Sed0002012 (gene) Chayote v1

Overview


Name	Sed0002012
Type	gene
Organism	Sechium edule (Chayote v1)
Description	replication factor C subunit 3-like
Location	LG12: 1661296 .. 1666385 (-)
RNA-Seq Expression	Sed0002012
Synteny	Sed0002012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCACCCCACAACAACAACAACAACCCAACCCCGCCGCCCTTCGCCGCTCCCTCTCGGACTCCAACCCAACTCACCGCATCCGCCGTACCACCACCACCACCATCTCCACCACGTCCTCAAAATCCTCATGGTCCTCAAAGCTAGCCAAACTCCTAGCTCGGCTAGCCCTACTCTCGTCCCCCAACTCGGACCTAACCGAAGAAACCCTAGAAGCCCACAACAAACGAATCAACGACCTCAAATACAGCCCTTACTACCGCGGCCTAACCGATTCCTCCCTAGCCATCAACTACCACCATGGCCCACTCAGCACCCCTGGTGGCCCCCACCGCTATGCCACCTCAGCCACCACAACCCAAACACAAGCCTCCATCTCATCCGTCATGGTTTCCAAACTCAAGCACCTGTGGTCCCCATGCGTACGTGGAAAGACCAATAAGTCTCCACCAAGTACGCACCCTATCGCGACCGTGACTGCCACGACGACGGTGGCGGTTAAGCTGCCACCGTCGTCGGGTTCGTCTGCGGTGGAGAGTGATTACTATATTGAAGAGAAGCTGTTGAGGGAGAGATTAGTGTACCGGCAGCCGAGAGTGGGTGGCGGGGAGGTTGCGGTCGCGGTCGCGGTGGAGACGGAGATGTACACGTGGGGGGACGAGTATAGGCCGAAAGGGCTGGAGGGGTTTATATGCAATAAGAAAAGGGCGTGTGAATTGAAGGAAGTGGTGCGAAAAAGAGGGTGTGGGCATTACATATTTGAAGGGCCGCCGGGAGTTGGGAAGAGGACTATGATTCAAGCTATGCTTAGAGAAGTTTTTGGAGATCGAGCAATGGAGGTCGTGTATTGTTGTTAGTATGACTTTATTAATCTTTTCCCCATATCATTTAGTTACAAAAAAAAAAAAATTCAATTTAGATCCCAACTTCTAAAATTTAACATTTTTACGAATAATATTAATTTTCAATCCATGAAACAAAATTGAAATTACCTAAGAAACAAAACAATGATTAGACGATTAATTTTAGATTTCGATATATTGATTGATTGATTATTTTAGTTTTAAAAAAATAAATGTAAAAGTAAACTAAAAAACATATAACATTATTGAAATGTCAGAAATATTCAATTTTGATAGATAGAGACCAAATTGAAATTAGATCTAAAATTTAAAAGATAACTTTTCCCTTTTTCTCTCTTCTATCTAGTAAAAATATATGTTCAACATCTCATGTTCTAAAAATTAGAAACATGATCGTTTATGGACTTATTCCTTTTTTTTTTTAATTACATTTACTTCAGTAAAAAATATCACGACTCTAATAATATCTTATACGACTTTTTTTTTTATACATCTTGTACGACTTAGTAACAAAGAAATTATGTGTTCGAATTCTGTGGTTTGTGATATATGGTCAAATTATAAAAAAATTAGAGATTAAATGGAATATAAAGTGGTTAAGTTCAAAGACCAAATAGGACACAAAATATTGGAATTAAATAGGCCTTATTCCTTAATATTTGAAAATACTTGATTTTGAAATAGGAATTGAGCTAATTTTTTTTTTCCTCTTTTGTTTCTCACAGATCCAGGAAGTTGTTAGGGTATTTGACTTGAAGGTAAATTTTACTTTCCATCCCTTATATAGATTGCCTATTTCGGAAGTTGAACCTGTTTTTTTAGTTCTATTACAAATTTGCTCTTTATGGATCATACAATTACACATTCTATTCCTCTGTACCTTAAAAAGTGAATTTATCCACTTGAATAATTTTATATAAATTTTGTTTCTTTTGCTTCATATTTTACCTTCCATTTAATTATAAGTTAATTTAGTGATGTGAAATGGGGGTGTTTGGTGTGAACTGGCAGAGTGAAATGGTGGGAAGAATTGAAGTAAGGGTGAAGGAATCACGTAACTATGTGGAAGTCAATTTGTCACAAACCAAAGGCTTTGAGAAACAAGTCATCGTCCAGCTCATCAACGAAGCTCGCTCCCCTTTGCCATGTAATCATGCCAACTGTCGAGGTACGACACACCAGCGATGATTAGTTAACTAATGATATTTGTTTATCAATCAACTATCGACTTAAACATATCTCAATCGGTTAAGACATATCAAAATTTCTGTCTTGTCATTTTTTTTTTTAAAAAATAGGGATTTTTTATGATGCGGGAATTTAGAGCTTTACTCTTCTAAAACTCAGGAGCCATTTTTTTTTTAAAAAAGGAATTTTTTATGATACGGAAATTTAGAACTTTACTCTTCTAAAACCCAGGAGCACCACTAACTCAGATCTTACACTGTGGCACCAAGATACATAGTAGGACCAAAATTAAATTGGGATCCTTTAAAAAATTAATCTGCACGAACACCTTGAACTTGAGACCTGTAGGAGAGCACACATCAAAACCCAGGCGCTACCACTCCAAATTGGGAAGTTGGAGTTGTTCACCCATATACAATCATTTGACTTAATTGTTAGTGTTAACTACATTTAATTCGGTACCTATGTCAGTCTCTCAAGTGCCGAACCTATGAGACAACATTAAAAAAAAGTTCACTAGCAAGTTTCAAATTTAAAATCTAAGAAAAAAAAATACTTTGGAGACTTTAAACCTCTACAAGCTAGGCCGTTTGTTCGAGTTTAGCCATATATTCAACCTAAACATAGCTCGAAGTGATTTATGAGCATTATTATTCGTAAGATTCAAATCTCTTTTTCTTTCAACTAATGAAGGATTATAATATATACACATATACTTAATAATTTGAATATTTATTTTGTATGGTTATTACAGGGATTGTGTTATGTGAAGCAGACCAGCTATCAAATGAAACCCTAATGTATGTAAAATGGGCAATTGAGAGGAACAATGGGTGCAGCAAAATCTTCTTCTGTTGCTCTGATGTCTCCAAGCTTCTCCTTCTTAGCTCTCTCTGCATTCATGTTCACCTTTCCCCACCTTCTAAACAAGAGGTCACAATTAATTTCTTCTTTGTTTTTTTTCATCTCTTTTTTAGAAGAAAAAAGATCAAATTTTGTTAAATTATATACTTCTCTAATGATTTTTAAAAGAAAAGTAGTTCCATTTGATAATAGAAATATTGATTTTACTTTCTTTTTTGAAATTCGACTTATAACCTTTTGATCGAAGATATTATATATTTTTGTACTAGTTGAGTTATGTTCATGTTGGTATATGTTCTTAAAATTTAAGCATACATTAAATACATTTTTAATAGACTATAAAGTTATAAATGTGGGGTGAGCGAACTAAAATTTTAACCCCTAAGATATGTTATACTTACTTAAAAGAAAATAATGATAATAATTTTGAAATCTATTAGATTATTACTTAAAGTTGTGATACATATGAAGAGGTTGAATGTTTGAATCAATTTTTTTTTTATTAACTAAAGTGACTTGAGTGATAATTGACATATTAAAAAGTTTGAATTTTTAACATTCAAATATTGTTGTTAAATTAAAAATAATACTTGTTACTATGCTTAATAATGAAAATAGATTGTAGAAGTTCTAGAATTCATAGCAAAACAAGAAGGATTCGACTTGTCGCATCGATTGGCAGAGATAATCGCCGACAATTCTAAGAACAACCTGCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGGTTAGAAATTAAATTATCAGTTTATTTAAAAGATTTTGAAAATAAATTTGGGATTTGATGAAGAAATTAATGACTTGCAGTCAATTGTTTGAAGAAGATGAGAAAAAATTATTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGTAATTAACTATAATCTCAATCTTCTTAATATTATTTTTGTGAATTTTTATCTACAATTTGTTAGAACTTTCTTCTTTTTTTTCTTTTTTTTTTAACTTTTAAAAAAAGCACTGGTTTATTTGTTCGTGCAGGCTGTATATTGTTCGTGGAAAGCTTAAAAAACTTATTGAACATGATGTCTCTCCCAACTTCATTTTTAAGGTTATTTTATTTTATTTCCATCTTTTCTATCAATTGTTTTTTGACTCTTTCATCCGAACCATTTTTTTTATATTCGTGACTGTAGGAACAGCTTGTATACGCACATTGACTAATGTCACACGATATTAAAAAAAAATGTCATGGAATATACTTGACCTTACAACATTTTGATGTCAAGGAAACTCGTAAGAGATTAAGTCTCAATCACTCAATCAAAATAAATTTTTTATAATAAAATATAGTTACTTTTATTAAAGATTACAATACTATATCACAAGTAAATACTTCTTTTTTTGTCTTTTTTTTAGTACATCAAATCAGATAACCAATCGTGTTACCGACTCATTTGCTATAGTATGCTCCTTTGTAAACTATATTTGGAGGAAGAGAGATTTAAACTTGTAACCTCTTGTATAATTTTTATTTTAATATTATATATACGGTTAAAAATAAAATTGAATTTATGACATTTGCAATTATAAATAAATTCTTTATACAAATGGAGTTATGCTATGTTAGCATTCAATCACTCTTTAAACAAATGTTGCTCCAATCCTATGAATAATTTTTCATTGTCATTTATGCATAATAAGTGTAACGGATTTATGCGCAGACACTAGTAGATGAATTAAAAAAGTTGTTGGACGAAGAATTACAACGCCGAGTTGAAGGTTTCTATGCTGATTATCATGTAAGTTTCTTTTTTTCATTTTATGAGAAATTGAATATTAATTTTGATTGTAAATATATAAAGAATAATAAAGTGGATGATGATTTGAATTTCAGAAAATGGAGGAAAAATCATTTGTTGGTGAAAAAGGCAGTGGGGAAGAGATGGTTATCAAAGGGATGCATGATCCTATGAGAAAGAATGTTAACCACTTCTTAAAGATTGAAGGTAACCTACAAACAATAACACAAAGTTTTTTAAAAAAAGTACACACATCTAAATATTCACTAACTTCATTACTATTTTTTTTTATAATTTTTTTTAATTCGACTTCATTAAAAAATAATAATAATAAAATAAAATAA

mRNA sequence

ATGGCCTCCACCCCACAACAACAACAACAACCCAACCCCGCCGCCCTTCGCCGCTCCCTCTCGGACTCCAACCCAACTCACCGCATCCGCCGTACCACCACCACCACCATCTCCACCACGTCCTCAAAATCCTCATGGTCCTCAAAGCTAGCCAAACTCCTAGCTCGGCTAGCCCTACTCTCGTCCCCCAACTCGGACCTAACCGAAGAAACCCTAGAAGCCCACAACAAACGAATCAACGACCTCAAATACAGCCCTTACTACCGCGGCCTAACCGATTCCTCCCTAGCCATCAACTACCACCATGGCCCACTCAGCACCCCTGGTGGCCCCCACCGCTATGCCACCTCAGCCACCACAACCCAAACACAAGCCTCCATCTCATCCGTCATGGTTTCCAAACTCAAGCACCTGTGGTCCCCATGCGTACGTGGAAAGACCAATAAGTCTCCACCAAGTACGCACCCTATCGCGACCGTGACTGCCACGACGACGGTGGCGGTTAAGCTGCCACCGTCGTCGGGTTCGTCTGCGGTGGAGAGTGATTACTATATTGAAGAGAAGCTGTTGAGGGAGAGATTAGTGTACCGGCAGCCGAGAGTGGGTGGCGGGGAGGTTGCGGTCGCGGTCGCGGTGGAGACGGAGATGTACACGTGGGGGGACGAGTATAGGCCGAAAGGGCTGGAGGGGTTTATATGCAATAAGAAAAGGGCGTGTGAATTGAAGGAAGTGGTGCGAAAAAGAGGGTGTGGGCATTACATATTTGAAGGGCCGCCGGGAGTTGGGAAGAGGACTATGATTCAAGCTATGCTTAGAGAAGTTTTTGGAGATCGAGCAATGGAGATCCAGGAAGTTGTTAGGGTATTTGACTTGAAGAGTGAAATGGTGGGAAGAATTGAAGTAAGGGTGAAGGAATCACGTAACTATGTGGAAGTCAATTTGTCACAAACCAAAGGCTTTGAGAAACAAGTCATCGTCCAGCTCATCAACGAAGCTCGCTCCCCTTTGCCATGTAATCATGCCAACTGTCGAGGGATTGTGTTATGTGAAGCAGACCAGCTATCAAATGAAACCCTAATGTATGTAAAATGGGCAATTGAGAGGAACAATGGGTGCAGCAAAATCTTCTTCTGTTGCTCTGATGTCTCCAAGCTTCTCCTTCTTAGCTCTCTCTGCATTCATGTTCACCTTTCCCCACCTTCTAAACAAGAGATTGTAGAAGTTCTAGAATTCATAGCAAAACAAGAAGGATTCGACTTGTCGCATCGATTGGCAGAGATAATCGCCGACAATTCTAAGAACAACCTGCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAAAAAATTATTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTTAAAAAACTTATTGAACATGATGTCTCTCCCAACTTCATTTTTAAGACACTAGTAGATGAATTAAAAAAGTTGTTGGACGAAGAATTACAACGCCGAGTTGAAGGTTTCTATGCTGATTATCATAAAATGGAGGAAAAATCATTTGTTGGTGAAAAAGGCAGTGGGGAAGAGATGGTTATCAAAGGGATGCATGATCCTATGAGAAAGAATGTTAACCACTTCTTAAAGATTGAAGGTAACCTACAAACAATAACACAAAGTTTTTTAAAAAAAGTACACACATCTAAATATTCACTAACTTCATTACTATTTTTTTTTATAATTTTTTTTAATTCGACTTCATTAAAAAATAATAATAATAAAATAAAATAA

Coding sequence (CDS)

ATGGCCTCCACCCCACAACAACAACAACAACCCAACCCCGCCGCCCTTCGCCGCTCCCTCTCGGACTCCAACCCAACTCACCGCATCCGCCGTACCACCACCACCACCATCTCCACCACGTCCTCAAAATCCTCATGGTCCTCAAAGCTAGCCAAACTCCTAGCTCGGCTAGCCCTACTCTCGTCCCCCAACTCGGACCTAACCGAAGAAACCCTAGAAGCCCACAACAAACGAATCAACGACCTCAAATACAGCCCTTACTACCGCGGCCTAACCGATTCCTCCCTAGCCATCAACTACCACCATGGCCCACTCAGCACCCCTGGTGGCCCCCACCGCTATGCCACCTCAGCCACCACAACCCAAACACAAGCCTCCATCTCATCCGTCATGGTTTCCAAACTCAAGCACCTGTGGTCCCCATGCGTACGTGGAAAGACCAATAAGTCTCCACCAAGTACGCACCCTATCGCGACCGTGACTGCCACGACGACGGTGGCGGTTAAGCTGCCACCGTCGTCGGGTTCGTCTGCGGTGGAGAGTGATTACTATATTGAAGAGAAGCTGTTGAGGGAGAGATTAGTGTACCGGCAGCCGAGAGTGGGTGGCGGGGAGGTTGCGGTCGCGGTCGCGGTGGAGACGGAGATGTACACGTGGGGGGACGAGTATAGGCCGAAAGGGCTGGAGGGGTTTATATGCAATAAGAAAAGGGCGTGTGAATTGAAGGAAGTGGTGCGAAAAAGAGGGTGTGGGCATTACATATTTGAAGGGCCGCCGGGAGTTGGGAAGAGGACTATGATTCAAGCTATGCTTAGAGAAGTTTTTGGAGATCGAGCAATGGAGATCCAGGAAGTTGTTAGGGTATTTGACTTGAAGAGTGAAATGGTGGGAAGAATTGAAGTAAGGGTGAAGGAATCACGTAACTATGTGGAAGTCAATTTGTCACAAACCAAAGGCTTTGAGAAACAAGTCATCGTCCAGCTCATCAACGAAGCTCGCTCCCCTTTGCCATGTAATCATGCCAACTGTCGAGGGATTGTGTTATGTGAAGCAGACCAGCTATCAAATGAAACCCTAATGTATGTAAAATGGGCAATTGAGAGGAACAATGGGTGCAGCAAAATCTTCTTCTGTTGCTCTGATGTCTCCAAGCTTCTCCTTCTTAGCTCTCTCTGCATTCATGTTCACCTTTCCCCACCTTCTAAACAAGAGATTGTAGAAGTTCTAGAATTCATAGCAAAACAAGAAGGATTCGACTTGTCGCATCGATTGGCAGAGATAATCGCCGACAATTCTAAGAACAACCTGCGACAAGCCATTCGATCCTTAGAGGCTTCGTGGAAAAAAAGTCAATTGTTTGAAGAAGATGAGAAAAAATTATTGACGGGTTGGGAAGATGATATTGCAGATGTTGCTAAGAAGATAGTCGAGGAGCAAAGCCCAAAACAGCTGTATATTGTTCGTGGAAAGCTTAAAAAACTTATTGAACATGATGTCTCTCCCAACTTCATTTTTAAGACACTAGTAGATGAATTAAAAAAGTTGTTGGACGAAGAATTACAACGCCGAGTTGAAGGTTTCTATGCTGATTATCATAAAATGGAGGAAAAATCATTTGTTGGTGAAAAAGGCAGTGGGGAAGAGATGGTTATCAAAGGGATGCATGATCCTATGAGAAAGAATGTTAACCACTTCTTAAAGATTGAAGGTAACCTACAAACAATAACACAAAGTTTTTTAAAAAAAGTACACACATCTAAATATTCACTAACTTCATTACTATTTTTTTTTATAATTTTTTTTAATTCGACTTCATTAAAAAATAATAATAATAAAATAAAATAA

Protein sequence

MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALLSSPNSDLTEETLEAHNKRINDLKYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYATSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPPSSGSSAVESDYYIEEKLLRERLVYRQPRVGGGEVAVAVAVETEMYTWGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQRRVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKKVHTSKYSLTSLLFFFIIFFNSTSLKNNNNKIK

Homology

[Close]

BLAST of Sed0002012 vs. NCBI nr
Match: XP_022946202.1 (replication factor C subunit 3-like [Cucurbita moschata])

HSP 1 Score: 794.7 bits (2051), Expect = 5.8e-226
Identity = 430/602 (71.43%), Postives = 482/602 (80.07%), Query Frame = 0


Query: 1   MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALL 60
           MA+T QQ    + ++LRRSLSDSN   R RR  + + +++SSKSSWS+KLAKLLARL L 
Sbjct: 1   MAATQQQPNSSSSSSLRRSLSDSNTRRRQRRRGSISTASSSSKSSWSTKLAKLLARLNLF 60

Query: 61  SSPNSDLTEETLEAHNKRIND-----LKYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYA 120
           S  NSDLTEE+L+AHN+RI+D     LK SPYYRGLTDSSLAINYHHGPL+T  GPH YA
Sbjct: 61  SR-NSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTT--GPHHYA 120

Query: 121 TSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPPSSG 180
           +S TT QTQ S+S  +VSKLK  W+PC+ GK N  PP+     T T TT V      +  
Sbjct: 121 SSTTTAQTQTSLSYAVVSKLKE-WAPCLIGKPNTKPPAHQQYETPTTTTVVGKTTSLAVS 180

Query: 181 SSAVESDYYI---EEKLLRERLVYRQPRVGGGEVAV---AVAVETEMYTWGDEYRPKGLE 240
           SS  + + +    EEKLLRERLV    R GG  V V     A E E YTWGD+YRPK LE
Sbjct: 181 SSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLE 240

Query: 241 GFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEIQEVVRVF 300
            FICN+K ACELK+VV ++GCGHYIFEGPPGVGKRTMIQAMLR+ FG++AME++EV RVF
Sbjct: 241 DFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVF 300

Query: 301 DLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHANCRGIVLC 360
            LKSEMVG IEV+VKES + VEVNLSQTKGFEKQVI QLI E +SPLPCNHA CRGI+LC
Sbjct: 301 ALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRGILLC 360

Query: 361 EADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSKQEIVEVL 420
           EADQLSNETLMYVKWAIERN GCSKIFFCCSDVSKLLLLSS C HVHLSPPSKQEIVEVL
Sbjct: 361 EADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQEIVEVL 420

Query: 421 EFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLTGWEDDIA 480
           E+IAKQ+ FDLS R+AE IADNSKNNLRQAIRSLEASWKKS+LFEEDE KLLTGWEDDIA
Sbjct: 421 EYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIA 480

Query: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQRRVEGFYA 540
           DVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIFKTLVDELKK LDEELQ RVE FYA
Sbjct: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQHRVESFYA 540

Query: 541 DYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKKVHTSKYS 592
           DY+KMEEK FV EKG+GEE VIK +HDPMRKNVNHFLKIE  +      +  + + + Y 
Sbjct: 541 DYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEANKNNYL 598

[Close]

BLAST of Sed0002012 vs. NCBI nr
Match: KAG6597225.1 (Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 793.1 bits (2047), Expect = 1.7e-225
Identity = 428/599 (71.45%), Postives = 481/599 (80.30%), Query Frame = 0


Query: 1   MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALL 60
           MA+T QQ    + ++LRRSLSDSN   R RR  + + +++SSKSSWS+KLAKLLARL L 
Sbjct: 1   MAATQQQPNSSSSSSLRRSLSDSNTRRRQRRRGSISTASSSSKSSWSTKLAKLLARLNLF 60

Query: 61  SSPNSDLTEETLEAHNKRIND-----LKYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYA 120
           S  NSDLTEE+L+AHN+RI+D     LK SPYYRGLTDSSLAINYHHGPL+T  GPH YA
Sbjct: 61  SR-NSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTT--GPHHYA 120

Query: 121 TSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPPSSG 180
           +S TT QTQ S+S  +VSKLK  W+PC+ GK N  PP+     T T TT V      +  
Sbjct: 121 SSTTTAQTQTSLSYAVVSKLKE-WAPCLIGKPNTKPPAHQQYETPTTTTVVGKTTSLAVS 180

Query: 181 SSAVESDYYI---EEKLLRERLVYRQPRVGGGEVAV---AVAVETEMYTWGDEYRPKGLE 240
           SS  + + +    EEKLLRERLV    R GG  V V     A E E YTWGD+YRPK LE
Sbjct: 181 SSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLE 240

Query: 241 GFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEIQEVVRVF 300
            FICN+K ACELK++V ++GCGHYIFEGPPGVGKRTMIQAMLR+ FG++AME++EV RVF
Sbjct: 241 DFICNRKTACELKKLVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVF 300

Query: 301 DLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHANCRGIVLC 360
            LKSEMVG IEV+VKES + VEVNLSQTKGFEKQVI QLI E +SPLPCNHA CRGI+LC
Sbjct: 301 ALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRGILLC 360

Query: 361 EADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSKQEIVEVL 420
           EADQLSNETLMYVKWAIERN GCSKIFFCCSDVSKLLLLSS C HVHLSPPSKQEIVEVL
Sbjct: 361 EADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQEIVEVL 420

Query: 421 EFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLTGWEDDIA 480
           E+IAKQ+ FDLS R+AE IADNSKNNLRQAIRSLEASWKKS+LFEEDE KLLTGWEDDIA
Sbjct: 421 EYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIA 480

Query: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQRRVEGFYA 540
           DVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIFKTLVDELKK LDEELQRRVE FYA
Sbjct: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQRRVESFYA 540

Query: 541 DYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKKVHTSKY 589
           DY+KMEEK FV EKG+GEE VIK +HDPMRKNVNHFLKIE  +      +  + + + Y
Sbjct: 541 DYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEANKNNY 595

[Close]

BLAST of Sed0002012 vs. NCBI nr
Match: XP_022975501.1 (replication factor C subunit 3-like [Cucurbita maxima])

HSP 1 Score: 788.9 bits (2036), Expect = 3.2e-224
Identity = 430/606 (70.96%), Postives = 485/606 (80.03%), Query Frame = 0


Query: 1   MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALL 60
           MA+T QQ    + ++LRRSLSDSN   R RR  + + +++SSKSSWS+KLAKLLARL L 
Sbjct: 1   MAATQQQPNFSSSSSLRRSLSDSNTRRRQRRHWSISTASSSSKSSWSTKLAKLLARLNLF 60

Query: 61  SSPNSDLTEETLEAHNKRIND-----LKYSPYYRGLTDSSLAINYHHGPLST---PGGPH 120
           S  NSDLTEE+L+AHN+RI+D     LK SPYYRGLTDSSLAINYHHGPL+T     GPH
Sbjct: 61  SR-NSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTTHVTTGPH 120

Query: 121 RYATSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPP 180
            YA+S TT QTQ S+S  +VSKLK  W+PC+ GK NK PP+ H   T T TT V      
Sbjct: 121 HYASSTTTAQTQTSLSYAVVSKLKE-WAPCLIGKPNKKPPAHHQHETPTTTTVVGKTTSL 180

Query: 181 SSGSSAVESDYYI---EEKLLRERLVY---RQPRVG----GGEVAVAVAVETEMYTWGDE 240
           ++ SS  + +      EEKLLRERLV    R+ R G    GG  A     E E YTWGD+
Sbjct: 181 ATSSSPEKIERLATEKEEKLLRERLVMYGRREGRSGVGVDGGGEASEKEKEKERYTWGDK 240

Query: 241 YRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEI 300
           YRPK LE FICN++ ACELK+VV ++GCGHYIFEGPPGVGKRTMIQAMLR+ FG++AME+
Sbjct: 241 YRPKVLEDFICNRQTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEV 300

Query: 301 QEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHAN 360
           +EV RVF LKSEMVG IEV+VKES + VEVNLSQTKGFEKQVI QLI E +SPLPCNHA 
Sbjct: 301 KEVGRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHAR 360

Query: 361 CRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSK 420
           CRGI+LCEADQLSNETLMYVKWAIERN GCSKIFFCCSDVSKLLLLSSLC HVHLSPPSK
Sbjct: 361 CRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSLCTHVHLSPPSK 420

Query: 421 QEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLT 480
           QEIVEVLE+IAKQ+ FDLS R+AE IADNSKNNLRQAIRSLEASWKKS+LFEEDE KLLT
Sbjct: 421 QEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLT 480

Query: 481 GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQR 540
           GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIFKTLVDELKK LDEELQR
Sbjct: 481 GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQR 540

Query: 541 RVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKK 589
           RVE FYADY+KMEEK FV +KG+GEE VIK +HDPMRKNVNHFLKIE  +      +  +
Sbjct: 541 RVESFYADYNKMEEKPFVTDKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGE 600

[Close]

BLAST of Sed0002012 vs. NCBI nr
Match: XP_008438224.1 (PREDICTED: replication factor C subunit 3-like [Cucumis melo])

HSP 1 Score: 764.2 bits (1972), Expect = 8.4e-217
Identity = 432/607 (71.17%), Postives = 486/607 (80.07%), Query Frame = 0


Query: 3   STPQQQQQPNPAALRRSLSDSNPTHRIRRT-TTTTISTTSSKSSWSSKLAKLLARLALLS 62
           +T QQ QQP   +LRRSLSDSN  HR RR+    TISTTSSKSSWSSKL KLLARLALLS
Sbjct: 2   ATQQQLQQP---SLRRSLSDSN--HRRRRSRRRATISTTSSKSSWSSKLGKLLARLALLS 61

Query: 63  SPNSDLTEETLEAHNKRINDL-------KYSPYYRGLTDSSLAINYHHGPLSTPGGPHRY 122
             +SDLTEE+LEAHNKRINDL       K SPYYRGLTDSSLAINYHHGPL++      Y
Sbjct: 62  R-DSDLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVTY 121

Query: 123 ATSATTTQTQASISSVMVSKLKHLWSPCVR-GKTNKSPPSTHP----------IATVTAT 182
           ATSA  + TQ+SI    VSK K  W+PC+R  +  + PP T P          I TVT +
Sbjct: 122 ATSAAPS-TQSSI----VSKFKEYWAPCLRKQQQQQQPPHTTPHKVPPRQHQRIQTVTTS 181

Query: 183 TTVAVKLP-PSSGSSAVESDYYIE---------EKLLRERLVY-----RQPR-----VGG 242
           TTV  K    SSGS++  +++  E         +KLLRERLV      R+ R      GG
Sbjct: 182 TTVVTKATWFSSGSTSASANFKEEMSSDEMMTKKKLLRERLVVSNGGERRDRGGGSGSGG 241

Query: 243 GEVAVAVAVETEMYTWGDEYRPKGLEGFICNKKRACELKEVVRKRGCGH-YIFEGPPGVG 302
           G V V   +E E Y+WGD YRPK LE FICNKK A ELKE+V+++GCGH YIFEG PGVG
Sbjct: 242 GGVVVVEEMEKERYSWGDNYRPKFLEDFICNKKTAIELKEMVKEKGCGHYYIFEGAPGVG 301

Query: 303 KRTMIQAMLREVFGDRAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEK 362
           KRTMIQAMLRE FG++++EI+EVV+VFDLKSEM+G IEV+VKES +YVEVN+SQTKGFEK
Sbjct: 302 KRTMIQAMLREAFGNQSVEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEVNMSQTKGFEK 361

Query: 363 QVIVQLINEARSPLPCNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDV 422
           QVIVQL+ E+ SPLPCNHANCRGI+LCEADQLSNETLMYVKWAIERN GC+KIFFCC+D 
Sbjct: 362 QVIVQLMKESHSPLPCNHANCRGILLCEADQLSNETLMYVKWAIERNKGCTKIFFCCTDA 421

Query: 423 SKLLLLSSLCIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRS 482
           SKL LLSS+C  VHLSPPSKQEIVEVLEFIAKQ+GFDLS RLAE IADNSKNNLRQAIRS
Sbjct: 422 SKLHLLSSVCTLVHLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRS 481

Query: 483 LEASWKKSQLFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPN 542
           LEASWKKSQLF+EDE KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPN
Sbjct: 482 LEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPN 541

Query: 543 FIFKTLVDELKKLLDEELQRRVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNV 570
           FIF+TLVDELKK LDEELQRRVEGFYADY+K+EEK+FV E+GSGEE V+KG +DP+RKNV
Sbjct: 542 FIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGSGEETVVKGQNDPVRKNV 597

[Close]

BLAST of Sed0002012 vs. NCBI nr
Match: KAA0049072.1 (replication factor C subunit 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 755.7 bits (1950), Expect = 3.0e-214
Identity = 422/590 (71.53%), Postives = 474/590 (80.34%), Query Frame = 0


Query: 22  DSNPTHRIRRT-TTTTISTTSSKSSWSSKLAKLLARLALLSSPNSDLTEETLEAHNKRIN 81
           DSN  HR RR+    TISTTSSKSSWSSKL KLLARLALLS  +SDLTEE+LEAHNKRIN
Sbjct: 4   DSN--HRRRRSRRRATISTTSSKSSWSSKLGKLLARLALLSR-DSDLTEESLEAHNKRIN 63

Query: 82  DL-------KYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYATSATTTQTQASISSVMVS 141
           DL       K SPYYRGLTDSSLAINYHHGPL++      YATSA  + TQ+SI    VS
Sbjct: 64  DLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVTYATSAAPS-TQSSI----VS 123

Query: 142 KLKHLWSPCVR-GKTNKSPPSTHP----------IATVTATTTVAVKLP-PSSGSSAVES 201
           K K  W+PC+R  +  + PP T P          I TVT +TTV  K    SSGS++  +
Sbjct: 124 KFKEYWAPCLRKQQQQQQPPHTTPHKVPPRQHQRIQTVTTSTTVVTKATWFSSGSTSASA 183

Query: 202 DYYIE---------EKLLRERLVY-----RQPR-----VGGGEVAVAVAVETEMYTWGDE 261
           ++  E         +KLLRERLV      R+ R      GGG V V   +E E Y+WGD 
Sbjct: 184 NFKEEMSSDEMMTKKKLLRERLVVSNGGERRDRGGGSGSGGGGVVVVEEMEKERYSWGDN 243

Query: 262 YRPKGLEGFICNKKRACELKEVVRKRGCGH-YIFEGPPGVGKRTMIQAMLREVFGDRAME 321
           YRPK LE FICNKK A ELKE+V+++GCGH YIFEG PGVGKRTMIQAMLRE FG++++E
Sbjct: 244 YRPKFLEDFICNKKTAIELKEMVKEKGCGHYYIFEGAPGVGKRTMIQAMLREAFGNQSVE 303

Query: 322 IQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHA 381
           I+EVV+VFDLKSEM+G IEV+VKES +YVEVN+SQTKGFEKQVIVQL+ E+ SPLPCNHA
Sbjct: 304 IKEVVKVFDLKSEMLGSIEVKVKESSHYVEVNMSQTKGFEKQVIVQLMKESHSPLPCNHA 363

Query: 382 NCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPS 441
           NCRGI+LCEADQLSNETLMYVKWAIERN GC+KIFFCC+D SKL LLSS+C  VHLSPPS
Sbjct: 364 NCRGILLCEADQLSNETLMYVKWAIERNKGCTKIFFCCTDASKLHLLSSVCTLVHLSPPS 423

Query: 442 KQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLL 501
           KQEIVEVLEFIAKQ+GFDLS RLAE IADNSKNNLRQAIRSLEASWKKSQLF+EDE KLL
Sbjct: 424 KQEIVEVLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLL 483

Query: 502 TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQ 561
           TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIF+TLVDELKK LDEELQ
Sbjct: 484 TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQ 543

Query: 562 RRVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGN 572
           RRVEGFYADY+K+EEK+FV E+GSGEE V+KG +DP+RKNVNHFLKIEGN
Sbjct: 544 RRVEGFYADYYKLEEKAFVSERGSGEETVVKGQNDPVRKNVNHFLKIEGN 585

[Close]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-44
Identity = 115/324 (35.49%), Postives = 192/324 (59.26%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W D+YRPK L+  I ++  A +LK++V ++ C H +F GP G GK+T+I A+L++++G  
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 279 AMEIQEVVRVF--DLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQ-LINEARSP 338
           A +++   R +  D  S  +  +E+    S N+VE+  S   GF+ + IVQ +I E    
Sbjct: 63  AEKVKVENRAWKVDAGSRTID-LELTTLSSTNHVELTPSDA-GFQDRYIVQEIIKEMAKN 122

Query: 339 LPCNHANCRG---IVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSL 398
            P +    +G   +VL E D+LS E    ++  +E+ +   ++  CC+  SK+   + S 
Sbjct: 123 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 182

Query: 399 CIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQ 458
           C++V ++ PS++EIV+VLEF+AK+E   L    A  IA+ S  +LR+AI SLE    ++ 
Sbjct: 183 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 242

Query: 459 LFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDE 518
            F  ++      WE+ +A++A  +++EQSPK+L+ VRGK+ +L+ + + P  I K L+ E
Sbjct: 243 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 302

Query: 519 LKKLLDEELQRRVEGFYADY-HKM 535
           L K LD EL+  V  + A Y H+M
Sbjct: 303 LLKKLDSELKLEVCHWAAYYEHRM 324

[Close]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-39
Identity = 105/323 (32.51%), Postives = 179/323 (55.42%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W D+YRPK L+    + + A  LK++V ++ C H +F GP G GK+T++ A+++++FG  
Sbjct: 3   WVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFGAG 62

Query: 279 A--MEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPL 338
           A  ++++      D  S  +  IE+ +  S ++VE+N S     ++ V+ ++I E     
Sbjct: 63  ADKVKMENKTWKIDTGSRNI-EIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNR 122

Query: 339 PCNHANCRG---IVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLC 398
           P +    R    +VL E D+LS E    ++  +E+ +   ++  CC+  SK+   + S C
Sbjct: 123 PIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRC 182

Query: 399 IHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQL 458
           ++V ++ PS+ +IV+VLEFI K+E   L    A  IA  S  NLR+AI   E    +   
Sbjct: 183 LNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYP 242

Query: 459 FEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDEL 518
           F  ++      WE  ++++A  I++EQSPK+L+ VR K  +L+ + + P  I K L+ EL
Sbjct: 243 FTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAEL 302

Query: 519 KKLLDEELQRRVEGFYADY-HKM 535
            K LD +L+  +  + A Y HKM
Sbjct: 303 LKKLDSDLKHEICHWAAHYEHKM 324

[Close]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot
Match: Q54BN3 (Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=rfc3 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 9.5e-38
Identity = 102/329 (31.00%), Postives = 176/329 (53.50%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W D+Y+P  L+    +   +  LK +++     H +  GP G GK+T I A+L+E++G  
Sbjct: 3   WIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGPN 62

Query: 279 AMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPC 338
           A++++   R F   +     I++    S  ++E+N  +   +++ VI  +I E     P 
Sbjct: 63  ALKLKIDHRTFKHPTSS-KNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 122

Query: 339 NHANC---RGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLCIH 398
           +  +    + ++L E D+LS +    ++  +E+     ++  CC   +K++  + S C+ 
Sbjct: 123 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 182

Query: 399 VHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFE 458
           + +  PS++EI +VL  +A  E FDL  +LA  +A  S  NLR A+  LE+   K   F+
Sbjct: 183 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 242

Query: 459 EDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKK 518
             E  LL  WE+ I+ + K   EEQSP +L IVRGKL +L+ H + P  IFKTL+ E+ K
Sbjct: 243 STELPLL-DWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK 302

Query: 519 LLDEELQRRVEGFYADYHKMEEKSFVGEK 544
            LD  ++  +   +A Y+  E +S +G K
Sbjct: 303 KLDHNMKFEII-HWASYY--EHRSQIGSK 326

[Close]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot
Match: Q8R323 (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 5.4e-33
Identity = 93/325 (28.62%), Postives = 171/325 (52.62%), Query Frame = 0


Query: 216 MYTWGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVF 275
           M  W D+YRP  L     +K++A +L+ +V+     H +  GP G GK+T I  +LRE++
Sbjct: 1   MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 276 GDRAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLIN---EA 335
           G    +++   +     S+   +IE+    S  ++EVN S     ++ VI +++    ++
Sbjct: 61  GIGVEKLRIEHQTITTPSKK--KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQS 120

Query: 336 RSPLPCNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSL 395
           +     +  + + ++L E D+L+ +    ++  +E+     ++  CC+  SK++  + S 
Sbjct: 121 QQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSR 180

Query: 396 CIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQ 455
           C+ V +  PS ++I  VL  + ++EG  L   LA  +A+ S  NLR+A+   EA   +  
Sbjct: 181 CLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQY 240

Query: 456 LFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDE 515
            F ED++   T WE  + + A  IV +Q+P++L  VRG+L +L+ H + P  I K L+ E
Sbjct: 241 PFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSE 300

Query: 516 LKKLLDEELQRRVEGFYADY-HKME 536
           L    D +L+  V    A Y H+++
Sbjct: 301 LLHNCDGQLKGEVAQMAAYYEHRLQ 323

[Close]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-32
Identity = 93/325 (28.62%), Postives = 172/325 (52.92%), Query Frame = 0


Query: 216 MYTWGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVF 275
           M  W D+YRP  L     +K++A +L+ +V+     H +  GP G GK+T I  +LRE++
Sbjct: 1   MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 276 GDRAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLIN---EA 335
           G    +++   +     S+   +IE+    S  ++EVN S     ++ VI +++    ++
Sbjct: 61  GVGVEKLRIEHQTITTPSKK--KIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQS 120

Query: 336 RSPLPCNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSL 395
           +     +  + + ++L E D+L+ +    ++  +E+     ++  CC+  SK++  + S 
Sbjct: 121 QQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSR 180

Query: 396 CIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQ 455
           C+ V +  PS ++I  VL  + K+EG +L  +LA  +A+ S  NLR+A+   EA   +  
Sbjct: 181 CLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQY 240

Query: 456 LFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDE 515
            F  D++   T WE  + + A  IV +Q+P++L  VRG+L +L+ H + P  I K L+ E
Sbjct: 241 PFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSE 300

Query: 516 LKKLLDEELQRRVEGFYADY-HKME 536
           L    D +L+  V    A Y H+++
Sbjct: 301 LLHNCDGQLKGEVAQMAAYYEHRLQ 323

[Close]

BLAST of Sed0002012 vs. ExPASy TrEMBL
Match: A0A6J1G337 (replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111450354 PE=4 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 2.8e-226
Identity = 430/602 (71.43%), Postives = 482/602 (80.07%), Query Frame = 0


Query: 1   MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALL 60
           MA+T QQ    + ++LRRSLSDSN   R RR  + + +++SSKSSWS+KLAKLLARL L 
Sbjct: 1   MAATQQQPNSSSSSSLRRSLSDSNTRRRQRRRGSISTASSSSKSSWSTKLAKLLARLNLF 60

Query: 61  SSPNSDLTEETLEAHNKRIND-----LKYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYA 120
           S  NSDLTEE+L+AHN+RI+D     LK SPYYRGLTDSSLAINYHHGPL+T  GPH YA
Sbjct: 61  SR-NSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTT--GPHHYA 120

Query: 121 TSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPPSSG 180
           +S TT QTQ S+S  +VSKLK  W+PC+ GK N  PP+     T T TT V      +  
Sbjct: 121 SSTTTAQTQTSLSYAVVSKLKE-WAPCLIGKPNTKPPAHQQYETPTTTTVVGKTTSLAVS 180

Query: 181 SSAVESDYYI---EEKLLRERLVYRQPRVGGGEVAV---AVAVETEMYTWGDEYRPKGLE 240
           SS  + + +    EEKLLRERLV    R GG  V V     A E E YTWGD+YRPK LE
Sbjct: 181 SSPEKIERWATEKEEKLLRERLVMYGRREGGSGVGVDGGGEAAEKERYTWGDKYRPKVLE 240

Query: 241 GFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEIQEVVRVF 300
            FICN+K ACELK+VV ++GCGHYIFEGPPGVGKRTMIQAMLR+ FG++AME++EV RVF
Sbjct: 241 DFICNRKTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEVKEVDRVF 300

Query: 301 DLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHANCRGIVLC 360
            LKSEMVG IEV+VKES + VEVNLSQTKGFEKQVI QLI E +SPLPCNHA CRGI+LC
Sbjct: 301 ALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRGILLC 360

Query: 361 EADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSKQEIVEVL 420
           EADQLSNETLMYVKWAIERN GCSKIFFCCSDVSKLLLLSS C HVHLSPPSKQEIVEVL
Sbjct: 361 EADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQEIVEVL 420

Query: 421 EFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLTGWEDDIA 480
           E+IAKQ+ FDLS R+AE IADNSKNNLRQAIRSLEASWKKS+LFEEDE KLLTGWEDDIA
Sbjct: 421 EYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIA 480

Query: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQRRVEGFYA 540
           DVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIFKTLVDELKK LDEELQ RVE FYA
Sbjct: 481 DVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQHRVESFYA 540

Query: 541 DYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKKVHTSKYS 592
           DY+KMEEK FV EKG+GEE VIK +HDPMRKNVNHFLKIE  +      +  + + + Y 
Sbjct: 541 DYNKMEEKPFVTEKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGEANKNNYL 598

[Close]

BLAST of Sed0002012 vs. ExPASy TrEMBL
Match: A0A6J1IEE5 (replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 PE=4 SV=1)

HSP 1 Score: 788.9 bits (2036), Expect = 1.5e-224
Identity = 430/606 (70.96%), Postives = 485/606 (80.03%), Query Frame = 0


Query: 1   MASTPQQQQQPNPAALRRSLSDSNPTHRIRRTTTTTISTTSSKSSWSSKLAKLLARLALL 60
           MA+T QQ    + ++LRRSLSDSN   R RR  + + +++SSKSSWS+KLAKLLARL L 
Sbjct: 1   MAATQQQPNFSSSSSLRRSLSDSNTRRRQRRHWSISTASSSSKSSWSTKLAKLLARLNLF 60

Query: 61  SSPNSDLTEETLEAHNKRIND-----LKYSPYYRGLTDSSLAINYHHGPLST---PGGPH 120
           S  NSDLTEE+L+AHN+RI+D     LK SPYYRGLTDSSLAINYHHGPL+T     GPH
Sbjct: 61  SR-NSDLTEESLQAHNERIDDLDKTPLKSSPYYRGLTDSSLAINYHHGPLTTTHVTTGPH 120

Query: 121 RYATSATTTQTQASISSVMVSKLKHLWSPCVRGKTNKSPPSTHPIATVTATTTVAVKLPP 180
            YA+S TT QTQ S+S  +VSKLK  W+PC+ GK NK PP+ H   T T TT V      
Sbjct: 121 HYASSTTTAQTQTSLSYAVVSKLKE-WAPCLIGKPNKKPPAHHQHETPTTTTVVGKTTSL 180

Query: 181 SSGSSAVESDYYI---EEKLLRERLVY---RQPRVG----GGEVAVAVAVETEMYTWGDE 240
           ++ SS  + +      EEKLLRERLV    R+ R G    GG  A     E E YTWGD+
Sbjct: 181 ATSSSPEKIERLATEKEEKLLRERLVMYGRREGRSGVGVDGGGEASEKEKEKERYTWGDK 240

Query: 241 YRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDRAMEI 300
           YRPK LE FICN++ ACELK+VV ++GCGHYIFEGPPGVGKRTMIQAMLR+ FG++AME+
Sbjct: 241 YRPKVLEDFICNRQTACELKKVVEEKGCGHYIFEGPPGVGKRTMIQAMLRQAFGEQAMEV 300

Query: 301 QEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHAN 360
           +EV RVF LKSEMVG IEV+VKES + VEVNLSQTKGFEKQVI QLI E +SPLPCNHA 
Sbjct: 301 KEVGRVFALKSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHAR 360

Query: 361 CRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSK 420
           CRGI+LCEADQLSNETLMYVKWAIERN GCSKIFFCCSDVSKLLLLSSLC HVHLSPPSK
Sbjct: 361 CRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSLCTHVHLSPPSK 420

Query: 421 QEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLT 480
           QEIVEVLE+IAKQ+ FDLS R+AE IADNSKNNLRQAIRSLEASWKKS+LFEEDE KLLT
Sbjct: 421 QEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLT 480

Query: 481 GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQR 540
           GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIFKTLVDELKK LDEELQR
Sbjct: 481 GWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDEELQR 540

Query: 541 RVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGNLQTITQSFLKK 589
           RVE FYADY+KMEEK FV +KG+GEE VIK +HDPMRKNVNHFLKIE  +      +  +
Sbjct: 541 RVESFYADYNKMEEKPFVTDKGNGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSCYKGE 600

[Close]

BLAST of Sed0002012 vs. ExPASy TrEMBL
Match: A0A1S3AWH3 (replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4 SV=1)

HSP 1 Score: 764.2 bits (1972), Expect = 4.1e-217
Identity = 432/607 (71.17%), Postives = 486/607 (80.07%), Query Frame = 0


Query: 3   STPQQQQQPNPAALRRSLSDSNPTHRIRRT-TTTTISTTSSKSSWSSKLAKLLARLALLS 62
           +T QQ QQP   +LRRSLSDSN  HR RR+    TISTTSSKSSWSSKL KLLARLALLS
Sbjct: 2   ATQQQLQQP---SLRRSLSDSN--HRRRRSRRRATISTTSSKSSWSSKLGKLLARLALLS 61

Query: 63  SPNSDLTEETLEAHNKRINDL-------KYSPYYRGLTDSSLAINYHHGPLSTPGGPHRY 122
             +SDLTEE+LEAHNKRINDL       K SPYYRGLTDSSLAINYHHGPL++      Y
Sbjct: 62  R-DSDLTEESLEAHNKRINDLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVTY 121

Query: 123 ATSATTTQTQASISSVMVSKLKHLWSPCVR-GKTNKSPPSTHP----------IATVTAT 182
           ATSA  + TQ+SI    VSK K  W+PC+R  +  + PP T P          I TVT +
Sbjct: 122 ATSAAPS-TQSSI----VSKFKEYWAPCLRKQQQQQQPPHTTPHKVPPRQHQRIQTVTTS 181

Query: 183 TTVAVKLP-PSSGSSAVESDYYIE---------EKLLRERLVY-----RQPR-----VGG 242
           TTV  K    SSGS++  +++  E         +KLLRERLV      R+ R      GG
Sbjct: 182 TTVVTKATWFSSGSTSASANFKEEMSSDEMMTKKKLLRERLVVSNGGERRDRGGGSGSGG 241

Query: 243 GEVAVAVAVETEMYTWGDEYRPKGLEGFICNKKRACELKEVVRKRGCGH-YIFEGPPGVG 302
           G V V   +E E Y+WGD YRPK LE FICNKK A ELKE+V+++GCGH YIFEG PGVG
Sbjct: 242 GGVVVVEEMEKERYSWGDNYRPKFLEDFICNKKTAIELKEMVKEKGCGHYYIFEGAPGVG 301

Query: 303 KRTMIQAMLREVFGDRAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEK 362
           KRTMIQAMLRE FG++++EI+EVV+VFDLKSEM+G IEV+VKES +YVEVN+SQTKGFEK
Sbjct: 302 KRTMIQAMLREAFGNQSVEIKEVVKVFDLKSEMLGSIEVKVKESSHYVEVNMSQTKGFEK 361

Query: 363 QVIVQLINEARSPLPCNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDV 422
           QVIVQL+ E+ SPLPCNHANCRGI+LCEADQLSNETLMYVKWAIERN GC+KIFFCC+D 
Sbjct: 362 QVIVQLMKESHSPLPCNHANCRGILLCEADQLSNETLMYVKWAIERNKGCTKIFFCCTDA 421

Query: 423 SKLLLLSSLCIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRS 482
           SKL LLSS+C  VHLSPPSKQEIVEVLEFIAKQ+GFDLS RLAE IADNSKNNLRQAIRS
Sbjct: 422 SKLHLLSSVCTLVHLSPPSKQEIVEVLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRS 481

Query: 483 LEASWKKSQLFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPN 542
           LEASWKKSQLF+EDE KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPN
Sbjct: 482 LEASWKKSQLFDEDENKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPN 541

Query: 543 FIFKTLVDELKKLLDEELQRRVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNV 570
           FIF+TLVDELKK LDEELQRRVEGFYADY+K+EEK+FV E+GSGEE V+KG +DP+RKNV
Sbjct: 542 FIFRTLVDELKKFLDEELQRRVEGFYADYYKLEEKAFVSERGSGEETVVKGQNDPVRKNV 597

[Close]

BLAST of Sed0002012 vs. ExPASy TrEMBL
Match: A0A5A7TZV7 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003010 PE=4 SV=1)

HSP 1 Score: 755.7 bits (1950), Expect = 1.5e-214
Identity = 422/590 (71.53%), Postives = 474/590 (80.34%), Query Frame = 0


Query: 22  DSNPTHRIRRT-TTTTISTTSSKSSWSSKLAKLLARLALLSSPNSDLTEETLEAHNKRIN 81
           DSN  HR RR+    TISTTSSKSSWSSKL KLLARLALLS  +SDLTEE+LEAHNKRIN
Sbjct: 4   DSN--HRRRRSRRRATISTTSSKSSWSSKLGKLLARLALLSR-DSDLTEESLEAHNKRIN 63

Query: 82  DL-------KYSPYYRGLTDSSLAINYHHGPLSTPGGPHRYATSATTTQTQASISSVMVS 141
           DL       K SPYYRGLTDSSLAINYHHGPL++      YATSA  + TQ+SI    VS
Sbjct: 64  DLDTLEKTPKSSPYYRGLTDSSLAINYHHGPLNSTPYNVTYATSAAPS-TQSSI----VS 123

Query: 142 KLKHLWSPCVR-GKTNKSPPSTHP----------IATVTATTTVAVKLP-PSSGSSAVES 201
           K K  W+PC+R  +  + PP T P          I TVT +TTV  K    SSGS++  +
Sbjct: 124 KFKEYWAPCLRKQQQQQQPPHTTPHKVPPRQHQRIQTVTTSTTVVTKATWFSSGSTSASA 183

Query: 202 DYYIE---------EKLLRERLVY-----RQPR-----VGGGEVAVAVAVETEMYTWGDE 261
           ++  E         +KLLRERLV      R+ R      GGG V V   +E E Y+WGD 
Sbjct: 184 NFKEEMSSDEMMTKKKLLRERLVVSNGGERRDRGGGSGSGGGGVVVVEEMEKERYSWGDN 243

Query: 262 YRPKGLEGFICNKKRACELKEVVRKRGCGH-YIFEGPPGVGKRTMIQAMLREVFGDRAME 321
           YRPK LE FICNKK A ELKE+V+++GCGH YIFEG PGVGKRTMIQAMLRE FG++++E
Sbjct: 244 YRPKFLEDFICNKKTAIELKEMVKEKGCGHYYIFEGAPGVGKRTMIQAMLREAFGNQSVE 303

Query: 322 IQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHA 381
           I+EVV+VFDLKSEM+G IEV+VKES +YVEVN+SQTKGFEKQVIVQL+ E+ SPLPCNHA
Sbjct: 304 IKEVVKVFDLKSEMLGSIEVKVKESSHYVEVNMSQTKGFEKQVIVQLMKESHSPLPCNHA 363

Query: 382 NCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPS 441
           NCRGI+LCEADQLSNETLMYVKWAIERN GC+KIFFCC+D SKL LLSS+C  VHLSPPS
Sbjct: 364 NCRGILLCEADQLSNETLMYVKWAIERNKGCTKIFFCCTDASKLHLLSSVCTLVHLSPPS 423

Query: 442 KQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLL 501
           KQEIVEVLEFIAKQ+GFDLS RLAE IADNSKNNLRQAIRSLEASWKKSQLF+EDE KLL
Sbjct: 424 KQEIVEVLEFIAKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLL 483

Query: 502 TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQ 561
           TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIF+TLVDELKK LDEELQ
Sbjct: 484 TGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQ 543

Query: 562 RRVEGFYADYHKMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGN 572
           RRVEGFYADY+K+EEK+FV E+GSGEE V+KG +DP+RKNVNHFLKIEGN
Sbjct: 544 RRVEGFYADYYKLEEKAFVSERGSGEETVVKGQNDPVRKNVNHFLKIEGN 585

[Close]

BLAST of Sed0002012 vs. ExPASy TrEMBL
Match: A0A5D3D1K1 (Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003550 PE=4 SV=1)

HSP 1 Score: 665.2 bits (1715), Expect = 2.6e-187
Identity = 362/519 (69.75%), Postives = 409/519 (78.81%), Query Frame = 0


Query: 85  SPYYRGLTDSSLAINYHHGPLSTPGGPHRYATSATTTQTQASISSVMVSKLKHLWSPCVR 144
           +PYYRGLTDSSLAINYHHGPL++      YATSA  + TQ+SI    VSK K  W+PC+R
Sbjct: 17  TPYYRGLTDSSLAINYHHGPLNSTPYNVTYATSAAPS-TQSSI----VSKFKEYWAPCLR 76

Query: 145 -GKTNKSPPSTHP----------IATVTATTTVAVKLP-PSSGSSAVESDYYIE------ 204
             +  + PP T P          I TVT +TTV  K    SSGS++  +++  E      
Sbjct: 77  KQQQQQQPPHTTPHKVPPRQHQRIQTVTTSTTVVTKATWFSSGSTSASANFKEEMSSDEM 136

Query: 205 ---EKLLRERLVY-----RQPR-----VGGGEVAVAVAVETEMYTWGDEYRPKGLEGFIC 264
              +KLLRERLV      R+ R      GGG V V   +E E Y+WGD YRPK LE FIC
Sbjct: 137 MTKKKLLRERLVVSNGGERRDRGGGSGSGGGGVVVVEEMEKERYSWGDNYRPKFLEDFIC 196

Query: 265 NKKRACELKEVVRKRGCGH-YIFEGPPGVGKRTMIQAMLREVFGDRAMEIQEVVRVFDLK 324
           NKK A ELKE+V+++GCGH YIFEG PGVGKRTMIQAMLRE FG++++E           
Sbjct: 197 NKKTAIELKEMVKEKGCGHYYIFEGAPGVGKRTMIQAMLREAFGNQSVE----------- 256

Query: 325 SEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPCNHANCRGIVLCEAD 384
           SEM+G IEV+VKES +YVEVN+SQTKGFEKQVIVQL+ E+ SPLPCNHANCRGI LCEAD
Sbjct: 257 SEMLGSIEVKVKESSHYVEVNMSQTKGFEKQVIVQLMKESHSPLPCNHANCRGISLCEAD 316

Query: 385 QLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLLLLSSLCIHVHLSPPSKQEIVEVLEFI 444
           QLSNETLMYVKWAIERN GC+KIFFCC+D SKL LLSS+C  VHLSPPSKQEIVEVLEFI
Sbjct: 317 QLSNETLMYVKWAIERNKGCTKIFFCCTDASKLHLLSSVCTLVHLSPPSKQEIVEVLEFI 376

Query: 445 AKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQLFEEDEKKLLTGWEDDIADVA 504
           AKQ+GFDLS RLAE IADNSKNNLRQAIRSLEASWKKSQLF+EDE KLLTGWEDDIADVA
Sbjct: 377 AKQQGFDLSKRLAERIADNSKNNLRQAIRSLEASWKKSQLFDEDENKLLTGWEDDIADVA 436

Query: 505 KKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDELKKLLDEELQRRVEGFYADYH 564
           KKIVEEQSPKQLYIVRGKLKKLIE+DVSPNFIF+TLVDELKK LDEELQRRVEGFYADY+
Sbjct: 437 KKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFRTLVDELKKFLDEELQRRVEGFYADYY 496

Query: 565 KMEEKSFVGEKGSGEEMVIKGMHDPMRKNVNHFLKIEGN 572
           K+EEK+FV E+GSGEE V+KG +DP+RKNVNHFLKIEGN
Sbjct: 497 KLEEKAFVSERGSGEETVVKGQNDPVRKNVNHFLKIEGN 519

[Close]

BLAST of Sed0002012 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 183.0 bits (463), Expect = 7.5e-46
Identity = 115/324 (35.49%), Postives = 192/324 (59.26%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W D+YRPK L+  I ++  A +LK++V ++ C H +F GP G GK+T+I A+L++++G  
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 279 AMEIQEVVRVF--DLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQ-LINEARSP 338
           A +++   R +  D  S  +  +E+    S N+VE+  S   GF+ + IVQ +I E    
Sbjct: 63  AEKVKVENRAWKVDAGSRTID-LELTTLSSTNHVELTPSDA-GFQDRYIVQEIIKEMAKN 122

Query: 339 LPCNHANCRG---IVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSL 398
            P +    +G   +VL E D+LS E    ++  +E+ +   ++  CC+  SK+   + S 
Sbjct: 123 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 182

Query: 399 CIHVHLSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEASWKKSQ 458
           C++V ++ PS++EIV+VLEF+AK+E   L    A  IA+ S  +LR+AI SLE    ++ 
Sbjct: 183 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 242

Query: 459 LFEEDEKKLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEHDVSPNFIFKTLVDE 518
            F  ++      WE+ +A++A  +++EQSPK+L+ VRGK+ +L+ + + P  I K L+ E
Sbjct: 243 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 302

Query: 519 LKKLLDEELQRRVEGFYADY-HKM 535
           L K LD EL+  V  + A Y H+M
Sbjct: 303 LLKKLDSELKLEVCHWAAYYEHRM 324

[Close]

BLAST of Sed0002012 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-14
Identity = 55/229 (24.02%), Postives = 108/229 (47.16%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W ++YRPK ++     ++    L   ++   C H +F GPPG GK T   A+  ++FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 279 AMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPC 338
                        KS +   +E+   + R    +N+ +TK  +   +    N  +S  PC
Sbjct: 71  L-----------YKSRV---LELNASDDRG---INVVRTKIKDFAAVAVGSNHRQSGYPC 130

Query: 339 NHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLCIHVHL 398
              + + I+L EAD ++ +    ++  +E  +  ++ FF C+ +S+++  L+S C     
Sbjct: 131 --PSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 190

Query: 399 SPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEAS 447
            P S++ +   +  I  +EG  L       ++  S+ +LR+AI  L+++
Sbjct: 191 KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSA 220

[Close]

BLAST of Sed0002012 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-14
Identity = 55/229 (24.02%), Postives = 108/229 (47.16%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W ++YRPK ++     ++    L   ++   C H +F GPPG GK T   A+  ++FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 279 AMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPC 338
                        KS +   +E+   + R    +N+ +TK  +   +    N  +S  PC
Sbjct: 71  L-----------YKSRV---LELNASDDRG---INVVRTKIKDFAAVAVGSNHRQSGYPC 130

Query: 339 NHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLCIHVHL 398
              + + I+L EAD ++ +    ++  +E  +  ++ FF C+ +S+++  L+S C     
Sbjct: 131 --PSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 190

Query: 399 SPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEAS 447
            P S++ +   +  I  +EG  L       ++  S+ +LR+AI  L+++
Sbjct: 191 KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSA 220

[Close]

BLAST of Sed0002012 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-13
Identity = 53/229 (23.14%), Postives = 105/229 (45.85%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVVRKRGCGHYIFEGPPGVGKRTMIQAMLREVFGDR 278
           W ++YRPK ++     ++    L   ++   C H +F GPPG GK T   A+  ++F   
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF--- 70

Query: 279 AMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLPC 338
                             G +E+   + R    +N+ +TK  +   +    N  +S  PC
Sbjct: 71  ------------------GVLELNASDDRG---INVVRTKIKDFAAVAVGSNHRQSGYPC 130

Query: 339 NHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLCIHVHL 398
              + + I+L EAD ++ +    ++  +E  +  ++ FF C+ +S+++  L+S C     
Sbjct: 131 --PSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 190

Query: 399 SPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEAS 447
            P S++ +   +  I  +EG  L       ++  S+ +LR+AI  L+++
Sbjct: 191 KPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSA 213

[Close]

BLAST of Sed0002012 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-12
Identity = 56/230 (24.35%), Postives = 108/230 (46.96%), Query Frame = 0


Query: 219 WGDEYRPKGLEGFICNKKRACELKEVV-RKRGCGHYIFEGPPGVGKRTMIQAMLREVFGD 278
           W ++YRPK             ++K+V  ++  C H +F GPPG GK T   A+  ++FG 
Sbjct: 11  WVEKYRPK-------------QVKDVAHQEEVCPHMLFYGPPGTGKTTTALAIAHQLFGP 70

Query: 279 RAMEIQEVVRVFDLKSEMVGRIEVRVKESRNYVEVNLSQTKGFEKQVIVQLINEARSPLP 338
                         KS +   +E+   + R    +N+ +TK  +   +    N  +S  P
Sbjct: 71  EL-----------YKSRV---LELNASDDRG---INVVRTKIKDFAAVAVGSNHRQSGYP 130

Query: 339 CNHANCRGIVLCEADQLSNETLMYVKWAIERNNGCSKIFFCCSDVSKLL-LLSSLCIHVH 398
           C   + + I+L EAD ++ +    ++  +E  +  ++ FF C+ +S+++  L+S C    
Sbjct: 131 C--PSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 190

Query: 399 LSPPSKQEIVEVLEFIAKQEGFDLSHRLAEIIADNSKNNLRQAIRSLEAS 447
             P S++ +   +  I  +EG  L       ++  S+ +LR+AI  L+++
Sbjct: 191 FKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSA 208

The following BLAST results are available for this feature:

BLAST of Sed0002012 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946202.1	5.8e-226	71.43	replication factor C subunit 3-like [Cucurbita moschata]	[more]
KAG6597225.1	1.7e-225	71.45	Replication factor C subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022975501.1	3.2e-224	70.96	replication factor C subunit 3-like [Cucurbita maxima]	[more]
XP_008438224.1	8.4e-217	71.17	PREDICTED: replication factor C subunit 3-like [Cucumis melo]	[more]
KAA0049072.1	3.0e-214	71.53	replication factor C subunit 3-like [Cucumis melo var. makuwa]	[more]

BLAST of Sed0002012 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VXX4	1.1e-44	35.49	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
Q852K3	1.0e-39	32.51	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
Q54BN3	9.5e-38	31.00	Probable replication factor C subunit 3 OS=Dictyostelium discoideum OX=44689 GN=...	[more]
Q8R323	5.4e-33	28.62	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]
Q2TBV1	1.2e-32	28.62	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]

BLAST of Sed0002012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G337	2.8e-226	71.43	replication factor C subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC11145035...	[more]
A0A6J1IEE5	1.5e-224	70.96	replication factor C subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111474906 ...	[more]
A0A1S3AWH3	4.1e-217	71.17	replication factor C subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103483394 PE=4...	[more]
A0A5A7TZV7	1.5e-214	71.53	Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3D1K1	2.6e-187	69.75	Replication factor C subunit 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Sed0002012 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27740.1	7.5e-46	35.49	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.1	2.6e-14	24.02	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	2.6e-14	24.02	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	1.3e-13	23.14	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	1.4e-12	24.35	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.272.10		coord: 463..577 e-value: 3.3E-21 score: 77.3
None	No IPR available	GENE3D	1.10.8.60		coord: 401..454 e-value: 1.0E-11 score: 46.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR11669:SF52	OS10G0574500 PROTEIN	coord: 154..571
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 154..571
None	No IPR available	CDD	cd00009	AAA	coord: 240..308 e-value: 9.3487E-4 score: 38.2811
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 216..400 e-value: 2.0E-24 score: 88.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 218..452
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 463..527

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0002012.1	Sed0002012.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003677	DNA binding