Sed0001997 (gene) Chayote v1

Overview
NameSed0001997
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPre-mRNA-splicing factor 38
LocationLG03: 5556906 .. 5558771 (+)
RNA-Seq ExpressionSed0001997
SyntenySed0001997
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACATCATTCTGTCTTCTGTATAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCACGGGCTGTTGAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGGTAGAATTCCTTTGACCTTTAATTTGCATATTTTTATAATAAATTGACTTGCTATATTGTTGCTGTCATATATCTCATTTTACCATTAACTTATGTTTATACTTCTTTGTGGATTCCATACTACTTATTTTATATTTTTTCTAAATAGTTAATAGTCATTAAGGTTGAACTTTCTTTTGTGGGCTTTTTTTTGCTAGCCCTTGTTTTCTTTTCTTTATTCTTAATGAAAACTCGGTTGTTTATGAAAAAAAACCTTTGTTTAAAAAACTAATCAAGGTGTTAGCTCGAAGTTTGTGGAGATGATTAAGGATTTAAATCCATGGTGCCACGTATCTAATCCTATGTGTTTCCTATCAACCAGTAGGGTTGCCTAGTAAGATTAGTTGAGTTGCGGACAAGCTGGTTCAGACACTCAATGATGTAAAAAAATTAATCAACAATGAACATGCCCAAAGAGCTATTGGTTATCATGAATTAGAAAAGTATGACGAATGCATTAAGTTACAATGTTTATTGGTTTTTGATTTCTAATTGAACAGTTTTGAAAAGAAAAAGTTCCATTTTTCAGCTTGCATTCATAATGCATTCAAGTCCCATATCATATTCTAATACAAAATTTAAGCAAGTCTTCAACTAGGAACATAGGTTACACCTCTCTTTTTCTCAGTCAAAATTATTGTTATGATTTTTTATGATGGTTGTGCTTTTAGCAGGATTTCAATTTGTGAATGGACTATGTTGGGGATGTTGGTGAGAATTCTTGGGAACTTATTCTGATTTTTGAAACTTAGGGCTCCCTCGTATTTAGTTGTGACTTTCATATGGTCTTAGACTGAAGAGATGAATTGGTATAAGAAGTTCTCTTTGCTATCTTCTCTGAAGTTGGTCTTTGGCCCATATGCTAGTTCCTGCTGATCATTGTTTTTTTTTTTTTTTGTGGTAGGAAACAAAACCATTTAATTGATAAGTGAAAAAAGACAAATAATCTATCGAAACAAGAGAAAACAGAGAAAAAGACAAAGGAGGAGAGGGAGAGAGGCCAAATACAAAGGCCAAAGGGAAGGGGCAATAAACCTCAAGAATGAACCAAGACTATAACATGCCCAAATAACCCAAGGAAATCTCGAAGTTGAAAAAGAAGCAATCCATCGTCGGTTGGAGAGAACCAAAAGAATTAAATTAGGGGGATTTGTGTTACTGTATAAGAACGCTTTTGGGATGCATTTTTCCTAATCTCTTTGAAGGAGCAACATAGTAGCAGACGATGGATCACAAATGCCTTGGGAAGAAATTAGAGAGCTCAATTGTTTGTGTTAGACCTCAATCTGTGTGATGAGGTTGACTTTGTGCTTTATTGGATAGAAGTGTTGAGATTAAGTAGTTAGCAGATCCCTTTAGTCTTGTTTTTTGCAGCTGCCGCCTTCTTGTTTGCGGTAATAGCCATGATACATGGGCCATTTTTTGCTAACCAAGAAGCAAGGAGAGGTAAGAGAAGAGCTGGATCAAAATCCATTTCTTCTTCCAACTCTATCTCTGCCGAAGAATTTGATCTATCCATTTCCTTGTGGAGTTGA

mRNA sequence

ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACATCATTCTGTCTTCTGTATAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCACGGGCTGTTGAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGCTGCCGCCTTCTTGTTTGCGGTAATAGCCATGATACATGGGCCATTTTTTGCTAACCAAGAAGCAAGGAGAGGTAAGAGAAGAGCTGGATCAAAATCCATTTCTTCTTCCAACTCTATCTCTGCCGAAGAATTTGATCTATCCATTTCCTTGTGGAGTTGA

Coding sequence (CDS)

ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACATCATTCTGTCTTCTGTATAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCACGGGCTGTTGAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGCTGCCGCCTTCTTGTTTGCGGTAATAGCCATGATACATGGGCCATTTTTTGCTAACCAAGAAGCAAGGAGAGGTAAGAGAAGAGCTGGATCAAAATCCATTTCTTCTTCCAACTCTATCTCTGCCGAAGAATTTGATCTATCCATTTCCTTGTGGAGTTGA

Protein sequence

MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFLFAVIAMIHGPFFANQEARRGKRRAGSKSISSSNSISAEEFDLSISLWS
Homology
[Close]
BLAST of Sed0001997 vs. NCBI nr
Match: XP_023550341.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. NCBI nr
Match: TYK18924.1 (pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. NCBI nr
Match: XP_022993767.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. NCBI nr
Match: XP_022938827.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. NCBI nr
Match: XP_008463144.1 (PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo] >XP_008463145.1 PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo] >XP_016902978.1 PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match: Q8RWB1 (Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-43
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +L
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYL 103

[Close]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match: Q5VTL8 (Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-22
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
                   ST+FCLLYK FT+KLT KQ+ GL+ H DSPYIRA+   ++
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYI 165

[Close]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match: Q80SY5 (Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-22
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  -------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
                   ST+FCLLYK FT+KLT KQ+ GL+ H DSPYIRA+   ++
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYI 166

[Close]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match: Q6AXY7 (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-22
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
                   ST+FCLLYK FT+KLT KQ+ GL+ H DSPYIRA+   ++
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYI 165

[Close]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match: Q6P7Y3 (Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  -------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
                   ST+FCLLYK FT+KLT KQ+ GL+ H DSP IRA+   ++
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYI 143

[Close]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match: A0A1S3CIJ0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match: A0A6J1CK04 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match: A0A6J1JTS5 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match: A0A5A7TWJ6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00850 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match: A0A5D3D5T6 (Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00040 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           GPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   +L
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYL 102

[Close]
BLAST of Sed0001997 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +L
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYL 103

[Close]
BLAST of Sed0001997 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 82/101 (81.19%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +L
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYL 103

[Close]
BLAST of Sed0001997 vs. TAIR 10
Match: AT5G37370.3 (PRP38 family protein )

HSP 1 Score: 174.9 bits (442), Expect = 5.0e-44
Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 2  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
          EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAV 98
          PST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAI 98

[Close]
BLAST of Sed0001997 vs. TAIR 10
Match: AT5G37370.4 (PRP38 family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 55  MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL 103
           M GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +L
Sbjct: 1   MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYL 48

The following BLAST results are available for this feature:
BLAST of Sed0001997 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023550341.15.7e-5094.12pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo][more]
TYK18924.15.7e-5094.12pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa][more]
XP_022993767.15.7e-5094.12pre-mRNA splicing factor SR-like 1 [Cucurbita maxima][more]
XP_022938827.15.7e-5094.12pre-mRNA splicing factor SR-like 1 [Cucurbita moschata][more]
XP_008463144.15.7e-5094.12PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo] >XP_008463145.1 PREDICTED... [more]
BLAST of Sed0001997 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWB12.4e-4381.19Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 ... [more]
Q5VTL85.2e-2253.70Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1[more]
Q80SY55.2e-2253.70Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1[more]
Q6AXY75.2e-2253.70Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1[more]
Q6P7Y34.4e-2151.85Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1[more]
BLAST of Sed0001997 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CIJ02.8e-5094.12Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1[more]
A0A6J1CK042.8e-5094.12Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 ... [more]
A0A6J1JTS52.8e-5094.12Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=... [more]
A0A5A7TWJ62.8e-5094.12Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D5T62.8e-5094.12Pre-mRNA-splicing factor 38 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Sed0001997 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G37370.11.7e-4481.19PRP38 family protein [more]
AT5G37370.21.7e-4481.19PRP38 family protein [more]
AT5G37370.35.0e-4483.33PRP38 family protein [more]
AT5G37370.42.1e-1883.33PRP38 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 12..102
e-value: 1.3E-30
score: 106.6
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..102
NoneNo IPR availablePANTHERPTHR23142:SF3PRP38 FAMILY PROTEINcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0001997.1Sed0001997.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0035435 phosphate ion transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0071011 precatalytic spliceosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0005315 inorganic phosphate transmembrane transporter activity