Sed0002070 (gene) Chayote v1

Overview
NameSed0002070
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L38, putative
LocationLG07: 540059 .. 541285 (+)
RNA-Seq ExpressionSed0002070
SyntenySed0002070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCAAAACAATATATTCTGACGAGACTTAAATTTGATGTATTCTTGAAGTTTTTCTGTTGTTGAGATCTAGGAGTACTCACGTGTTTTTTAATTTTTTTAGTTGTGGGATTGTTCTGTGATCTCGCACATTTTATTTTTTAATTATGGGTTTGTTATGTTACAATCAATTCTAAGACTTTTTGCTCTATATTTTCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGATCTGTGAAAATTATGAGGAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCGCCAGGTTAGATTAACTAACACTACAATTCCTTTTAGTATGATATATTGGTAGGATCTGTAACTTATTTAGAGTAATCTAAATAAAAGTATTCTATCAAGTAAATCTAACTGGTTAAATTAGAAGTATTTCTCAATTTGTTTGTCCACTTTTTGCTTAGAGGTCCATATTCTAGTAGAACATGCTTTGTAATTATCATCTAGGCCTCATTTTAGATTCTTGTTGGGTTTTTTTGGTGTGCTGTTGTATATGTTTTCATTTTTTTCAATGAAAACTCGTTTCTTATATTTAATTAAAAAATACTTGGGATGCTTTGCTAAAATGACTATGAGGATGAAATGGGTATCTCATGATACCATTATATTTGCTTTCATGTGGGTACTTTCATAGCCTCTTGTTCAGTGAACTAAACATTGAGGAGAAACTTAACATTTACTTTTCAACTTTTCCAGGATTGACTGTGCAAGATCTGTAAACGAATGGATTGCAGTTGCCTGGACGATTACAGGAAGAATACTCATTTTTTCTTGTTTTTGATTTTGTGGTTTTTCCAGCTGATTAGAATATGTTGAAGTTAGATTTTGATCGTGTAGTAATCCATATTCTCTTCATTTTCCAGTGAATTTGTTGTCATTGAGAATTGTTGTGCTGAATTTATTATGTGGGGTACCAGTTGATGGTTCAGTCATTCTATTCAAAGGTAGATTTGAAAAGCTCTGCCTAGTTTGTGGGTTATGAAATTTACAACACACTAGATAGGGAAACAAATCTAGTATAATGGTTGGATTTAAATAAGTAAGGCTTCATTTTTTTGAATTTACTTCAATTCTCTGATATGTTTTATCCAAAC

mRNA sequence

ATTGCAAAACAATATATTCTGACGAGACTTAAATTTGATGTATTCTTGAAGTTTTTCTGTTGTTGAGATCTAGGAGTACTCACGTGTTTTTTAATTTTTTTAGTTGTGGGATTGTTCTGTGATCTCGCACATTTTATTTTTTAATTATGGGTTTGTTATGTTACAATCAATTCTAAGACTTTTTGCTCTATATTTTCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGATCTGTGAAAATTATGAGGAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCGCCAGGATTGACTGTGCAAGATCTGTAAACGAATGGATTGCAGTTGCCTGGACGATTACAGGAAGAATACTCATTTTTTCTTGTTTTTGATTTTGTGGTTTTTCCAGCTGATTAGAATATGTTGAAGTTAGATTTTGATCGTGTAGTAATCCATATTCTCTTCATTTTCCAGTGAATTTGTTGTCATTGAGAATTGTTGTGCTGAATTTATTATGTGGGGTACCAGTTGATGGTTCAGTCATTCTATTCAAAGGTAGATTTGAAAAGCTCTGCCTAGTTTGTGGGTTATGAAATTTACAACACACTAGATAGGGAAACAAATCTAGTATAATGGTTGGATTTAAATAAGTAAGGCTTCATTTTTTTGAATTTACTTCAATTCTCTGATATGTTTTATCCAAAC

Coding sequence (CDS)

ATGTTACAATCAATTCTAAGACTTTTTGCTCTATATTTTCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGATCTGTGAAAATTATGAGGAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCGCCAGGATTGACTGTGCAAGATCTGTAA

Protein sequence

MLQSILRLFALYFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
Homology
[Close]
BLAST of Sed0002070 vs. NCBI nr
Match: EEF28545.1 (60S ribosomal protein L38, putative [Ricinus communis])

HSP 1 Score: 137.1 bits (344), Expect = 6.7e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 12 YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 71
          YF PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 26 YFLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 85

Query: 72 SLPPGLTVQDL 83
          SLPPGL+VQDL
Sbjct: 86 SLPPGLSVQDL 96

[Close]
BLAST of Sed0002070 vs. NCBI nr
Match: TXG48864.1 (hypothetical protein EZV62_024739 [Acer yangbiense])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 13  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 72
           FQPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQS
Sbjct: 34  FQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQS 93

Query: 73  LPPGLTVQDL 83
           LPPGL+VQDL
Sbjct: 94  LPPGLSVQDL 103

[Close]
BLAST of Sed0002070 vs. NCBI nr
Match: KAG6767624.1 (hypothetical protein POTOM_028836 [Populus tomentosa])

HSP 1 Score: 136.0 bits (341), Expect = 1.5e-28
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 1   MLQSILRLFALYFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCV 60
           +L   L LF  Y QPKQIHEIKDFLLTARRKDARSVKI RS+D VKFKVRCSKYLYTLCV
Sbjct: 56  VLSMYLFLFFFYTQPKQIHEIKDFLLTARRKDARSVKIKRSRDAVKFKVRCSKYLYTLCV 115

Query: 61  FDSEKADKLKQSLPPGLTVQDL 83
           FD+EKADKLKQSLPPGL+VQDL
Sbjct: 116 FDTEKADKLKQSLPPGLSVQDL 137

[Close]
BLAST of Sed0002070 vs. NCBI nr
Match: KAG5530677.1 (hypothetical protein RHGRI_025592 [Rhododendron griersonianum])

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 14 QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 73
          QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 17 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 76

Query: 74 PPGLTVQDL 83
          PPGL+VQDL
Sbjct: 77 PPGLSVQDL 85

[Close]
BLAST of Sed0002070 vs. NCBI nr
Match: KAA0039935.1 (putative 60S ribosomal protein L38 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 14 QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 73
          QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 4  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63

Query: 74 PPGLTVQDL 83
          PPGL+VQDL
Sbjct: 64 PPGLSVQDL 72

[Close]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-29
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL+VQDL
Sbjct: 62 PGLSVQDL 69

[Close]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-27
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          PKQIHEIKDFLLTARRKDAR+VKI ++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL+VQDL
Sbjct: 62 PGLSVQDL 69

[Close]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          PKQIHEIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL V++L
Sbjct: 62 PGLAVKEL 69

[Close]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match: Q9JJI8 (60S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3)

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-23
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          P++I EIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL V+DL
Sbjct: 62 PGLAVKDL 69

[Close]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-22
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          P++I EIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKA+KLKQSLP
Sbjct: 2  PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL V++L
Sbjct: 62 PGLAVKEL 69

[Close]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match: B9T6H4 (60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1205980 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 12 YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 71
          YF PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ
Sbjct: 26 YFLPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQ 85

Query: 72 SLPPGLTVQDL 83
          SLPPGL+VQDL
Sbjct: 86 SLPPGLSVQDL 96

[Close]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match: A0A5C7GVP2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024739 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.3e-29
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 13  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQS 72
           FQPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQS
Sbjct: 34  FQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDNEKADKLKQS 93

Query: 73  LPPGLTVQDL 83
           LPPGL+VQDL
Sbjct: 94  LPPGLSVQDL 103

[Close]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match: B9RM38 (60S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 14 QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 73
          QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 10 QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 69

Query: 74 PPGLTVQDL 83
          PPGL+VQDL
Sbjct: 70 PPGLSVQDL 78

[Close]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match: A0A6J1IBC7 (60S ribosomal protein L38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471373 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 14 QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 73
          QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 4  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63

Query: 74 PPGLTVQDL 83
          PPGL+VQDL
Sbjct: 64 PPGLSVQDL 72

[Close]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match: A0A5A7TEP5 (Putative 60S ribosomal protein L38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002150 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 14 QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 73
          QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 4  QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 63

Query: 74 PPGLTVQDL 83
          PPGL+VQDL
Sbjct: 64 PPGLSVQDL 72

[Close]
BLAST of Sed0002070 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 130.2 bits (326), Expect = 7.7e-31
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL+VQDL
Sbjct: 62 PGLSVQDL 69

[Close]
BLAST of Sed0002070 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 130.2 bits (326), Expect = 7.7e-31
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 15 PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 74
          PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 2  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 61

Query: 75 PGLTVQDL 83
          PGL+VQDL
Sbjct: 62 PGLSVQDL 69

The following BLAST results are available for this feature:
BLAST of Sed0002070 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF28545.16.7e-2995.7760S ribosomal protein L38, putative [Ricinus communis][more]
TXG48864.11.5e-2895.71hypothetical protein EZV62_024739 [Acer yangbiense][more]
KAG6767624.11.5e-2884.15hypothetical protein POTOM_028836 [Populus tomentosa][more]
KAG5530677.12.6e-2897.10hypothetical protein RHGRI_025592 [Rhododendron griersonianum][more]
KAA0039935.12.6e-2897.10putative 60S ribosomal protein L38 [Cucumis melo var. makuwa][more]
BLAST of Sed0002070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O228601.1e-2992.6560S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1[more]
P462911.3e-2788.2460S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1[more]
Q95V841.0e-2480.8860S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1[more]
Q9JJI85.7e-2376.4760S ribosomal protein L38 OS=Mus musculus OX=10090 GN=Rpl38 PE=1 SV=3[more]
Q32PB91.7e-2275.0060S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4[more]
BLAST of Sed0002070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B9T6H43.3e-2995.7760S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1205980 ... [more]
A0A5C7GVP27.3e-2995.71Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024739 PE=3 SV=1[more]
B9RM381.2e-2897.1060S ribosomal protein L38, putative OS=Ricinus communis OX=3988 GN=RCOM_1077580 ... [more]
A0A6J1IBC71.2e-2897.1060S ribosomal protein L38 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471373... [more]
A0A5A7TEP51.2e-2897.10Putative 60S ribosomal protein L38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
BLAST of Sed0002070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43460.17.7e-3192.65Ribosomal L38e protein family [more]
AT3G59540.17.7e-3192.65Ribosomal L38e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 14..82
e-value: 2.7E-34
score: 119.1
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 15..81
e-value: 1.4E-33
score: 114.7
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 15..82
NoneNo IPR availablePANTHERPTHR10965:SF1460S RIBOSOMAL PROTEIN L38coord: 15..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0002070.1Sed0002070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022618 ribonucleoprotein complex assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome