]

BLAST of Sed0002087 vs. NCBI nr
Match: XP_004135299.1 (E3 ubiquitin-protein ligase AIRP2 isoform X1 [Cucumis sativus])

HSP 1 Score: 406.8 bits (1044), Expect = 1.4e-109
Identity = 189/244 (77.46%), Postives = 219/244 (89.75%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWP+Q +RNSFKES+KAVEADI+HAN LAA+LPR+YGGFCI+M LHYSPFAPFLLH IEW
Sbjct: 1   MWPEQPERNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+FNCTDP+PSFLGLFHILLYKVYVD KPL+ PRERK TL+EFYAVIYPSLRQL++  +E
Sbjct: 61  MDFNCTDPVPSFLGLFHILLYKVYVDGKPLVSPRERKTTLKEFYAVIYPSLRQLQSGRVE 120

Query: 121 SKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 180
           SK+ET   K  ED+Q KL ++DLQ+D ECGICMEN +D VLPNCGHSMCLSCFKDW+ARS
Sbjct: 121 SKEETSSRKITEDEQ-KLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFKDWNARS 180

Query: 181 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVIP 240
           RSCPFCRNCL  LS RDLW+LTSD++++DSETLA EN+LHFYLY E+LPLFQPD++I IP
Sbjct: 181 RSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIP 240

Query: 241 DYML 245
           DYML
Sbjct: 241 DYML 243

[Close]

BLAST of Sed0002087 vs. NCBI nr
Match: XP_038893281.1 (E3 ubiquitin-protein ligase AIRP2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 404.1 bits (1037), Expect = 8.8e-109
Identity = 190/243 (78.19%), Postives = 214/243 (88.07%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWP+Q KRNSFKES+KAVEADI+HAN LAA+LPRDYGGFCI+M LHYSPFAPF LH IEW
Sbjct: 1   MWPEQPKRNSFKESLKAVEADIKHANTLAAMLPRDYGGFCIQMRLHYSPFAPFFLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+F+CTDPLPSFLGLFHILLYKVYVD KPL+ PRERKATL+EFYAVIYPSLRQL +  +E
Sbjct: 61  MDFSCTDPLPSFLGLFHILLYKVYVDGKPLVLPRERKATLKEFYAVIYPSLRQLHSGRVE 120

Query: 121 SKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 180
           SK ET   K  ED+Q  L ++DLQ+D ECGICMEN +D VLPNCGHSMCLSCF+DWSARS
Sbjct: 121 SKGETSSRKITEDEQ-NLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSARS 180

Query: 181 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVIP 240
           RSCPFCRNCL  LS RDLWVLTSD +++DSETLA EN+LHFYLY ENLPLFQPD++I +P
Sbjct: 181 RSCPFCRNCLNRLSTRDLWVLTSDEEIIDSETLAKENLLHFYLYTENLPLFQPDMNIFMP 240

Query: 241 DYM 244
           DYM
Sbjct: 241 DYM 242

[Close]

BLAST of Sed0002087 vs. NCBI nr
Match: XP_022151866.1 (uncharacterized protein LOC111019740 isoform X2 [Momordica charantia])

HSP 1 Score: 394.4 bits (1012), Expect = 7.0e-106
Identity = 183/248 (73.79%), Postives = 217/248 (87.50%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWPKQ KRNSFKESVKAVEADI+HAN+LAA+L RDYGGFCI+M LHYSPFAPFLLHLIEW
Sbjct: 37  MWPKQPKRNSFKESVKAVEADIRHANSLAAMLSRDYGGFCIQMRLHYSPFAPFLLHLIEW 96

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+++CTD +PSFLGLFHILLYKVYVD KPL+ PRERKATLREFYAVIYPSLRQL++ H+ 
Sbjct: 97  MDYSCTDSIPSFLGLFHILLYKVYVDGKPLVLPRERKATLREFYAVIYPSLRQLQSGHVL 156

Query: 121 SKDETLYMKRMEDDQRKLCSD-----DLQKDNECGICMENYKDAVLPNCGHSMCLSCFKD 180
            K+ET + KR+ED+++    D     DL++D ECGICMEN ++ VLPNCGHSMCL+CF+D
Sbjct: 157 PKEETSHRKRIEDERKISDEDLERDEDLERDEECGICMENCRNVVLPNCGHSMCLNCFQD 216

Query: 181 WSARSRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDI 240
           WS RSRSCPFCR+CL  LS+ DLW+LT D+D++DSETLA EN+LHFYLY+ENLPLF PDI
Sbjct: 217 WSTRSRSCPFCRSCLNRLSSGDLWILTGDTDIIDSETLAKENLLHFYLYIENLPLFAPDI 276

Query: 241 SIVIPDYM 244
           +I +PDYM
Sbjct: 277 NIFVPDYM 284

[Close]

BLAST of Sed0002087 vs. NCBI nr
Match: XP_022956579.1 (uncharacterized protein LOC111458275 [Cucurbita moschata] >XP_022956580.1 uncharacterized protein LOC111458275 [Cucurbita moschata] >XP_022956581.1 uncharacterized protein LOC111458275 [Cucurbita moschata])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 189/245 (77.14%), Postives = 214/245 (87.35%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MW +Q KRNSFKESVKAVEADI+ AN LAA+  RDYGGFCI+M L YSPFA F LH IEW
Sbjct: 1   MWQQQPKRNSFKESVKAVEADIRRANALAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVD-EKPLLPPRERKATLREFYAVIYPSLRQLRNEHI 120
           M+F+CTDPLPSFLGLFHILLYKVYVD  +PL  PRERKATL+EFYAVIYPSLRQLR+ H+
Sbjct: 61  MDFSCTDPLPSFLGLFHILLYKVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHL 120

Query: 121 ESKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSAR 180
           +SK+ET   KR E DQ+ L +DDLQ+D ECGICMEN +D VLPNCGHSMCLSCF+DWS R
Sbjct: 121 KSKEETSSRKRTE-DQKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLR 180

Query: 181 SRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVI 240
           SRSCPFCRNCL  LSARDLWVLTSD+D+VDSETL  EN++HFYLY+E+LPLFQPD+SI+I
Sbjct: 181 SRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILI 240

Query: 241 PDYML 245
           PDYML
Sbjct: 241 PDYML 244

[Close]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot
Match: Q9M022 (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 8.1e-49
Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 0


Query: 8   RNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTD 67
           R SFK+S+KA+EADIQ AN LA+  P +Y G  ++M L YSP A   L L++W + +   
Sbjct: 2   RKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH--- 61

Query: 68  PLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRN-----EHIESK 127
                LGL  IL+YK YVD K  +   ERK ++REFY V++PSL QL       E  + K
Sbjct: 62  -FAGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQK 121

Query: 128 D--ETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 187
           +  +  Y K+   D+ K+   DL+++ ECGIC+E     VLP C HSMC++C+++W ARS
Sbjct: 122 EICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARS 181

Query: 188 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIV 239
           +SCPFCR  L  +++ DLW+ T  +++ D   +  EN+    +Y++ LPL   D ++V
Sbjct: 182 QSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLV 235

[Close]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot
Match: B6VQ60 (Breast cancer type 1 susceptibility protein homolog OS=Caenorhabditis elegans OX=6239 GN=brc-1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 143 LQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARSR--SCPFCRNCLCGLSARDLWV 202
           LQK+ +CGIC   YKD +L  C H  C SC      R R   CP CR+ L   S RD + 
Sbjct: 15  LQKELKCGICCSTYKDPILSTCFHIFCRSCINACFERKRKVQCPICRSVLDKRSCRDTYQ 74

[Close]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot
Match: Q3UWZ0 (Tripartite motif-containing protein 75 OS=Mus musculus OX=10090 GN=Trim75 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-05
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 143 LQKDNECGICMENYKDAVLPNCGHSMCLSCFKD-WSAR--SRSCPFCRN 189
           LQK+ +C IC+++  D V   CGH+ C SC KD W+ +  + SCP CR+
Sbjct: 10  LQKETKCPICLDDLTDPVTVECGHNFCRSCIKDFWAGQQATSSCPVCRH 58

[Close]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot
Match: Q757D9 (E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=BRE1 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.5e-05
Identity = 23/54 (42.59%), Postives = 31/54 (57.41%), Query Frame = 0


Query: 149 CGICMENYKDAVLPNCGHSMCLSCFKD-WSARSRSCPFCRNCLCGLSARDLWVL 202
           C +C +N+KD V+  CGH  C  C K+  +AR R CP C     G S+ DL V+
Sbjct: 591 CSLCSKNWKDTVIKTCGHVFCADCCKERLAARMRKCPTCNK---GFSSNDLLVV 641

[Close]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot
Match: Q495X7 (Tripartite motif-containing protein 60 OS=Homo sapiens OX=9606 GN=TRIM60 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-04
Identity = 22/51 (43.14%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 142 DLQKDNECGICMENYKDAVLPNCGHSMCLSCFK-DWSARSRS--CPFCRNC 190
           +LQ+++ C IC+E  KD V  NCGH+ C SC    W     +  CP CR C
Sbjct: 9   NLQEESSCPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFC 59

[Close]

BLAST of Sed0002087 vs. ExPASy TrEMBL
Match: A0A1S3BDT3 (peroxisome biogenesis factor 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488931 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.3e-110
Identity = 190/244 (77.87%), Postives = 220/244 (90.16%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWP+Q KRNSFKES+KAVEADI+HAN LAA+LPR+YGGFCI+M LHYSPFAPFLLH IEW
Sbjct: 1   MWPEQPKRNSFKESLKAVEADIRHANTLAAMLPREYGGFCIQMRLHYSPFAPFLLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+FNCTDP+PSFLGLFHILLYKVYVD KPL+ PRERKATL+EFYAVIYPSLRQL++  ++
Sbjct: 61  MDFNCTDPVPSFLGLFHILLYKVYVDGKPLVSPRERKATLKEFYAVIYPSLRQLQSGRVD 120

Query: 121 SKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 180
           SK+ET   K  ED+Q KL ++DLQ+D ECGICMEN +D VLPNCGHSMCL+CFKDWSARS
Sbjct: 121 SKEETSPRKITEDEQ-KLSNEDLQRDEECGICMENCRDVVLPNCGHSMCLNCFKDWSARS 180

Query: 181 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVIP 240
           RSCPFCRNCL  LS RDLW+LTSD++++DSETLA EN+LHFYLY E+LPLFQPD++I IP
Sbjct: 181 RSCPFCRNCLNRLSTRDLWILTSDTEIIDSETLAKENLLHFYLYTESLPLFQPDMNIFIP 240

Query: 241 DYML 245
           DYML
Sbjct: 241 DYML 243

[Close]

BLAST of Sed0002087 vs. ExPASy TrEMBL
Match: A0A6J1DFY1 (uncharacterized protein LOC111019740 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019740 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 3.4e-106
Identity = 183/248 (73.79%), Postives = 217/248 (87.50%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MWPKQ KRNSFKESVKAVEADI+HAN+LAA+L RDYGGFCI+M LHYSPFAPFLLHLIEW
Sbjct: 37  MWPKQPKRNSFKESVKAVEADIRHANSLAAMLSRDYGGFCIQMRLHYSPFAPFLLHLIEW 96

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIE 120
           M+++CTD +PSFLGLFHILLYKVYVD KPL+ PRERKATLREFYAVIYPSLRQL++ H+ 
Sbjct: 97  MDYSCTDSIPSFLGLFHILLYKVYVDGKPLVLPRERKATLREFYAVIYPSLRQLQSGHVL 156

Query: 121 SKDETLYMKRMEDDQRKLCSD-----DLQKDNECGICMENYKDAVLPNCGHSMCLSCFKD 180
            K+ET + KR+ED+++    D     DL++D ECGICMEN ++ VLPNCGHSMCL+CF+D
Sbjct: 157 PKEETSHRKRIEDERKISDEDLERDEDLERDEECGICMENCRNVVLPNCGHSMCLNCFQD 216

Query: 181 WSARSRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDI 240
           WS RSRSCPFCR+CL  LS+ DLW+LT D+D++DSETLA EN+LHFYLY+ENLPLF PDI
Sbjct: 217 WSTRSRSCPFCRSCLNRLSSGDLWILTGDTDIIDSETLAKENLLHFYLYIENLPLFAPDI 276

Query: 241 SIVIPDYM 244
           +I +PDYM
Sbjct: 277 NIFVPDYM 284

[Close]

BLAST of Sed0002087 vs. ExPASy TrEMBL
Match: A0A6J1GWY5 (uncharacterized protein LOC111458275 OS=Cucurbita moschata OX=3662 GN=LOC111458275 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.8e-106
Identity = 189/245 (77.14%), Postives = 214/245 (87.35%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           MW +Q KRNSFKESVKAVEADI+ AN LAA+  RDYGGFCI+M L YSPFA F LH IEW
Sbjct: 1   MWQQQPKRNSFKESVKAVEADIRRANALAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEW 60

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVD-EKPLLPPRERKATLREFYAVIYPSLRQLRNEHI 120
           M+F+CTDPLPSFLGLFHILLYKVYVD  +PL  PRERKATL+EFYAVIYPSLRQLR+ H+
Sbjct: 61  MDFSCTDPLPSFLGLFHILLYKVYVDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHL 120

Query: 121 ESKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSAR 180
           +SK+ET   KR E DQ+ L +DDLQ+D ECGICMEN +D VLPNCGHSMCLSCF+DWS R
Sbjct: 121 KSKEETSSRKRTE-DQKGLSNDDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSLR 180

Query: 181 SRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVI 240
           SRSCPFCRNCL  LSARDLWVLTSD+D+VDSETL  EN++HFYLY+E+LPLFQPD+SI+I
Sbjct: 181 SRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILI 240

Query: 241 PDYML 245
           PDYML
Sbjct: 241 PDYML 244

[Close]

BLAST of Sed0002087 vs. ExPASy TrEMBL
Match: A0A6J1K7J3 (uncharacterized protein LOC111492969 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.9e-102
Identity = 182/245 (74.29%), Postives = 213/245 (86.94%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           M  +Q KR SFKESVKAVEADI+ AN LAA+  R+YGGFCI+M L YSPFA F LH IEW
Sbjct: 73  MRQQQPKRISFKESVKAVEADIRRANALAAMFSREYGGFCIQMRLQYSPFALFFLHWIEW 132

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVD-EKPLLPPRERKATLREFYAVIYPSLRQLRNEHI 120
           M+F+CTDPLPSFLGLFH+LLYKVY+D  +PL  PRERKATL+EFYAVIYPSLRQLR+ H+
Sbjct: 133 MDFSCTDPLPSFLGLFHVLLYKVYIDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHL 192

Query: 121 ESKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSAR 180
           +SK+ET   KR+E DQ+ + ++DLQ+D ECGICMEN +D VLPNCGHSMCLSCF+DWS R
Sbjct: 193 KSKEETSSRKRIE-DQKGISNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPR 252

Query: 181 SRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVI 240
           SRSCPFCRNCL  LSARDLWVLTSD+D+VDSETL  EN++HFYLY+E+LPLFQPD+SI+I
Sbjct: 253 SRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILI 312

Query: 241 PDYML 245
           PDYML
Sbjct: 313 PDYML 316

[Close]

BLAST of Sed0002087 vs. ExPASy TrEMBL
Match: A0A6J1KDZ0 (uncharacterized protein LOC111492969 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492969 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.9e-102
Identity = 182/245 (74.29%), Postives = 213/245 (86.94%), Query Frame = 0


Query: 1   MWPKQLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEW 60
           M  +Q KR SFKESVKAVEADI+ AN LAA+  R+YGGFCI+M L YSPFA F LH IEW
Sbjct: 55  MRQQQPKRISFKESVKAVEADIRRANALAAMFSREYGGFCIQMRLQYSPFALFFLHWIEW 114

Query: 61  MNFNCTDPLPSFLGLFHILLYKVYVD-EKPLLPPRERKATLREFYAVIYPSLRQLRNEHI 120
           M+F+CTDPLPSFLGLFH+LLYKVY+D  +PL  PRERKATL+EFYAVIYPSLRQLR+ H+
Sbjct: 115 MDFSCTDPLPSFLGLFHVLLYKVYIDGHQPLASPRERKATLKEFYAVIYPSLRQLRSGHL 174

Query: 121 ESKDETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSAR 180
           +SK+ET   KR+E DQ+ + ++DLQ+D ECGICMEN +D VLPNCGHSMCLSCF+DWS R
Sbjct: 175 KSKEETSSRKRIE-DQKGISNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPR 234

Query: 181 SRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVI 240
           SRSCPFCRNCL  LSARDLWVLTSD+D+VDSETL  EN++HFYLY+E+LPLFQPD+SI+I
Sbjct: 235 SRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSILI 294

Query: 241 PDYML 245
           PDYML
Sbjct: 295 PDYML 298

[Close]

BLAST of Sed0002087 vs. TAIR 10
Match: AT1G24440.1 (RING/U-box superfamily protein )

HSP 1 Score: 209.1 bits (531), Expect = 3.9e-54
Identity = 103/244 (42.21%), Postives = 156/244 (63.93%), Query Frame = 0


Query: 5   QLKRNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFN 64
           QL ++S+++S+K +EADI+HAN LAA +P    G  ++M L  S  APF + L++WM+F+
Sbjct: 4   QLTKSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFS 63

Query: 65  CTDPLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIESKDE 124
           C   LP +   FHIL+YKV  D +       RKAT+REFY VI PSL +L     +  DE
Sbjct: 64  CL--LPRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDE 123

Query: 125 TLYMKRME---------DDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKD 184
           +L+    +         +  R + S DL++++ECGIC+E     VLPNC H+MC+ C+++
Sbjct: 124 SLWYPNPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRN 183

Query: 185 WSARSRSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDI 240
           W+ +S SCPFCR  +  +++ DLWVLT D DVVD ET+  E++L FYL++ +LP   P+ 
Sbjct: 184 WNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEA 243

[Close]

BLAST of Sed0002087 vs. TAIR 10
Match: AT1G13195.1 (RING/U-box superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 8.1e-52
Identity = 98/239 (41.00%), Postives = 152/239 (63.60%), Query Frame = 0


Query: 9   NSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTDP 68
           +S+ ES+K +EAD+QHAN+LA  +P       ++M L +S FA  LL L+ W++ + +  
Sbjct: 14  SSYYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCL 73

Query: 69  LPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRN--EHIESKDETL 128
           +P +L LFH+L+YKV  D +P L    RKAT+ EFY VI PSL+ L +  + +E+ D   
Sbjct: 74  IPRYLNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGF 133

Query: 129 YMKRM------EDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 188
            +KR+      E    +  +  L+++ ECGIC+E     VLPNC HSMC+ C+++W+ +S
Sbjct: 134 DLKRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKS 193

Query: 189 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIVI 240
           +SCPFCR  +  +++ DLWVL  D+DVVD+ T + E++  FYLY+ +LP   P+   V+
Sbjct: 194 QSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVV 252

[Close]

BLAST of Sed0002087 vs. TAIR 10
Match: AT5G58787.1 (RING/U-box superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-51
Identity = 100/229 (43.67%), Postives = 141/229 (61.57%), Query Frame = 0


Query: 10  SFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTDPL 69
           SFK+S+KA+EADIQHAN LA   PR+  G  ++M L YSP A F L L++W +      L
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCK----L 64

Query: 70  PSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIESKD----ET 129
             FLGL  +L+Y  Y D K  +   ERKA++REF AVI PSL QL+    +  D    E 
Sbjct: 65  AGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEV 124

Query: 130 LYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARSRSCPF 189
             M+  + D+ ++   +++++ ECGICME     VLPNC HS+C+ C++DW  RS+SCPF
Sbjct: 125 CKMRYRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPF 184

Query: 190 CRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPD 235
           CR+ L  + + DLW+    +D V+   +A EN    ++Y+E LPL  PD
Sbjct: 185 CRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPD 229

[Close]

BLAST of Sed0002087 vs. TAIR 10
Match: AT3G47160.1 (RING/U-box superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-51
Identity = 100/232 (43.10%), Postives = 143/232 (61.64%), Query Frame = 0


Query: 10  SFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTDPL 69
           SFK+S+KA+EADIQHAN +A   PR+  G  ++M L Y+P A FLL L++W + +    L
Sbjct: 5   SFKDSLKALEADIQHANTVALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTDCH----L 64

Query: 70  PSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRNEHIESKD------ 129
              LGL  +L+Y  Y D K  +   ERK ++++FYAVI+PSL QL     +  D      
Sbjct: 65  AGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEV 124

Query: 130 -ETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARSRS 189
            +  Y  + E ++ KL   D++++ ECGICME     VLPNC HS+C+ C++DW  RS S
Sbjct: 125 CKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSES 184

Query: 190 CPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPD 235
           CPFCR+ L  +++ DLW+L   SD V+  T+  EN    ++Y+E LPL  PD
Sbjct: 185 CPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPD 232

[Close]

BLAST of Sed0002087 vs. TAIR 10
Match: AT5G01520.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 5.8e-50
Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 0


Query: 8   RNSFKESVKAVEADIQHANNLAAILPRDYGGFCIKMSLHYSPFAPFLLHLIEWMNFNCTD 67
           R SFK+S+KA+EADIQ AN LA+  P +Y G  ++M L YSP A   L L++W + +   
Sbjct: 2   RKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCH--- 61

Query: 68  PLPSFLGLFHILLYKVYVDEKPLLPPRERKATLREFYAVIYPSLRQLRN-----EHIESK 127
                LGL  IL+YK YVD K  +   ERK ++REFY V++PSL QL       E  + K
Sbjct: 62  -FAGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQK 121

Query: 128 D--ETLYMKRMEDDQRKLCSDDLQKDNECGICMENYKDAVLPNCGHSMCLSCFKDWSARS 187
           +  +  Y K+   D+ K+   DL+++ ECGIC+E     VLP C HSMC++C+++W ARS
Sbjct: 122 EICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARS 181

Query: 188 RSCPFCRNCLCGLSARDLWVLTSDSDVVDSETLAMENILHFYLYVENLPLFQPDISIV 239
           +SCPFCR  L  +++ DLW+ T  +++ D   +  EN+    +Y++ LPL   D ++V
Sbjct: 182 QSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLV 235

The following BLAST results are available for this feature:

BLAST of Sed0002087 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446106.1	4.7e-110	77.87	PREDICTED: peroxisome biogenesis factor 10-like isoform X1 [Cucumis melo]	[more]
XP_004135299.1	1.4e-109	77.46	E3 ubiquitin-protein ligase AIRP2 isoform X1 [Cucumis sativus]	[more]
XP_038893281.1	8.8e-109	78.19	E3 ubiquitin-protein ligase AIRP2-like isoform X1 [Benincasa hispida]	[more]
XP_022151866.1	7.0e-106	73.79	uncharacterized protein LOC111019740 isoform X2 [Momordica charantia]	[more]
XP_022956579.1	1.2e-105	77.14	uncharacterized protein LOC111458275 [Cucurbita moschata] >XP_022956580.1 unchar...	[more]

BLAST of Sed0002087 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M022	8.1e-49	41.60	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]
B6VQ60	1.3e-06	43.55	Breast cancer type 1 susceptibility protein homolog OS=Caenorhabditis elegans OX...	[more]
Q3UWZ0	1.9e-05	44.90	Tripartite motif-containing protein 75 OS=Mus musculus OX=10090 GN=Trim75 PE=2 S...	[more]
Q757D9	2.5e-05	42.59	E3 ubiquitin-protein ligase BRE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109...	[more]
Q495X7	3.6e-04	43.14	Tripartite motif-containing protein 60 OS=Homo sapiens OX=9606 GN=TRIM60 PE=1 SV...	[more]

BLAST of Sed0002087 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BDT3	2.3e-110	77.87	peroxisome biogenesis factor 10-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DFY1	3.4e-106	73.79	uncharacterized protein LOC111019740 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1GWY5	5.8e-106	77.14	uncharacterized protein LOC111458275 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A6J1K7J3	3.9e-102	74.29	uncharacterized protein LOC111492969 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KDZ0	3.9e-102	74.29	uncharacterized protein LOC111492969 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0002087 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24440.1	3.9e-54	42.21	RING/U-box superfamily protein	[more]
AT1G13195.1	8.1e-52	41.00	RING/U-box superfamily protein	[more]
AT5G58787.1	2.3e-51	43.67	RING/U-box superfamily protein	[more]
AT3G47160.1	8.9e-51	43.10	RING/U-box superfamily protein	[more]
AT5G01520.1	5.8e-50	41.60	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 149..186 e-value: 9.2E-8 score: 41.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 147..187 e-value: 1.8E-10 score: 41.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 149..187 score: 13.256433
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 108..209 e-value: 3.0E-15 score: 57.9
None	No IPR available	PANTHER	PTHR15315:SF22	RING-H2 FINGER PROTEIN ATL47-LIKE	coord: 3..244
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 3..244
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 137..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002087.1	Sed0002087.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity