Sed0002078 (gene) Chayote v1

Overview


Name	Sed0002078
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic-like
Location	LG10: 430128 .. 434758 (-)
RNA-Seq Expression	Sed0002078
Synteny	Sed0002078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACCTGTTATATTTCTGACGTCATTTCTAATTACCCTTCCCTTCTCCGATTCAATTTCCCTTTCCTTCTCCGATTTGAGATTTCAAAGAGAGAAAGCAACGATTATGCTCGGTGGCTTGTACGGAGATCTCCCTCCGCCGTCGTCGGCGGAGGAAGACAAGCCCACCAATTCCACCGTCTGGTCAAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCCTCCTCCGTCTTCGCGCCGCAGACCGTTCTCAGATCTCAAGGCAGAGTAAAACCTTCCCCCTCGACGCACCCGAAGCCTTCGGCGGCGCCGCCGGTCGAGCTGTTTCAGCCGATTCAGGCTGAGGAGATTACGCAACCGGCATTGGTGGCCGTGACGTCGTCGGTCGTCGAAGAGTATGATCCGGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCCATGGAGGCTGAGATGAGGAAGGAACTCGAGAGGCGTAGACAAGAGGAGGAGGAGAGGGAGAAGAAGGAGCGGGAGGAGCGAGAAAGAGAGTATTCTGAATCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGTGCGGCGAAGAGTGGGGCGATTCCGAGATCGCCGTCGCCACCGAGTACCGGGGACGGTTTCAGCATTGGAAAATCGGAGACTGTCGGGTTGGGCGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGGATGATGGCTAAGATGGGGTGGAAACAGGGACAAGGGCTCGGAAAACAGGAACAAGGGATTACCACTCCTCTGATGGCAAAAAAGACAGACTCTCGTGCTGGTGTAATTGTGAATGCCAATGATACGAAATCGGAGAAGAAGCCGAAGAGTGTCAACTTGAACGGGCTACCTACTCGGGTTCTCCTGCTCAGAAACATGGTATGGTTCTGTAGATTTCTGTCATTTTGTTGATTTGAAATGAATTTTAGGCAGCAGAGTTCGTTCTTATTGCTCGAGTTCTATTCGAATATTCGAAATACTGAGTTAGATTAGAGCCATCTAGAATGGTTTACGGTAACTTATTATATCATGTTTTCATCTTTTAAGCACAATTTCTTCTTTTAATCCATCGTTAAAAATGCATGAACTTGAGTACAATCGTGGTTATACATATCTGGTGAAGGTTCAATTCCTAATCTTTGTATAGTCTTGCTCTCTAATGCATTTGGACGTCGGAGAACTAAACTTTTTATTGTCCCATTCTAATCTTTGTATCTTTATCTCTCTTCCAATTAACCTACTCTGATTTAGTTGCAATGATAGACCATTACGGACAATGGATTCTTAATTAGGCAGTAAGGTTGCTAGCTGCCACCTGCTGTTCTTATTAGTAAATTTTTCACCCAGTTATGGATAACTGCACTAGGAGTAGCAATCATTTGGAATAAGAAATGGACACTTCATAGTTGCATATCTCTTCTTGTGTGGAAAATTGTAGAGCATAACAATGGGATCCAAGTTCTAGATAGGTGGTAATCACGGATTGAACTCATTCATTTGAGGCCCTTTTGTTGATCACCACGCCACCCCATGTTTGTTAACTTTTTTTTTTATCAGAAACATCAACAATGAAATTAGGCCATCAAAAAAGAGAACACCGTAAGGGTTGAGGGATCAGAACTCCTCCACGCTACAAAGAAAACTACTTGCAAAGAGCTTTCTAATCAAGAAGTACCAAAAAGATAGAGTAGTTACTAAATGATTTGCCTAGGCTTTTGTGCCGCCAAGAGGCATTAAGTTGTACAAAAGACTTAAAATTAAGAAGAGGCTCTATTGTTTCTTATCCAAAAAAAATTAAGAGAGCTCGACTTATCCTTAAAAATTATCTTGTTTCACTCCAGACATAAATGCCAAAAAGGGCCCTAGGAGCGAAATTCCACAACACTTGAGCTTTACTAACAAACCCAACCCTCAAAGCGCTTCCACAACCCAGTGAGTCATGCACTTTCCTTGGGAAGCAAATTTGTGAACTAAAAATATCTTGAAGAAACTCCTATCACTATCTAGCAAAAGAGCAATGTAATAGGTTTCCAAAAAAAAAAAGAGCAATGTAATAGAAGATGGTCTTGACTAGAGAATCTGCATCAGCCATATACAAGGTAAATCGAGGGGCCAATAATATAAAAAGAAAACTTTCTTTGAAGTCTATCATAGGTATTAATATTTCTACTGGCCTTCTTATCCAAAAAAAAAATCTACTAAGATTTTCACCTTTTTGGGAACCTTAGAATTCCAAATCAACTTAGGCATATTAGAACTAAGGCAGTGTCTAATTCCCACCAACTTCAAGAAAGCAGACTTCGTAGAGAATGCCCTAGAAGCTTCTAAGTTCCACCAAATCGCATCCTCTCCCTGCCCCATCCGAAAGCCTTCTAGGTTTTTTAATCAACTCAAGCCAACTCTGCACCTCTCTGTCAAAAGAGCCTCTTTTAAGACCCAAATTCCACGCCCCTTTGCTCTGTCATTTCAACAATCCGTGAATATAGCATCCTTCTTCAACTATAATGTGAAAATATTTGGTAATAAATTCTTAAGAGAGCGTCGTCCCTTAGCCAATGATCATGCCGGAAGCTAATTCTATTCCTATTTTCAGATTTAAACTAACAATAGCCTAAAAAAGAGGGGCTAGCTTTGCGATCTCAACCGGGGCCGGCTGCAAGATCTACCCTTCGGCTGAATAAGATTCGAACCTAAAAAGTTTTCCTTGTACACCTTGTATGAGAATAGTTACACGTGAGAGACACCACTATTTGTTAATAGCAGGTGGAATTTTATGATAAATTTACTTGGGCAAAGCTAGTAAATATTTAAGATTTTATGTATATATTTCAGATTCTTAAAAAAAAAACAGACTAGAAGAAGCATGTTTATGCTTGAACATTCCCTCTATCCTAGTAACAACTTGTATAAATGTGAATCTAGGTTATATTTTAATATCATTAAACAAATTAGTTGACATATGTTATTATAGTGTAGTGGTTTAATGTTCTAAATCTAATCTTTCATTTTTGCTTGGGTTGCTTGAGTTTTTGCATTTCTTCGGTTTAATTATGTGTTATCTTCGTGTTCCCAAGGGATGGTATAATGGTTGAAAACTTGGGCTTTAAAGGTGTGCTCCCCCACGGTCTCAGGTTTGAGACTCACGGGTGATATTTATTTGTAGACACCATTCGTGTCTTCATTCCTTCAATGTCTCCTGGTGCTTGGCCTAGGGATAGGCGTGGTTACCCCGGGTATAGTGGAGCGAAACTCCGATTTCTCGATTTCAAAAAAAAAAATTATGTGTTATGAGGGTTGGTGTGGATGAGGTACTTGGGACTTGGGAGGAATAACAGTATGTAAGCGCTGATGAGTGAGCGAAATGGGGGGATAGAACAGACCTCTCTTACCTGCATTTGTATGGAATTGATTTAGGATAAGAGAAAGACTAGATATCAATATTTCTTTTGACCGTAAAGACAGACTTAAAATTAAAGAAAGACAATATCAATTGAGGGAGGAGGGATTCATTATTATTTTAGAACAAGTGTCGACTTGGAGGGTTATTTTCTGTTTAACTAAGAATCAATTTCAGTTCTATAGATCACATCACATTCACATGTGAGTTTATCGACACTTCCTCTAAGTTGCTCCTTTTTGTGGGATAAGTCTTTTTGTATGGCCTTATATTCTTTCATTTCTTCTTTATGAAAGTTGGTTTTTATTTTTTTTATTTTTTTGAAAAAATTATGCACGAGGCCAAAAAACAAGTATATTTATCTAGATGAATCATTTTTTCATTTTAAAGAGAGCCTGGCACTTTCTTCAGATAATCAAAAGCATCTCATTTGTGAATTTTCCTGAAAAGTGATGAAAATGGCTGCCTTGTTTGATTTTTCTTGAAGGTGGGTCCCGGTGAGGTAGACGATGAGCTAGAAGAAGAAGTAGGATCAGAGTGTGCAAAGTATGGCACTGTAACACGGGTTCTAATATTTGAGATTACAGAACCCAATTTTCCGGTGGACGAGGCTGTTCGAATCTTTGTGCAGTTTGAAAGATCGGAAGAAACAACGAAGGCTTTGGTCGATCTAGATGGTCGGTTCTTTGGCGGAAGAGTGGTTCGAGCTACATTTTATGATGAGGACAAGTTCGGTAAGAATGAATTGGCTCCAATGCCGGGAGAAGTCCCTGGATTTACATGAGAAATCCAAGAAGTGAAAAAAGGCCAGTGCTCATGCTGCTGCTATGAAGCTATATGATTAATTTAGATGGGATTCGACTGTGCATTAACTTTTCTGTTGTAAAGAGATTTTCCCATGATGTTGTTGACTGAATGAAGCCCAAGAATGGAATTGTTGAAATTGTCTTATTAAAGCTTGCAGATTGTTATAATCAAATAGTTGCTATTGATAAAATTTCATCTGATGAGTGAAAAATGTCAAAAAACAGTGAGACTTATCACAAAAAAGGATGGAACTTATGAGACCAATATACGGCCAAATTAGGGATTGATTCGATCAACCAATTCTTGGTGCGGTTTCATAGCGGTATTATTAATGGCTTAAAACCCGAGTTAGACTTGTATCTCGAGCCGAAGCGCA

mRNA sequence

AAAAAACCTGTTATATTTCTGACGTCATTTCTAATTACCCTTCCCTTCTCCGATTCAATTTCCCTTTCCTTCTCCGATTTGAGATTTCAAAGAGAGAAAGCAACGATTATGCTCGGTGGCTTGTACGGAGATCTCCCTCCGCCGTCGTCGGCGGAGGAAGACAAGCCCACCAATTCCACCGTCTGGTCAAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCCTCCTCCGTCTTCGCGCCGCAGACCGTTCTCAGATCTCAAGGCAGAGTAAAACCTTCCCCCTCGACGCACCCGAAGCCTTCGGCGGCGCCGCCGGTCGAGCTGTTTCAGCCGATTCAGGCTGAGGAGATTACGCAACCGGCATTGGTGGCCGTGACGTCGTCGGTCGTCGAAGAGTATGATCCGGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCCATGGAGGCTGAGATGAGGAAGGAACTCGAGAGGCGTAGACAAGAGGAGGAGGAGAGGGAGAAGAAGGAGCGGGAGGAGCGAGAAAGAGAGTATTCTGAATCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGTGCGGCGAAGAGTGGGGCGATTCCGAGATCGCCGTCGCCACCGAGTACCGGGGACGGTTTCAGCATTGGAAAATCGGAGACTGTCGGGTTGGGCGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGGATGATGGCTAAGATGGGGTGGAAACAGGGACAAGGGCTCGGAAAACAGGAACAAGGGATTACCACTCCTCTGATGGCAAAAAAGACAGACTCTCGTGCTGGTGTAATTGTGAATGCCAATGATACGAAATCGGAGAAGAAGCCGAAGAGTGTCAACTTGAACGGGCTACCTACTCGGGTTCTCCTGCTCAGAAACATGGTGGGTCCCGGTGAGGTAGACGATGAGCTAGAAGAAGAAGTAGGATCAGAGTGTGCAAAGTATGGCACTGTAACACGGGTTCTAATATTTGAGATTACAGAACCCAATTTTCCGGTGGACGAGGCTGTTCGAATCTTTGTGCAGTTTGAAAGATCGGAAGAAACAACGAAGGCTTTGGTCGATCTAGATGGTCGGTTCTTTGGCGGAAGAGTGGTTCGAGCTACATTTTATGATGAGGACAAGTTCGGTAAGAATGAATTGGCTCCAATGCCGGGAGAAGTCCCTGGATTTACATGAGAAATCCAAGAAGTGAAAAAAGGCCAGTGCTCATGCTGCTGCTATGAAGCTATATGATTAATTTAGATGGGATTCGACTGTGCATTAACTTTTCTGTTGTAAAGAGATTTTCCCATGATGTTGTTGACTGAATGAAGCCCAAGAATGGAATTGTTGAAATTGTCTTATTAAAGCTTGCAGATTGTTATAATCAAATAGTTGCTATTGATAAAATTTCATCTGATGAGTGAAAAATGTCAAAAAACAGTGAGACTTATCACAAAAAAGGATGGAACTTATGAGACCAATATACGGCCAAATTAGGGATTGATTCGATCAACCAATTCTTGGTGCGGTTTCATAGCGGTATTATTAATGGCTTAAAACCCGAGTTAGACTTGTATCTCGAGCCGAAGCGCA

Coding sequence (CDS)

ATGCTCGGTGGCTTGTACGGAGATCTCCCTCCGCCGTCGTCGGCGGAGGAAGACAAGCCCACCAATTCCACCGTCTGGTCAAGCAGCACAAAAATGGCGCCGCCGACCCTACGTAAGCCCTCCTCCGTCTTCGCGCCGCAGACCGTTCTCAGATCTCAAGGCAGAGTAAAACCTTCCCCCTCGACGCACCCGAAGCCTTCGGCGGCGCCGCCGGTCGAGCTGTTTCAGCCGATTCAGGCTGAGGAGATTACGCAACCGGCATTGGTGGCCGTGACGTCGTCGGTCGTCGAAGAGTATGATCCGGCGAGGCCGAATGACTACGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCCATGGAGGCTGAGATGAGGAAGGAACTCGAGAGGCGTAGACAAGAGGAGGAGGAGAGGGAGAAGAAGGAGCGGGAGGAGCGAGAAAGAGAGTATTCTGAATCTAGGTTAAATATTTCAGGGGAGGAAGCTTGGAGAAGGCGTGCGGCGAAGAGTGGGGCGATTCCGAGATCGCCGTCGCCACCGAGTACCGGGGACGGTTTCAGCATTGGAAAATCGGAGACTGTCGGGTTGGGCGTTGGGGCTGGTGGGCAGATGACAGCGGCTCAAAGGATGATGGCTAAGATGGGGTGGAAACAGGGACAAGGGCTCGGAAAACAGGAACAAGGGATTACCACTCCTCTGATGGCAAAAAAGACAGACTCTCGTGCTGGTGTAATTGTGAATGCCAATGATACGAAATCGGAGAAGAAGCCGAAGAGTGTCAACTTGAACGGGCTACCTACTCGGGTTCTCCTGCTCAGAAACATGGTGGGTCCCGGTGAGGTAGACGATGAGCTAGAAGAAGAAGTAGGATCAGAGTGTGCAAAGTATGGCACTGTAACACGGGTTCTAATATTTGAGATTACAGAACCCAATTTTCCGGTGGACGAGGCTGTTCGAATCTTTGTGCAGTTTGAAAGATCGGAAGAAACAACGAAGGCTTTGGTCGATCTAGATGGTCGGTTCTTTGGCGGAAGAGTGGTTCGAGCTACATTTTATGATGAGGACAAGTTCGGTAAGAATGAATTGGCTCCAATGCCGGGAGAAGTCCCTGGATTTACATGA

Protein sequence

MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSPSTHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAMEAEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPSTGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSRAGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNELAPMPGEVPGFT

Homology

[Close]

BLAST of Sed0002078 vs. NCBI nr
Match: XP_023003194.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 653.7 bits (1685), Expect = 9.7e-184
Identity = 346/372 (93.01%), Postives = 359/372 (96.51%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S + PVE  QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYS+SRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           TGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN+NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FGKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. NCBI nr
Match: KAG6594427.1 (DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026427.1 DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 649.0 bits (1673), Expect = 2.4e-182
Identity = 343/372 (92.20%), Postives = 358/372 (96.24%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S + PVE  QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AE RKELERRRQEEEEREKKEREERERE+S+SRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AETRKELERRRQEEEEREKKEREEREREHSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           TGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN+NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FGKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. NCBI nr
Match: XP_023518236.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 647.5 bits (1669), Expect = 7.0e-182
Identity = 344/375 (91.73%), Postives = 359/375 (95.73%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S + PVE  QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKK---EREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPS 180
           AEMRKELERRRQEEEEREKK   EREEREREYS+SRLNISGEEAWRRRAAKSGA+PRSPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPS 180

Query: 181 PPSTGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKT 240
           PPSTGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKT
Sbjct: 181 PPSTGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKT 240

Query: 241 DSRAGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGT 300
           D RAGVIVNANDTKSEKK KSVN+NGLPTR+L+LRNMVGPGEVDDELEEEVGSECAKYGT
Sbjct: 241 DLRAGVIVNANDTKSEKKVKSVNINGLPTRILMLRNMVGPGEVDDELEEEVGSECAKYGT 300

Query: 301 VTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFG 360
           VTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FG
Sbjct: 301 VTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFG 360

Query: 361 KNELAPMPGEVPGFT 373
           KNELAPMPGEVPGFT
Sbjct: 361 KNELAPMPGEVPGFT 375

[Close]

BLAST of Sed0002078 vs. NCBI nr
Match: XP_038882071.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida])

HSP 1 Score: 645.2 bits (1663), Expect = 3.5e-181
Identity = 343/372 (92.20%), Postives = 355/372 (95.43%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ ++K + 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S + PVE  QPI AE I QPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEVIAQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYS+SR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN NGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDED+F KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDRFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. NCBI nr
Match: XP_022926730.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 644.8 bits (1662), Expect = 4.5e-181
Identity = 343/372 (92.20%), Postives = 356/372 (95.70%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S  P     QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVEPS----QPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYS+SRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           TGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN+NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FGKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 368

[Close]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 497.3 bits (1279), Expect = 1.5e-139
Identity = 278/387 (71.83%), Postives = 312/387 (80.62%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKP-- 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR   + KP  
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  -SPSTHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRK 120
            +P   P PS +    L    ++    QPALV VTSSV+EEYDPARPNDYEEY+ EKKRK
Sbjct: 61  SAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKKRK 120

Query: 121 AMEAEMRKELERRRQEEEEREKKEREEREREYSE-----SRLNISGEEAWRRRAAK---- 180
           A EAEM++E+++RRQE+EER+K+EREERE+E        SRLNISGEEAW+RRAA     
Sbjct: 121 ATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSGGG 180

Query: 181 SGAIPRSPSPPSTGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGI 240
           SG   RS SPP   DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWKQGQGLGK EQGI
Sbjct: 181 SGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQGI 240

Query: 241 TTPLMAKKTDSRAGVIVNANDTKS----EKKPKSVNLNGLPTRVLLLRNMVGPGEVDDEL 300
           TTPLMAKKTD RAGVIVNA++ KS    +K  KSVN+NG PTRVLLLRNMVGPG+VDDEL
Sbjct: 241 TTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDDEL 300

Query: 301 EEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGR 360
           E+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGR+FGGR
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 361 VVRATFYDEDKFGKNELAPMPGEVPGF 372
            VRATFYDE+KF KNELAP+PGE+PG+
Sbjct: 361 TVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-34
Identity = 136/366 (37.16%), Postives = 187/366 (51.09%), Query Frame = 0


Query: 39  KPSSVFAPQTVLRSQGRVKPSPSTHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEE 98
           K S+V AP   L+  G           P  A    L  P+ +       L+     + +E
Sbjct: 46  KQSTVLAPVIDLKRGGSSDDRQIVDTPPHVA--AGLKDPVPSGFSAGEVLI----PLADE 105

Query: 99  YDPARPNDYEEYRVEKKRKAMEAEMRKELERRRQ-EEEEREKKEREE----REREYSESR 158
           YDP  PNDYE+     KR+  E + ++ELER+++ EE E+ +K+R E      R   +S 
Sbjct: 106 YDPMFPNDYEKV---VKRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSD 165

Query: 159 LNISGEEAWRRRAAKSGAI------------------------PRSPS-----PPSTGDG 218
            +   E   R+R+    AI                        PRS S     PP   + 
Sbjct: 166 EDEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEE 225

Query: 219 FSIGKSET---VGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSRA 278
               +S T          GG  T A ++M K G+++GQGLGK EQG++T L  +KT  R 
Sbjct: 226 QDRPRSPTGPSNSFLANMGG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRG 285

Query: 279 GVIVNANDTKSEKKPKS-----VNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYG 338
           G I+  + T+ +   KS       +   PT+V+LLRNMVG GEVD++LE E   EC KYG
Sbjct: 286 GKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYG 345

Query: 339 TVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKF 363
            V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GR+FGGRVV+A FY+ DKF
Sbjct: 346 KVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 398

[Close]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-34
Identity = 135/380 (35.53%), Postives = 187/380 (49.21%), Query Frame = 0


Query: 39  KPSSVFAPQTVLRSQGRVKPSPSTHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEE 98
           K S+V AP   L+  G           P  A    L  P+ +       L+     + +E
Sbjct: 46  KQSTVLAPVIDLKRGGSSDDRQIADTPPHVA--AGLKDPVPSGFSAGEVLI----PLADE 105

Query: 99  YDPARPNDYEEY---RVEKKRKAMEAEMRKELERRRQEEEER-----------------E 158
           YDP  PNDYE+    + E++++  E E +KE+E R +  ++R                 E
Sbjct: 106 YDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDE 165

Query: 159 KKEREEREREYSESRL---------------NISGEEAWRRRAAKSGAI----------- 218
             ERE R+R    + +               +   EE  R R+  S A            
Sbjct: 166 DYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDR 225

Query: 219 PRSPSPPSTGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPL 278
           PRSP+ PS     ++G               T A ++M K G+++GQGLGK EQG++T L
Sbjct: 226 PRSPTGPSNSFLANMGG--------------TVAHKIMQKYGFREGQGLGKHEQGLSTAL 285

Query: 279 MAKKTDSRAGVIVNANDT----------KSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDD 338
             +KT  R G I+  + T          KS+  P +  L   PT+V+LLRNMVG GEVD+
Sbjct: 286 SVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILK-CPTKVVLLRNMVGAGEVDE 345

Query: 339 ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFG 363
           +LE E   EC KYG V + +IFEI  P  P DEAVRIF++FER E   KA+VDL+GR+FG
Sbjct: 346 DLEVETKEECEKYGKVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 402

[Close]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot
Match: Q8T6B9 (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster OX=7227 GN=hfp PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-17
Identity = 70/210 (33.33%), Postives = 101/210 (48.10%), Query Frame = 0


Query: 171 AIPRSPSPPSTGDGFSIGKSETVGL--------GVGAGGQMTAAQRMMAKMGWKQGQGLG 230
           A+  +P+ P T  G  +G   TV          G  A   ++AA    A       + + 
Sbjct: 427 ALLATPTLPMTVGGVGVGLVPTVATLAGAEASKGAAAAAALSAAANNAAVTAANLSENIK 486

Query: 231 KQEQGITTPLMAKKTDSRAGVIVNANDTKSEKKPKSVNL------NGLPTRVLLLRNMVG 290
           K  +     L  K  D      +   +  S K   +  L        + +RV++LRNMVG
Sbjct: 487 KAHEKQQEELQKKLMDEGDVQTLQQQENMSIKGQSARQLVMQRLMRPVDSRVIILRNMVG 546

Query: 291 PGEVDDELEEEVGSECAKYGTVTRVLIF-EITEPNFPVDEA---VRIFVQFERSEETTKA 350
           P +VD+ L+EE+  EC+K+GTV+RV+IF E    N   DEA   V+IFV+F    E  + 
Sbjct: 547 PEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRG 606

Query: 351 LVDLDGRFFGGRVVRATFYDEDKFGKNELA 363
              LDGRFFGGR V A  YD+  F + +L+
Sbjct: 607 KEALDGRFFGGRRVVAELYDQGIFDQGDLS 636

[Close]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot
Match: Q2HJG2 (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.6e-17
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 268 VLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERS 327
           V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  +
Sbjct: 434 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA 493

Query: 328 EETTKALVDLDGRFFGGRVVRATFYDEDKFGKNELA 363
            ET KA+ DL+GR+F GR V A  YD+++F  ++L+
Sbjct: 494 SETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529

[Close]

BLAST of Sed0002078 vs. ExPASy TrEMBL
Match: A0A6J1KSL4 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496883 PE=4 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 4.7e-184
Identity = 346/372 (93.01%), Postives = 359/372 (96.51%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S + PVE  QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYS+SRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           TGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN+NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FGKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. ExPASy TrEMBL
Match: A0A6J1ELY8 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433765 PE=4 SV=1)

HSP 1 Score: 644.8 bits (1662), Expect = 2.2e-181
Identity = 343/372 (92.20%), Postives = 356/372 (95.70%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQ +VKP+ 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S  P     QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVEPS----QPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREYS+SRLNISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           TGDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN+NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++FGKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 368

[Close]

BLAST of Sed0002078 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 1.9e-180
Identity = 342/372 (91.94%), Postives = 355/372 (95.43%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ ++K + 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S +  VE  QPI AE ITQPALVAVTS+VVEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+S+SR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN NGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++F KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 639.8 bits (1649), Expect = 7.0e-180
Identity = 341/372 (91.67%), Postives = 354/372 (95.16%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ +VK + 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK SA+  VE  QPI AE ITQPALVAVTS+VVEEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERER+YS+SRLNISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
             DGF+IGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN NG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++F KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 1.6e-179
Identity = 339/372 (91.13%), Postives = 354/372 (95.16%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKPSP 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ ++K + 
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  STHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRKAME 120
            THPK S +  VE  QPI AE ITQPALVAVTS+V+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREYSESRLNISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER+ERERE+S+SR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 TGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGITTPLMAKKTDSR 240
           + DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGKQEQGITTPLMAKKTD R
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKPKSVNLNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVN NGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGR+FGGRVVRATFYDE++F KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of Sed0002078 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 497.3 bits (1279), Expect = 1.1e-140
Identity = 278/387 (71.83%), Postives = 312/387 (80.62%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQGRVKP-- 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR   + KP  
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  -SPSTHPKPSAAPPVELFQPIQAEEITQPALVAVTSSVVEEYDPARPNDYEEYRVEKKRK 120
            +P   P PS +    L    ++    QPALV VTSSV+EEYDPARPNDYEEY+ EKKRK
Sbjct: 61  SAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKKRK 120

Query: 121 AMEAEMRKELERRRQEEEEREKKEREEREREYSE-----SRLNISGEEAWRRRAAK---- 180
           A EAEM++E+++RRQE+EER+K+EREERE+E        SRLNISGEEAW+RRAA     
Sbjct: 121 ATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSGGG 180

Query: 181 SGAIPRSPSPPSTGDGFSIGKSETVGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKQEQGI 240
           SG   RS SPP   DGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWKQGQGLGK EQGI
Sbjct: 181 SGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQGI 240

Query: 241 TTPLMAKKTDSRAGVIVNANDTKS----EKKPKSVNLNGLPTRVLLLRNMVGPGEVDDEL 300
           TTPLMAKKTD RAGVIVNA++ KS    +K  KSVN+NG PTRVLLLRNMVGPG+VDDEL
Sbjct: 241 TTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDDEL 300

Query: 301 EEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGR 360
           E+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGR+FGGR
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 361 VVRATFYDEDKFGKNELAPMPGEVPGF 372
            VRATFYDE+KF KNELAP+PGE+PG+
Sbjct: 361 TVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of Sed0002078 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-07
Identity = 31/100 (31.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 266 TRVLLLRNMVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 325
           T V+ L  +V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F
Sbjct: 471 TTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVF 530

Query: 326 VQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 361
           +++  ++ +T+A   ++GR FGG  V A +Y EDKF + +
Sbjct: 531 LKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGD 570

[Close]

BLAST of Sed0002078 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-07
Identity = 31/100 (31.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 266 TRVLLLRNMVGPGEVDDELE-----EEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 325
           T V+ L  +V   E+ D+ E     E++  E  K+G +T V+I   +    PV    ++F
Sbjct: 449 TTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVF 508

Query: 326 VQFERSEETTKALVDLDGRFFGGRVVRATFYDEDKFGKNE 361
           +++  ++ +T+A   ++GR FGG  V A +Y EDKF + +
Sbjct: 509 LKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGD 548

The following BLAST results are available for this feature:

BLAST of Sed0002078 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003194.1	9.7e-184	93.01	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxim...	[more]
KAG6594427.1	2.4e-182	92.20	DNA-damage-repair/toleration protein, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_023518236.1	7.0e-182	91.73	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita pepo ...	[more]
XP_038882071.1	3.5e-181	92.20	DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]	[more]
XP_022926730.1	4.5e-181	92.20	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita mosch...	[more]

BLAST of Sed0002078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	1.5e-139	71.83	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	1.7e-34	37.16	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	5.1e-34	35.53	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]
Q8T6B9	1.9e-17	33.33	Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster OX=7227 GN=...	[more]
Q2HJG2	9.6e-17	44.79	Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1	[more]

BLAST of Sed0002078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KSL4	4.7e-184	93.01	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]
A0A6J1ELY8	2.2e-181	92.20	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita mos...	[more]
A0A0A0KP45	1.9e-180	91.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A6J1D044	7.0e-180	91.67	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A1S3AYL8	1.6e-179	91.13	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]

BLAST of Sed0002078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	1.1e-140	71.83	D111/G-patch domain-containing protein	[more]
AT4G36690.1	3.2e-07	31.00	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	3.2e-07	31.00	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..60
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 268..349 e-value: 8.0E-27 score: 105.1
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 200..246 e-value: 6.4E-16 score: 68.9
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 205..244 e-value: 1.6E-16 score: 59.9
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 202..248 score: 15.553638
IPR040052	Splicing factor 45	PIRSF	PIRSF031066	SPF45	coord: 3..368 e-value: 2.8E-120 score: 400.3
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..363
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 263..361 e-value: 2.7E-26 score: 93.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 257..353 score: 9.98497
IPR034653	SPF45, RNA recognition motif	CDD	cd12647	RRM_UHM_SPF45	coord: 265..361 e-value: 2.60343E-50 score: 162.057
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 269..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002078.1	Sed0002078.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
biological_process	GO:0043484	regulation of RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding